Wall clock time and date at job start Tue Mar 31 2020 15:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 H 1.09001 * 109.47393 * 54.70238 * 3 2 1 5 5 N 1.46508 * 109.46937 * 294.70625 * 3 2 1 6 6 S 1.65591 * 120.00147 * 115.29950 * 5 3 2 7 7 O 1.42101 * 104.27566 * 176.93291 * 6 5 3 8 8 O 1.42105 * 104.27906 * 304.78811 * 6 5 3 9 9 C 1.81398 * 104.45168 * 60.85909 * 6 5 3 10 10 C 1.53002 * 109.47263 * 176.06403 * 9 6 5 11 11 C 1.50706 * 115.54592 * 62.79287 * 10 9 6 12 12 H 1.07999 * 119.99449 * 264.65533 * 11 10 9 13 13 C 1.37870 * 120.00207 * 84.65645 * 11 10 9 14 14 N 1.31517 * 119.99950 * 2.02770 * 13 11 10 15 15 Si 1.86801 * 120.00182 * 182.02388 * 13 11 10 16 16 H 1.48505 * 109.46960 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47046 * 119.99910 * 15 13 11 18 18 H 1.48496 * 109.47364 * 240.00473 * 15 13 11 19 19 C 1.53000 * 117.50205 * 277.11963 * 10 9 6 20 20 C 1.53001 * 117.50150 * 208.45900 * 10 9 6 21 21 C 1.52997 * 109.47076 * 174.70594 * 3 2 1 22 22 H 1.09000 * 109.52245 * 304.86872 * 21 3 2 23 23 C 1.53183 * 109.52234 * 184.68460 * 21 3 2 24 24 C 1.53176 * 109.03548 * 183.11355 * 23 21 3 25 25 C 1.53096 * 109.16436 * 56.98219 * 24 23 21 26 26 O 1.42902 * 109.40977 * 302.38628 * 25 24 23 27 27 C 1.42905 * 114.09523 * 61.16527 * 26 25 24 28 28 H 1.08997 * 109.47129 * 186.44008 * 1 2 3 29 29 H 1.09007 * 109.46804 * 306.44008 * 1 2 3 30 30 H 1.08998 * 109.47005 * 66.43514 * 1 2 3 31 31 H 1.08998 * 109.46750 * 240.00103 * 2 1 3 32 32 H 1.08995 * 109.47140 * 119.99725 * 2 1 3 33 33 H 0.97002 * 119.99579 * 295.29972 * 5 3 2 34 34 H 1.08999 * 109.47198 * 296.07114 * 9 6 5 35 35 H 1.09007 * 109.46854 * 56.06729 * 9 6 5 36 36 H 0.97005 * 119.99988 * 185.00750 * 14 13 11 37 37 H 1.08999 * 117.49440 * 359.97438 * 19 10 9 38 38 H 1.08999 * 117.49927 * 145.01824 * 19 10 9 39 39 H 1.09000 * 117.50136 * 214.98318 * 20 10 9 40 40 H 1.09003 * 117.49704 * 359.97438 * 20 10 9 41 41 H 1.09002 * 109.54130 * 302.97799 * 23 21 3 42 42 H 1.08997 * 109.54202 * 63.24486 * 23 21 3 43 43 H 1.09000 * 109.52247 * 297.07319 * 24 23 21 44 44 H 1.09006 * 109.57046 * 176.91780 * 24 23 21 45 45 H 1.08993 * 109.47625 * 182.40664 * 25 24 23 46 46 H 1.08998 * 109.49275 * 62.37839 * 25 24 23 47 47 H 1.09005 * 109.47760 * 178.85679 * 27 26 25 48 48 H 1.09000 * 109.48362 * 58.82155 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6014 1.9830 0.8387 5 7 1.6585 2.0953 -1.2549 6 16 0.6056 3.3732 -1.2366 7 8 0.5308 3.7851 -2.5946 8 8 -0.5392 2.8745 -0.5582 9 6 1.4406 4.6336 -0.2342 10 6 0.6025 5.9136 -0.2224 11 6 -0.7636 5.7902 0.4020 12 1 -1.6265 5.6031 -0.2198 13 6 -0.9116 5.9161 1.7670 14 7 0.1332 6.1836 2.5198 15 14 -2.5959 5.7071 2.5471 16 1 -3.5976 5.4129 1.4909 17 1 -2.5560 4.5837 3.5174 18 1 -2.9732 6.9579 3.2530 19 6 0.7534 6.8678 -1.4088 20 6 1.3425 7.2410 -0.0461 21 6 3.5642 1.4445 0.1331 22 1 3.8530 0.8838 1.0221 23 6 4.0659 2.8870 0.2508 24 6 5.5967 2.8807 0.3050 25 6 6.1408 2.1762 -0.9406 26 8 5.6113 0.8505 -1.0057 27 6 4.1868 0.7955 -1.1058 28 1 -0.3633 -1.0211 0.1153 29 1 -0.3633 0.6105 0.8268 30 1 -0.3633 0.4108 -0.9420 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0228 1.7790 -2.0964 34 1 1.5588 4.2672 0.7855 35 1 2.4214 4.8454 -0.6601 36 1 0.0435 6.2004 3.4855 37 1 1.4502 6.5839 -2.1974 38 1 -0.1352 7.4067 -1.7374 39 1 0.8413 8.0253 0.5211 40 1 2.4265 7.2024 0.0619 41 1 3.7341 3.4602 -0.6149 42 1 3.6706 3.3374 1.1613 43 1 5.9274 2.3497 1.1976 44 1 5.9653 3.9062 0.3337 45 1 7.2285 2.1310 -0.8865 46 1 5.8438 2.7304 -1.8309 47 1 3.8670 -0.2446 -1.1708 48 1 3.8641 1.3317 -1.9982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882760548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:22 Heat of formation + Delta-G solvation = -114.773218 kcal Electronic energy + Delta-G solvation = -29258.988049 eV Core-core repulsion = 25441.164627 eV Total energy + Delta-G solvation = -3817.823423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.86715 -37.03803 -36.77751 -36.17079 -35.06474 -33.31402 -32.04990 -31.50992 -30.87622 -28.29417 -26.02514 -25.53467 -25.08987 -22.90825 -21.21308 -20.88500 -20.06789 -19.79352 -18.68428 -17.08625 -16.58292 -16.40607 -15.97817 -15.66362 -15.23133 -14.98064 -14.70712 -14.55781 -14.30662 -14.22371 -13.88080 -13.43024 -13.20228 -13.14905 -12.67213 -12.32534 -12.11756 -11.84174 -11.75182 -11.57422 -11.40511 -11.27117 -11.17462 -11.06631 -10.95986 -10.94411 -10.87777 -10.82127 -10.63608 -10.53477 -10.45579 -10.28870 -10.09778 -9.67591 -9.50887 -9.16150 -9.05933 -8.55386 -8.09990 -6.15746 -4.26872 1.05999 3.27812 3.35884 3.43227 3.44542 3.75339 4.36973 4.47887 4.51655 4.64833 4.74197 4.85188 4.98348 5.02989 5.12168 5.15962 5.19842 5.20473 5.23696 5.35553 5.38641 5.51514 5.58907 5.62983 5.75281 5.76999 5.83676 5.90756 5.94432 6.01570 6.04724 6.12319 6.14529 6.22414 6.29834 6.33358 6.45223 6.59355 6.68199 6.70215 6.96938 7.07175 7.18263 7.26773 7.42112 7.78177 8.17883 8.79486 9.45201 10.91737 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.005027 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.513934 B = 5568.066785 C = 6173.509936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.159 3.841 4 H 0.095 0.905 5 N -1.126 6.126 6 S 2.604 3.396 7 O -0.978 6.978 8 O -0.942 6.942 9 C -0.555 4.555 10 C 0.041 3.959 11 C -0.511 4.511 12 H 0.068 0.932 13 C 0.082 3.918 14 N -0.875 5.875 15 Si 0.890 3.110 16 H -0.268 1.268 17 H -0.280 1.280 18 H -0.284 1.284 19 C -0.211 4.211 20 C -0.135 4.135 21 C -0.131 4.131 22 H 0.090 0.910 23 C -0.128 4.128 24 C -0.154 4.154 25 C 0.058 3.942 26 O -0.384 6.384 27 C 0.065 3.935 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.407 0.593 34 H 0.129 0.871 35 H 0.100 0.900 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.090 0.910 46 H 0.050 0.950 47 H 0.095 0.905 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.746 -9.862 -3.696 15.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.051 3.949 4 H 0.113 0.887 5 N -0.882 5.882 6 S 2.701 3.299 7 O -0.969 6.969 8 O -0.932 6.932 9 C -0.687 4.687 10 C 0.039 3.961 11 C -0.548 4.548 12 H 0.086 0.914 13 C -0.123 4.123 14 N -0.511 5.511 15 Si 0.717 3.283 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.210 1.210 19 C -0.248 4.248 20 C -0.174 4.174 21 C -0.151 4.151 22 H 0.108 0.892 23 C -0.166 4.166 24 C -0.192 4.192 25 C -0.018 4.018 26 O -0.303 6.303 27 C -0.012 4.012 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.240 0.760 34 H 0.147 0.853 35 H 0.118 0.882 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.068 0.932 47 H 0.113 0.887 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.965 -9.888 -3.770 14.536 hybrid contribution -0.153 0.279 0.673 0.745 sum 9.812 -9.610 -3.097 14.079 Atomic orbital electron populations 1.21781 0.94465 1.00834 1.03864 1.21916 0.97431 0.95605 1.02052 1.20797 0.93060 0.94661 0.86362 0.88655 1.56128 1.67695 1.50850 1.13570 1.05242 0.74899 0.74606 0.75203 1.93504 1.86395 1.82785 1.34168 1.93557 1.45966 1.77419 1.76214 1.30094 1.09439 1.14850 1.14358 1.18289 0.95155 0.85231 0.97456 1.20566 0.90729 1.51120 0.92372 0.91404 1.24924 0.96959 0.93200 0.97179 1.70016 1.29619 1.46604 1.04829 0.86541 0.84537 0.77622 0.79559 1.19171 1.20581 1.21021 1.23195 1.02729 1.07333 0.91536 1.22510 0.96834 1.00931 0.97101 1.22176 0.95276 0.97565 1.00115 0.89221 1.21858 0.95174 0.96059 1.03493 1.22171 0.96406 1.01417 0.99200 1.22595 0.98532 0.83720 0.96990 1.87912 1.20730 1.27068 1.94558 1.22663 0.80553 1.01428 0.96576 0.93460 0.91498 0.92101 0.91710 0.91152 0.75969 0.85257 0.88191 0.92884 0.90915 0.89608 0.89355 0.91722 0.91276 0.90375 0.91093 0.90743 0.89170 0.93182 0.88700 0.92907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.79 37.16 0.33 -1.74 16 2 C -0.13 -1.45 5.23 -26.73 -0.14 -1.59 16 3 C 0.16 1.96 1.80 -67.93 -0.12 1.84 16 4 H 0.10 1.31 7.35 -51.93 -0.38 0.93 16 5 N -1.13 -15.50 4.07 -4.89 -0.02 -15.52 16 6 S 2.60 49.94 5.01 -107.50 -0.54 49.40 16 7 O -0.98 -21.02 18.08 -57.54 -1.04 -22.06 16 8 O -0.94 -21.03 15.56 -57.54 -0.90 -21.92 16 9 C -0.55 -10.93 4.67 37.16 0.17 -10.75 16 10 C 0.04 0.97 1.42 -155.66 -0.22 0.75 16 11 C -0.51 -13.63 7.94 -34.44 -0.27 -13.91 16 12 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 13 C 0.08 2.19 5.43 -17.82 -0.10 2.09 16 14 N -0.87 -23.41 12.72 55.43 0.71 -22.70 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 C -0.21 -4.56 9.96 -26.69 -0.27 -4.83 16 20 C -0.13 -3.01 9.24 -26.69 -0.25 -3.26 16 21 C -0.13 -1.40 2.22 -90.48 -0.20 -1.60 16 22 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 23 C -0.13 -1.48 4.46 -26.55 -0.12 -1.60 16 24 C -0.15 -1.55 6.14 -26.59 -0.16 -1.72 16 25 C 0.06 0.57 6.84 37.21 0.25 0.83 16 26 O -0.38 -4.40 10.77 -35.23 -0.38 -4.78 16 27 C 0.06 0.66 5.56 37.20 0.21 0.87 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.03 8.01 -51.92 -0.42 0.62 16 30 H 0.06 0.92 7.27 -51.93 -0.38 0.54 16 31 H 0.06 0.62 6.89 -51.93 -0.36 0.26 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.41 4.75 7.21 -34.47 -0.25 4.50 16 34 H 0.13 2.59 7.49 -51.92 -0.39 2.20 16 35 H 0.10 1.67 6.52 -51.92 -0.34 1.34 16 36 H 0.26 6.69 8.32 -40.82 -0.34 6.35 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 38 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 39 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 40 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.07 0.83 5.71 -51.93 -0.30 0.53 16 42 H 0.08 0.97 7.91 -51.93 -0.41 0.56 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 0.85 6.82 -51.93 -0.35 0.50 16 48 H 0.05 0.52 6.54 -51.93 -0.34 0.19 16 LS Contribution 380.16 15.07 5.73 5.73 Total: -1.00 -31.50 380.16 -10.45 -41.95 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -8.11 Total: 8.30 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: -0.89 Total: -34.62 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.69 Total: -38.22 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -2.31 Total: -48.75 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 49.94 SS G_CDS: -0.54 Total: 49.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.50 -10.45 -41.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882760548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.824 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds