Wall clock time and date at job start Tue Mar 31 2020 17:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00578 * 2 1 4 4 O 1.20829 * 119.99508 * 0.02562 * 3 2 1 5 5 C 1.50687 * 120.00394 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47405 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47322 * 179.97438 * 6 5 3 8 8 C 1.37100 * 120.00159 * 95.20795 * 7 6 5 9 9 H 1.07994 * 120.00453 * 213.17726 * 8 7 6 10 10 C 1.38958 * 119.99217 * 33.45482 * 8 7 6 11 11 N 1.31417 * 119.99894 * 212.11464 * 10 8 7 12 12 Si 1.86800 * 120.00331 * 32.12166 * 10 8 7 13 13 H 1.48505 * 109.47220 * 95.73131 * 12 10 8 14 14 H 1.48490 * 109.47326 * 215.73346 * 12 10 8 15 15 H 1.48502 * 109.47042 * 335.73319 * 12 10 8 16 16 C 1.34781 * 120.00305 * 275.21523 * 7 6 5 17 17 O 1.21294 * 119.99529 * 4.65279 * 16 7 6 18 18 C 1.50696 * 119.99826 * 184.65196 * 16 7 6 19 19 H 1.09005 * 115.55065 * 44.10568 * 18 16 7 20 20 C 1.53003 * 117.49672 * 189.76466 * 18 16 7 21 21 H 1.09001 * 117.49776 * 0.02562 * 20 18 16 22 22 C 1.50702 * 117.50226 * 214.98125 * 20 18 16 23 23 C 1.38228 * 120.00016 * 215.29811 * 22 20 18 24 24 C 1.38234 * 120.00110 * 179.74389 * 23 22 20 25 25 C 1.38239 * 119.99630 * 0.55506 * 24 23 22 26 26 C 1.38236 * 120.00112 * 359.69576 * 25 24 23 27 27 C 1.38232 * 119.99665 * 0.02780 * 26 25 24 28 28 C 1.53000 * 117.50156 * 258.42360 * 18 16 7 29 29 H 1.08998 * 117.49802 * 0.02562 * 28 18 16 30 30 C 1.52999 * 117.49697 * 145.00139 * 28 18 16 31 31 H 1.09005 * 109.46614 * 59.99571 * 1 2 3 32 32 H 1.08996 * 109.47707 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46602 * 300.00678 * 1 2 3 34 34 H 1.09005 * 109.47583 * 60.00048 * 5 3 2 35 35 H 1.08999 * 109.47557 * 299.99860 * 5 3 2 36 36 H 1.08996 * 109.46844 * 60.00153 * 6 5 3 37 37 H 1.08998 * 109.47071 * 299.99794 * 6 5 3 38 38 H 0.96997 * 120.00088 * 180.02562 * 11 10 8 39 39 H 1.08003 * 120.00512 * 359.97438 * 23 22 20 40 40 H 1.07998 * 120.00428 * 180.27392 * 24 23 22 41 41 H 1.07999 * 120.00129 * 179.72817 * 25 24 23 42 42 H 1.07995 * 120.00058 * 180.02562 * 26 25 24 43 43 H 1.08002 * 119.99750 * 179.97438 * 27 26 25 44 44 H 1.09001 * 109.47345 * 59.85371 * 30 28 18 45 45 H 1.09002 * 109.46836 * 179.85369 * 30 28 18 46 46 H 1.09006 * 109.47340 * 299.85146 * 30 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0003 2.7419 -0.0011 7 7 5.4633 2.8185 -0.0011 8 6 6.1423 2.9615 -1.1835 9 1 7.1152 2.5090 -1.3057 10 6 5.5810 3.6937 -2.2226 11 7 5.8287 3.3608 -3.4696 12 14 4.4747 5.1513 -1.8472 13 1 5.2732 6.4027 -1.8897 14 1 3.3893 5.2222 -2.8580 15 1 3.8823 4.9878 -0.4953 16 6 6.1418 2.7482 1.1614 17 8 5.5485 2.5371 2.1980 18 6 7.6375 2.9319 1.1730 19 1 8.0148 3.7549 0.5660 20 6 8.3778 2.6169 2.4745 21 1 7.7830 2.2764 3.3220 22 6 9.5732 3.4676 2.8186 23 6 10.6620 2.9038 3.4568 24 6 11.7607 3.6830 3.7677 25 6 11.7658 5.0285 3.4506 26 6 10.6747 5.5934 2.8170 27 6 9.5785 4.8130 2.5010 28 6 8.5030 1.6744 1.2748 29 1 7.9905 0.7141 1.3330 30 6 9.8319 1.6681 0.5166 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5140 0.8900 34 1 3.9558 0.7808 -0.8908 35 1 3.9565 0.7805 0.8891 36 1 3.6109 3.2362 0.8889 37 1 3.6103 3.2358 -0.8911 38 1 5.4372 3.8721 -4.1950 39 1 10.6559 1.8537 3.7093 40 1 12.6132 3.2416 4.2624 41 1 12.6223 5.6382 3.6974 42 1 10.6789 6.6445 2.5689 43 1 8.7259 5.2544 2.0064 44 1 10.4600 2.4825 0.8776 45 1 10.3394 0.7175 0.6808 46 1 9.6429 1.7998 -0.5489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871344752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:57 Heat of formation + Delta-G solvation = -63.239514 kcal Electronic energy + Delta-G solvation = -28409.492598 eV Core-core repulsion = 24458.459894 eV Total energy + Delta-G solvation = -3951.032705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.23457 -39.85369 -38.68266 -36.67574 -36.15595 -34.94937 -32.34004 -31.08000 -30.77334 -30.53871 -28.27969 -27.59513 -25.08108 -24.78963 -23.16955 -22.41510 -21.30878 -20.42264 -19.49858 -18.87263 -17.56215 -17.12095 -16.58191 -16.42575 -16.35328 -15.93372 -15.11861 -14.86963 -14.65949 -14.53253 -14.13853 -13.88319 -13.58902 -13.29012 -13.23872 -13.11785 -12.64041 -12.60534 -12.36159 -12.29687 -12.23092 -11.94522 -11.85780 -11.72137 -11.36846 -11.01061 -10.95742 -10.82107 -10.70652 -10.64786 -10.34598 -10.19715 -9.76981 -9.73798 -9.57532 -9.24145 -8.79060 -8.63840 -8.45087 -7.96129 -6.64280 -4.09278 1.48549 1.53101 2.52113 2.91899 3.06645 3.22059 3.30849 3.46699 3.89638 4.06100 4.18404 4.36924 4.78622 4.97839 5.05212 5.11098 5.16368 5.17706 5.23635 5.24448 5.29765 5.35648 5.53403 5.56510 5.59052 5.65734 5.70404 5.75806 5.77758 6.07665 6.09593 6.14385 6.16246 6.16786 6.23459 6.37803 6.39038 6.51642 6.54338 6.62143 6.67743 6.68136 6.73396 6.83323 7.13494 7.19611 7.94382 8.02775 8.20387 8.87316 9.27979 9.60495 10.45646 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003423 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.660767 B = 8178.683381 C = 9149.838230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.468 3.532 4 O -0.512 6.512 5 C -0.126 4.126 6 C 0.131 3.869 7 N -0.452 5.452 8 C -0.355 4.355 9 H 0.109 0.891 10 C 0.077 3.923 11 N -0.836 5.836 12 Si 0.845 3.155 13 H -0.277 1.277 14 H -0.280 1.280 15 H -0.250 1.250 16 C 0.500 3.500 17 O -0.597 6.597 18 C -0.132 4.132 19 H 0.124 0.876 20 C -0.105 4.105 21 H 0.122 0.878 22 C -0.036 4.036 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.131 4.131 26 C -0.120 4.120 27 C -0.112 4.112 28 C -0.115 4.115 29 H 0.104 0.896 30 C -0.124 4.124 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.276 0.724 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.125 0.875 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.653 -3.050 7.609 9.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.311 3.689 4 O -0.400 6.400 5 C -0.164 4.164 6 C 0.007 3.993 7 N -0.170 5.170 8 C -0.481 4.481 9 H 0.127 0.873 10 C -0.133 4.133 11 N -0.469 5.469 12 Si 0.670 3.330 13 H -0.203 1.203 14 H -0.205 1.205 15 H -0.174 1.174 16 C 0.290 3.710 17 O -0.483 6.483 18 C -0.153 4.153 19 H 0.142 0.858 20 C -0.123 4.123 21 H 0.140 0.860 22 C -0.036 4.036 23 C -0.130 4.130 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.134 4.134 29 H 0.123 0.877 30 C -0.181 4.181 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.139 0.861 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.091 -2.828 7.851 9.294 hybrid contribution -0.844 0.962 -0.272 1.308 sum 3.247 -1.866 7.579 8.454 Atomic orbital electron populations 1.23199 0.77141 1.03219 1.02370 1.86539 1.22899 1.34062 1.84419 1.24036 0.92340 0.80988 0.71492 1.90640 1.67399 1.36346 1.45613 1.21862 0.86033 1.02178 1.06367 1.21441 0.82752 0.92550 1.02585 1.43626 1.03730 1.63464 1.06225 1.19021 1.05818 1.35080 0.88213 0.87344 1.25276 0.96413 0.97055 0.94511 1.69920 1.41843 1.36042 0.99100 0.87504 0.80763 0.84386 0.80357 1.20312 1.20547 1.17409 1.19497 0.88045 0.80664 0.82811 1.90549 1.70337 1.54842 1.32567 1.22111 0.91997 1.01358 0.99845 0.85771 1.21212 0.96607 1.01259 0.93241 0.86006 1.19172 0.94088 0.93417 0.96917 1.20945 0.93120 0.99865 0.99055 1.21068 0.98231 0.94141 1.00715 1.21079 0.98462 0.95301 1.00097 1.21128 0.93807 0.99748 0.99088 1.21179 0.98528 0.93561 0.99710 1.22309 0.97695 0.94496 0.98929 0.87750 1.21407 0.94719 1.01519 1.00434 0.92076 0.88439 0.92137 0.86795 0.87431 0.90770 0.90570 0.91363 0.86139 0.86428 0.86578 0.86297 0.85712 0.92261 0.92623 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.74 10.56 -39.25 -0.41 -6.16 16 3 C 0.47 8.67 7.96 36.00 0.29 8.95 16 4 O -0.51 -10.66 15.73 -18.75 -0.30 -10.96 16 5 C -0.13 -2.40 6.10 -27.89 -0.17 -2.57 16 6 C 0.13 2.91 2.71 -4.04 -0.01 2.89 16 7 N -0.45 -10.37 2.23 -114.81 -0.26 -10.63 16 8 C -0.36 -8.66 8.92 -14.93 -0.13 -8.79 16 9 H 0.11 2.74 7.49 -52.49 -0.39 2.35 16 10 C 0.08 1.95 5.09 -17.46 -0.09 1.86 16 11 N -0.84 -21.90 13.96 55.50 0.77 -21.12 16 12 Si 0.85 19.70 26.14 -169.99 -4.44 15.25 16 13 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.25 -5.88 5.58 56.52 0.32 -5.57 16 16 C 0.50 11.08 7.35 -10.99 -0.08 11.00 16 17 O -0.60 -14.30 15.97 5.55 0.09 -14.21 16 18 C -0.13 -2.48 3.66 -91.77 -0.34 -2.82 16 19 H 0.12 2.38 7.16 -51.93 -0.37 2.01 16 20 C -0.10 -1.70 5.44 -91.73 -0.50 -2.20 16 21 H 0.12 2.11 7.70 -51.93 -0.40 1.71 16 22 C -0.04 -0.52 3.87 -104.63 -0.40 -0.93 16 23 C -0.11 -1.41 9.13 -39.59 -0.36 -1.77 16 24 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 25 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 26 C -0.12 -1.49 10.05 -39.58 -0.40 -1.89 16 27 C -0.11 -1.62 9.22 -39.59 -0.36 -1.98 16 28 C -0.12 -1.86 6.11 -90.58 -0.55 -2.41 16 29 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 30 C -0.12 -1.76 9.94 37.16 0.37 -1.39 16 31 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.11 2.12 8.14 -51.93 -0.42 1.70 16 35 H 0.11 1.99 8.09 -51.93 -0.42 1.57 16 36 H 0.07 1.72 7.59 -51.93 -0.39 1.33 16 37 H 0.08 1.77 3.98 -51.93 -0.21 1.57 16 38 H 0.28 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 1.87 7.29 -52.49 -0.38 1.48 16 44 H 0.06 0.83 5.98 -51.93 -0.31 0.52 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 383.36 15.07 5.78 5.78 Total: -1.00 -29.25 383.36 -7.99 -37.24 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.75 Total: 9.06 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -2.47 Total: -4.24 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.52 Total: -31.75 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.62 Total: -31.33 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.44 Total: 15.25 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.25 -7.99 -37.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.002 kcal (2) G-P(sol) polarization free energy of solvation -29.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds