Wall clock time and date at job start Tue Mar 31 2020 17:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 117.00578 * 2 1 4 4 O 1.20829 * 119.99508 * 0.02562 * 3 2 1 5 5 C 1.50687 * 120.00394 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47405 * 179.97438 * 5 3 2 7 7 N 1.46501 * 109.47322 * 179.97438 * 6 5 3 8 8 C 1.37100 * 120.00159 * 95.20795 * 7 6 5 9 9 H 1.07994 * 120.00453 * 213.17726 * 8 7 6 10 10 C 1.38958 * 119.99217 * 33.45482 * 8 7 6 11 11 N 1.31417 * 119.99894 * 212.11464 * 10 8 7 12 12 Si 1.86800 * 120.00331 * 32.12166 * 10 8 7 13 13 H 1.48505 * 109.47220 * 95.73131 * 12 10 8 14 14 H 1.48490 * 109.47326 * 215.73346 * 12 10 8 15 15 H 1.48502 * 109.47042 * 335.73319 * 12 10 8 16 16 C 1.34781 * 120.00305 * 275.21523 * 7 6 5 17 17 O 1.21294 * 119.99529 * 4.65279 * 16 7 6 18 18 C 1.50696 * 119.99826 * 184.65196 * 16 7 6 19 19 H 1.09005 * 115.55065 * 44.10568 * 18 16 7 20 20 C 1.53003 * 117.49672 * 189.76466 * 18 16 7 21 21 H 1.09001 * 117.49776 * 0.02562 * 20 18 16 22 22 C 1.50702 * 117.50226 * 214.98125 * 20 18 16 23 23 C 1.38228 * 120.00016 * 215.29811 * 22 20 18 24 24 C 1.38234 * 120.00110 * 179.74389 * 23 22 20 25 25 C 1.38239 * 119.99630 * 0.55506 * 24 23 22 26 26 C 1.38236 * 120.00112 * 359.69576 * 25 24 23 27 27 C 1.38232 * 119.99665 * 0.02780 * 26 25 24 28 28 C 1.53000 * 117.50156 * 258.42360 * 18 16 7 29 29 H 1.08998 * 117.49802 * 0.02562 * 28 18 16 30 30 C 1.52999 * 117.49697 * 145.00139 * 28 18 16 31 31 H 1.09005 * 109.46614 * 59.99571 * 1 2 3 32 32 H 1.08996 * 109.47707 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46602 * 300.00678 * 1 2 3 34 34 H 1.09005 * 109.47583 * 60.00048 * 5 3 2 35 35 H 1.08999 * 109.47557 * 299.99860 * 5 3 2 36 36 H 1.08996 * 109.46844 * 60.00153 * 6 5 3 37 37 H 1.08998 * 109.47071 * 299.99794 * 6 5 3 38 38 H 0.96997 * 120.00088 * 180.02562 * 11 10 8 39 39 H 1.08003 * 120.00512 * 359.97438 * 23 22 20 40 40 H 1.07998 * 120.00428 * 180.27392 * 24 23 22 41 41 H 1.07999 * 120.00129 * 179.72817 * 25 24 23 42 42 H 1.07995 * 120.00058 * 180.02562 * 26 25 24 43 43 H 1.08002 * 119.99750 * 179.97438 * 27 26 25 44 44 H 1.09001 * 109.47345 * 59.85371 * 30 28 18 45 45 H 1.09002 * 109.46836 * 179.85369 * 30 28 18 46 46 H 1.09006 * 109.47340 * 299.85146 * 30 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 6 4.0003 2.7419 -0.0011 7 7 5.4633 2.8185 -0.0011 8 6 6.1423 2.9615 -1.1835 9 1 7.1152 2.5090 -1.3057 10 6 5.5810 3.6937 -2.2226 11 7 5.8287 3.3608 -3.4696 12 14 4.4747 5.1513 -1.8472 13 1 5.2732 6.4027 -1.8897 14 1 3.3893 5.2222 -2.8580 15 1 3.8823 4.9878 -0.4953 16 6 6.1418 2.7482 1.1614 17 8 5.5485 2.5371 2.1980 18 6 7.6375 2.9319 1.1730 19 1 8.0148 3.7549 0.5660 20 6 8.3778 2.6169 2.4745 21 1 7.7830 2.2764 3.3220 22 6 9.5732 3.4676 2.8186 23 6 10.6620 2.9038 3.4568 24 6 11.7607 3.6830 3.7677 25 6 11.7658 5.0285 3.4506 26 6 10.6747 5.5934 2.8170 27 6 9.5785 4.8130 2.5010 28 6 8.5030 1.6744 1.2748 29 1 7.9905 0.7141 1.3330 30 6 9.8319 1.6681 0.5166 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3632 0.5140 0.8900 34 1 3.9558 0.7808 -0.8908 35 1 3.9565 0.7805 0.8891 36 1 3.6109 3.2362 0.8889 37 1 3.6103 3.2358 -0.8911 38 1 5.4372 3.8721 -4.1950 39 1 10.6559 1.8537 3.7093 40 1 12.6132 3.2416 4.2624 41 1 12.6223 5.6382 3.6974 42 1 10.6789 6.6445 2.5689 43 1 8.7259 5.2544 2.0064 44 1 10.4600 2.4825 0.8776 45 1 10.3394 0.7175 0.6808 46 1 9.6429 1.7998 -0.5489 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871344752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:56 Heat of formation + Delta-G solvation = -76.924539 kcal Electronic energy + Delta-G solvation = -28410.086026 eV Core-core repulsion = 24458.459894 eV Total energy + Delta-G solvation = -3951.626132 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71228 -41.22653 -40.06315 -38.04023 -37.55200 -36.76195 -34.23536 -32.72476 -31.73193 -31.61218 -29.54540 -28.75752 -26.93715 -26.31069 -24.47035 -23.39316 -22.66548 -21.90963 -20.68750 -20.63810 -19.13953 -18.65874 -18.09887 -17.85248 -17.64897 -17.35962 -16.73884 -16.33907 -15.85113 -15.83384 -15.66470 -15.33643 -15.00203 -14.59472 -14.51413 -14.44654 -14.16611 -14.05332 -13.85781 -13.75906 -13.46680 -13.29597 -13.08777 -13.01482 -12.83687 -12.68517 -12.57762 -12.18278 -11.95691 -11.86988 -11.78756 -11.74456 -11.62230 -11.23008 -10.98765 -10.92859 -10.43394 -9.87313 -9.74612 -9.48895 -8.61781 -6.06142 0.50280 0.57170 1.03986 1.17573 1.30536 1.39374 1.55450 1.74674 2.16174 2.54423 2.75412 2.90730 3.08493 3.66632 3.74929 3.86139 3.89315 3.93807 4.09197 4.19673 4.23087 4.27698 4.28836 4.33515 4.38229 4.41015 4.45644 4.52707 4.65577 4.67047 4.71129 4.79805 4.86222 4.90182 4.99509 5.14226 5.19896 5.21017 5.23608 5.24304 5.32231 5.46347 5.66431 5.68838 5.80506 6.03936 6.18866 6.24221 6.60268 6.93727 7.39733 7.74842 8.51734 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.003423 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.660767 B = 8178.683381 C = 9149.838230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.360 6.360 3 C 0.475 3.525 4 O -0.540 6.540 5 C -0.117 4.117 6 C 0.129 3.871 7 N -0.461 5.461 8 C -0.344 4.344 9 H 0.097 0.903 10 C 0.051 3.949 11 N -0.866 5.866 12 Si 0.884 3.116 13 H -0.275 1.275 14 H -0.279 1.279 15 H -0.259 1.259 16 C 0.499 3.501 17 O -0.617 6.617 18 C -0.156 4.156 19 H 0.116 0.884 20 C -0.084 4.084 21 H 0.109 0.891 22 C -0.055 4.055 23 C -0.115 4.115 24 C -0.119 4.119 25 C -0.127 4.127 26 C -0.126 4.126 27 C -0.135 4.135 28 C -0.101 4.101 29 H 0.103 0.897 30 C -0.116 4.116 31 H 0.061 0.939 32 H 0.138 0.862 33 H 0.062 0.938 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.280 0.720 39 H 0.135 0.865 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.134 0.866 43 H 0.106 0.894 44 H 0.062 0.938 45 H 0.081 0.919 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.205 -3.865 8.756 11.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.319 3.681 4 O -0.430 6.430 5 C -0.156 4.156 6 C 0.006 3.994 7 N -0.180 5.180 8 C -0.470 4.470 9 H 0.115 0.885 10 C -0.156 4.156 11 N -0.501 5.501 12 Si 0.709 3.291 13 H -0.201 1.201 14 H -0.205 1.205 15 H -0.183 1.183 16 C 0.290 3.710 17 O -0.504 6.504 18 C -0.177 4.177 19 H 0.134 0.866 20 C -0.103 4.103 21 H 0.127 0.873 22 C -0.055 4.055 23 C -0.132 4.132 24 C -0.137 4.137 25 C -0.145 4.145 26 C -0.144 4.144 27 C -0.153 4.153 28 C -0.120 4.120 29 H 0.121 0.879 30 C -0.173 4.173 31 H 0.080 0.920 32 H 0.156 0.844 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.153 0.847 40 H 0.167 0.833 41 H 0.164 0.836 42 H 0.152 0.848 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.637 -3.656 8.999 11.231 hybrid contribution -1.333 1.174 -0.528 1.853 sum 4.305 -2.482 8.471 9.821 Atomic orbital electron populations 1.23615 0.74554 1.05994 1.02562 1.86510 1.25314 1.32163 1.83641 1.23753 0.91967 0.81407 0.70937 1.90630 1.67867 1.37411 1.47087 1.21657 0.87115 0.99953 1.06863 1.21341 0.82406 0.94510 1.01170 1.43709 1.04031 1.64075 1.06145 1.18891 1.05380 1.34369 0.88400 0.88498 1.25578 0.97419 0.98141 0.94468 1.69938 1.43456 1.37065 0.99603 0.86908 0.79780 0.82871 0.79587 1.20075 1.20474 1.18330 1.20049 0.89440 0.79329 0.82157 1.90521 1.71229 1.55537 1.33096 1.21989 0.90072 1.03063 1.02600 0.86630 1.21122 0.96510 1.00806 0.91839 0.87334 1.19098 0.94256 0.93289 0.98819 1.21129 0.92797 1.00826 0.98491 1.21452 0.98481 0.94057 0.99715 1.21470 0.98672 0.95775 0.98606 1.21357 0.93560 1.00463 0.99029 1.21176 0.99083 0.94056 1.00979 1.22410 0.97726 0.93198 0.98684 0.87869 1.21367 0.93668 1.03057 0.99175 0.92020 0.84389 0.91911 0.86275 0.86871 0.92274 0.91770 0.90971 0.84725 0.83302 0.83610 0.84795 0.87583 0.91943 0.90062 0.92767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.56 113.37 1.20 1.76 16 2 O -0.36 -10.95 10.56 -51.38 -0.54 -11.49 16 3 C 0.48 17.51 7.96 71.23 0.57 18.08 16 4 O -0.54 -22.61 15.73 21.95 0.35 -22.27 16 5 C -0.12 -4.52 6.10 29.84 0.18 -4.34 16 6 C 0.13 5.91 2.71 86.38 0.23 6.14 16 7 N -0.46 -21.70 2.23 -635.53 -1.42 -23.12 16 8 C -0.34 -17.15 8.92 84.04 0.75 -16.40 16 9 H 0.10 5.03 7.49 -2.91 -0.02 5.00 16 10 C 0.05 2.63 5.09 84.93 0.43 3.06 16 11 N -0.87 -45.93 13.96 21.67 0.30 -45.63 16 12 Si 0.88 41.39 26.14 68.60 1.79 43.18 16 13 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 14 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 15 H -0.26 -12.40 5.58 99.48 0.55 -11.85 16 16 C 0.50 22.75 7.35 87.65 0.64 23.39 16 17 O -0.62 -30.28 15.97 -3.07 -0.05 -30.33 16 18 C -0.16 -6.03 3.66 -11.54 -0.04 -6.08 16 19 H 0.12 4.64 7.16 -2.38 -0.02 4.62 16 20 C -0.08 -2.75 5.44 -11.51 -0.06 -2.82 16 21 H 0.11 3.82 7.70 -2.39 -0.02 3.80 16 22 C -0.05 -1.55 3.87 -19.87 -0.08 -1.63 16 23 C -0.11 -2.62 9.13 22.27 0.20 -2.42 16 24 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 25 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 26 C -0.13 -2.95 10.05 22.27 0.22 -2.72 16 27 C -0.13 -3.89 9.22 22.27 0.21 -3.69 16 28 C -0.10 -3.24 6.11 -10.77 -0.07 -3.31 16 29 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 30 C -0.12 -3.15 9.94 71.98 0.72 -2.43 16 31 H 0.06 1.36 8.13 -2.38 -0.02 1.34 16 32 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 34 H 0.12 4.46 8.14 -2.38 -0.02 4.44 16 35 H 0.11 4.22 8.09 -2.39 -0.02 4.20 16 36 H 0.06 2.84 7.59 -2.39 -0.02 2.82 16 37 H 0.06 3.06 3.98 -2.39 -0.01 3.05 16 38 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 39 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 43 H 0.11 3.35 7.29 -2.91 -0.02 3.33 16 44 H 0.06 1.67 5.98 -2.39 -0.01 1.65 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -63.80 383.36 6.81 -56.98 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.83 Total: 30.34 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: 5.55 Total: 2.33 kcal Atomic # 7 Polarization: -67.63 SS G_CDS: -1.12 Total: -68.75 kcal Atomic # 8 Polarization: -63.84 SS G_CDS: -0.25 Total: -64.09 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.79 Total: 43.18 kcal Total: -63.80 6.81 -56.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871344752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.940 kcal (2) G-P(sol) polarization free energy of solvation -63.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds