Wall clock time and date at job start Tue Mar 31 2020 17:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34223 * 117.00320 * 2 1 4 4 O 1.20833 * 119.99899 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00482 * 180.02562 * 3 2 1 6 6 C 1.52996 * 109.47557 * 180.02562 * 5 3 2 7 7 N 1.46502 * 109.47386 * 179.97438 * 6 5 3 8 8 C 1.37099 * 119.99750 * 263.62465 * 7 6 5 9 9 H 1.08001 * 119.99555 * 141.97531 * 8 7 6 10 10 C 1.38946 * 120.00329 * 321.98167 * 8 7 6 11 11 N 1.31414 * 120.00144 * 157.95486 * 10 8 7 12 12 Si 1.86805 * 119.99691 * 337.95577 * 10 8 7 13 13 H 1.48501 * 109.47155 * 95.69704 * 12 10 8 14 14 H 1.48499 * 109.46718 * 215.69273 * 12 10 8 15 15 H 1.48495 * 109.47328 * 335.69023 * 12 10 8 16 16 C 1.34774 * 120.00128 * 83.62482 * 7 6 5 17 17 O 1.21286 * 119.99817 * 0.02562 * 16 7 6 18 18 C 1.50699 * 119.99975 * 180.02562 * 16 7 6 19 19 H 1.08994 * 115.56266 * 34.30594 * 18 16 7 20 20 C 1.53001 * 117.49717 * 248.62485 * 18 16 7 21 21 H 1.08997 * 117.50124 * 145.02322 * 20 18 16 22 22 C 1.53006 * 117.51694 * 359.97438 * 20 18 16 23 23 C 1.52996 * 117.49897 * 180.02562 * 18 16 7 24 24 H 1.09003 * 117.51679 * 0.02562 * 23 18 16 25 25 C 1.50701 * 117.49923 * 214.97746 * 23 18 16 26 26 C 1.38238 * 120.00066 * 119.98313 * 25 23 18 27 27 C 1.38230 * 119.99823 * 179.97438 * 26 25 23 28 28 C 1.38243 * 120.00160 * 0.02562 * 27 26 25 29 29 C 1.38226 * 119.99857 * 0.06752 * 28 27 26 30 30 C 1.38239 * 119.99731 * 299.96349 * 25 23 18 31 31 H 1.08998 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47437 * 300.00051 * 1 2 3 33 33 H 1.09005 * 109.47104 * 60.00034 * 1 2 3 34 34 H 1.08999 * 109.47020 * 59.99572 * 5 3 2 35 35 H 1.09001 * 109.47019 * 300.00204 * 5 3 2 36 36 H 1.08999 * 109.47384 * 59.99698 * 6 5 3 37 37 H 1.09001 * 109.47043 * 300.00092 * 6 5 3 38 38 H 0.96999 * 120.00136 * 180.02562 * 11 10 8 39 39 H 1.08996 * 109.47163 * 351.37561 * 22 20 18 40 40 H 1.08997 * 109.47137 * 111.37732 * 22 20 18 41 41 H 1.09003 * 109.46939 * 231.37639 * 22 20 18 42 42 H 1.07993 * 119.99649 * 359.97438 * 26 25 23 43 43 H 1.08000 * 120.00029 * 179.71900 * 27 26 25 44 44 H 1.08001 * 119.99966 * 179.97438 * 28 27 26 45 45 H 1.07999 * 119.99969 * 179.97438 * 29 28 27 46 46 H 1.07998 * 120.00151 * 359.97438 * 30 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 0.0002 7 7 5.4632 2.8186 0.0002 8 6 6.1408 2.9856 1.1803 9 1 7.0770 2.4722 1.3427 10 6 5.6230 3.8151 2.1675 11 7 5.9964 3.6606 3.4180 12 14 4.3962 5.1498 1.7170 13 1 3.0158 4.6469 1.9334 14 1 4.6276 6.3431 2.5701 15 1 4.5700 5.5206 0.2896 16 6 6.1430 2.7251 -1.1598 17 8 5.5434 2.5779 -2.2038 18 6 7.6479 2.8034 -1.1596 19 1 8.1415 2.3672 -0.2912 20 6 8.2910 4.0400 -1.7906 21 1 9.2077 4.4173 -1.3373 22 6 7.3573 5.1025 -2.3740 23 6 8.3613 2.6912 -2.5084 24 1 7.7423 2.5612 -3.3962 25 6 9.6926 1.9855 -2.5349 26 6 9.8615 0.8574 -3.3158 27 6 11.0828 0.2104 -3.3404 28 6 12.1352 0.6913 -2.5839 29 6 11.9657 1.8182 -1.8016 30 6 10.7450 2.4666 -1.7787 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 3.9557 0.7808 -0.8908 35 1 3.9564 0.7805 0.8891 36 1 3.6108 3.2356 0.8906 37 1 3.6101 3.2367 -0.8893 38 1 5.6346 4.2394 4.1072 39 1 6.3349 4.7248 -2.3784 40 1 7.4086 6.0051 -1.7652 41 1 7.6634 5.3344 -3.3942 42 1 9.0392 0.4815 -3.9064 43 1 11.2134 -0.6736 -3.9469 44 1 13.0892 0.1855 -2.6029 45 1 12.7877 2.1937 -1.2103 46 1 10.6133 3.3484 -1.1692 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:51 Heat of formation + Delta-G solvation = -78.683336 kcal Electronic energy + Delta-G solvation = -28458.492971 eV Core-core repulsion = 24506.790572 eV Total energy + Delta-G solvation = -3951.702399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.75308 -41.30082 -40.04521 -38.12546 -37.56339 -36.70004 -34.22748 -32.73104 -31.96174 -31.65900 -29.37983 -28.74321 -26.96776 -26.35843 -24.43692 -23.67770 -22.60462 -21.89105 -20.90081 -20.61214 -19.04734 -18.41179 -18.19385 -17.93804 -17.78661 -17.43984 -16.75381 -16.32285 -16.16187 -15.74736 -15.62947 -15.26676 -15.06079 -14.61326 -14.50149 -14.32539 -14.18447 -14.07363 -13.81072 -13.76693 -13.58385 -13.29495 -13.24366 -13.04932 -12.86550 -12.65284 -12.51887 -12.12945 -12.03323 -11.90920 -11.81844 -11.80267 -11.71279 -11.36844 -11.18903 -10.88005 -10.50832 -9.83011 -9.75324 -9.39429 -8.54934 -6.15710 0.44700 0.56891 1.02347 1.16565 1.28484 1.37623 1.52340 1.77521 2.14357 2.47952 2.80756 2.89168 3.20207 3.62708 3.67507 3.82309 3.91167 3.94631 4.04541 4.08202 4.20353 4.26737 4.27636 4.28181 4.32493 4.36436 4.40471 4.51425 4.62516 4.65075 4.67134 4.77005 4.78980 4.84558 4.89302 5.04969 5.13594 5.18273 5.22771 5.25061 5.35617 5.40997 5.65654 5.68413 5.81232 6.04136 6.18451 6.19717 6.58670 6.92837 7.36127 7.70916 8.58496 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.011577 B = 0.003657 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2417.926014 B = 7654.696518 C = 8871.765295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.475 3.525 4 O -0.540 6.540 5 C -0.116 4.116 6 C 0.116 3.884 7 N -0.468 5.468 8 C -0.334 4.334 9 H 0.094 0.906 10 C 0.045 3.955 11 N -0.886 5.886 12 Si 0.904 3.096 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.268 1.268 16 C 0.515 3.485 17 O -0.607 6.607 18 C -0.156 4.156 19 H 0.116 0.884 20 C -0.108 4.108 21 H 0.130 0.870 22 C -0.128 4.128 23 C -0.080 4.080 24 H 0.109 0.891 25 C -0.061 4.061 26 C -0.128 4.128 27 C -0.122 4.122 28 C -0.129 4.129 29 C -0.123 4.123 30 C -0.131 4.131 31 H 0.138 0.862 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.280 0.720 39 H 0.036 0.964 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.123 0.877 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.142 0.858 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.970 -5.977 -8.890 11.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.319 3.681 4 O -0.430 6.430 5 C -0.155 4.155 6 C -0.008 4.008 7 N -0.188 5.188 8 C -0.462 4.462 9 H 0.112 0.888 10 C -0.161 4.161 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.201 1.201 14 H -0.206 1.206 15 H -0.192 1.192 16 C 0.306 3.694 17 O -0.493 6.493 18 C -0.177 4.177 19 H 0.134 0.866 20 C -0.126 4.126 21 H 0.148 0.852 22 C -0.184 4.184 23 C -0.099 4.099 24 H 0.127 0.873 25 C -0.061 4.061 26 C -0.146 4.146 27 C -0.140 4.140 28 C -0.147 4.147 29 C -0.141 4.141 30 C -0.149 4.149 31 H 0.156 0.844 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.141 0.859 43 H 0.162 0.838 44 H 0.165 0.835 45 H 0.160 0.840 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.411 -5.703 -9.165 11.661 hybrid contribution -1.213 0.881 0.474 1.572 sum 3.198 -4.822 -8.691 10.441 Atomic orbital electron populations 1.23617 0.74524 1.06011 1.02577 1.86508 1.25332 1.32105 1.83629 1.23746 0.91962 0.81423 0.70974 1.90637 1.67879 1.37431 1.47057 1.21628 0.87179 0.99621 1.07050 1.21319 0.82713 0.95193 1.01559 1.43707 1.03865 1.64777 1.06489 1.18917 1.08381 1.27993 0.90872 0.88802 1.25621 0.98106 0.97721 0.94612 1.69790 1.44536 1.37750 1.00221 0.86489 0.80017 0.81175 0.79237 1.20082 1.20554 1.19220 1.19919 0.89254 0.77930 0.82273 1.90523 1.71154 1.55377 1.32260 1.22183 0.91270 1.06259 0.97941 0.86576 1.22519 1.00610 0.88633 1.00847 0.85211 1.21420 0.98009 0.97617 1.01403 1.21101 0.94875 0.98852 0.95064 0.87309 1.19217 0.93092 0.95950 0.97880 1.21173 0.98488 0.95300 0.99603 1.21418 0.92567 1.00334 0.99692 1.21495 0.99891 0.96665 0.96642 1.21429 0.97264 0.96069 0.99300 1.21270 0.93321 1.00863 0.99428 0.84371 0.92048 0.91862 0.86646 0.86167 0.91658 0.91827 0.91035 0.94449 0.91588 0.90245 0.85877 0.83814 0.83549 0.83987 0.85527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.56 113.37 1.20 1.75 16 2 O -0.36 -10.82 10.56 -51.35 -0.54 -11.36 16 3 C 0.47 17.35 7.96 71.23 0.57 17.92 16 4 O -0.54 -22.56 15.73 21.94 0.35 -22.22 16 5 C -0.12 -4.42 6.08 29.85 0.18 -4.24 16 6 C 0.12 5.23 3.21 86.38 0.28 5.51 16 7 N -0.47 -22.00 2.18 -635.55 -1.39 -23.39 16 8 C -0.33 -16.84 9.08 84.04 0.76 -16.08 16 9 H 0.09 4.94 6.78 -2.91 -0.02 4.92 16 10 C 0.04 2.32 5.26 84.93 0.45 2.77 16 11 N -0.89 -47.89 13.96 21.66 0.30 -47.59 16 12 Si 0.90 42.84 25.05 68.60 1.72 44.55 16 13 H -0.27 -13.11 6.70 99.48 0.67 -12.45 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 15 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 16 C 0.51 23.12 6.00 87.66 0.53 23.65 16 17 O -0.61 -28.84 15.00 -3.05 -0.05 -28.89 16 18 C -0.16 -6.00 4.93 -11.54 -0.06 -6.05 16 19 H 0.12 4.62 6.80 -2.39 -0.02 4.60 16 20 C -0.11 -3.51 5.73 -10.81 -0.06 -3.57 16 21 H 0.13 3.65 6.18 -2.39 -0.01 3.63 16 22 C -0.13 -4.21 10.03 71.98 0.72 -3.48 16 23 C -0.08 -2.62 5.27 -11.56 -0.06 -2.68 16 24 H 0.11 3.79 7.67 -2.39 -0.02 3.77 16 25 C -0.06 -1.76 5.61 -19.86 -0.11 -1.87 16 26 C -0.13 -3.28 9.74 22.27 0.22 -3.07 16 27 C -0.12 -2.56 10.05 22.27 0.22 -2.33 16 28 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 29 C -0.12 -2.63 10.05 22.27 0.22 -2.40 16 30 C -0.13 -3.38 9.30 22.27 0.21 -3.17 16 31 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 33 H 0.06 1.36 8.13 -2.38 -0.02 1.34 16 34 H 0.12 4.21 8.14 -2.39 -0.02 4.19 16 35 H 0.12 4.41 8.14 -2.39 -0.02 4.39 16 36 H 0.07 3.14 3.62 -2.39 -0.01 3.13 16 37 H 0.06 2.99 7.58 -2.39 -0.02 2.97 16 38 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 39 H 0.04 1.48 5.71 -2.39 -0.01 1.46 16 40 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 43 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 44 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 45 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 46 H 0.13 3.11 6.02 -2.91 -0.02 3.09 16 Total: -1.00 -64.39 380.16 6.83 -57.56 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.95 Total: 30.97 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 5.48 Total: 0.37 kcal Atomic # 7 Polarization: -69.90 SS G_CDS: -1.08 Total: -70.98 kcal Atomic # 8 Polarization: -62.23 SS G_CDS: -0.24 Total: -62.47 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.72 Total: 44.55 kcal Total: -64.39 6.83 -57.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.122 kcal (2) G-P(sol) polarization free energy of solvation -64.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds