Wall clock time and date at job start Tue Mar 31 2020 15:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47316 * 2 1 4 4 H 1.09001 * 109.47393 * 54.70238 * 3 2 1 5 5 N 1.46508 * 109.46937 * 294.70625 * 3 2 1 6 6 S 1.65591 * 120.00147 * 115.29950 * 5 3 2 7 7 O 1.42101 * 104.27566 * 176.93291 * 6 5 3 8 8 O 1.42105 * 104.27906 * 304.78811 * 6 5 3 9 9 C 1.81398 * 104.45168 * 60.85909 * 6 5 3 10 10 C 1.53002 * 109.47263 * 176.06403 * 9 6 5 11 11 C 1.50706 * 115.54592 * 62.79287 * 10 9 6 12 12 H 1.07999 * 119.99449 * 264.65533 * 11 10 9 13 13 C 1.37870 * 120.00207 * 84.65645 * 11 10 9 14 14 N 1.31517 * 119.99950 * 2.02770 * 13 11 10 15 15 Si 1.86801 * 120.00182 * 182.02388 * 13 11 10 16 16 H 1.48505 * 109.46960 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47046 * 119.99910 * 15 13 11 18 18 H 1.48496 * 109.47364 * 240.00473 * 15 13 11 19 19 C 1.53000 * 117.50205 * 277.11963 * 10 9 6 20 20 C 1.53001 * 117.50150 * 208.45900 * 10 9 6 21 21 C 1.52997 * 109.47076 * 174.70594 * 3 2 1 22 22 H 1.09000 * 109.52245 * 304.86872 * 21 3 2 23 23 C 1.53183 * 109.52234 * 184.68460 * 21 3 2 24 24 C 1.53176 * 109.03548 * 183.11355 * 23 21 3 25 25 C 1.53096 * 109.16436 * 56.98219 * 24 23 21 26 26 O 1.42902 * 109.40977 * 302.38628 * 25 24 23 27 27 C 1.42905 * 114.09523 * 61.16527 * 26 25 24 28 28 H 1.08997 * 109.47129 * 186.44008 * 1 2 3 29 29 H 1.09007 * 109.46804 * 306.44008 * 1 2 3 30 30 H 1.08998 * 109.47005 * 66.43514 * 1 2 3 31 31 H 1.08998 * 109.46750 * 240.00103 * 2 1 3 32 32 H 1.08995 * 109.47140 * 119.99725 * 2 1 3 33 33 H 0.97002 * 119.99579 * 295.29972 * 5 3 2 34 34 H 1.08999 * 109.47198 * 296.07114 * 9 6 5 35 35 H 1.09007 * 109.46854 * 56.06729 * 9 6 5 36 36 H 0.97005 * 119.99988 * 185.00750 * 14 13 11 37 37 H 1.08999 * 117.49440 * 359.97438 * 19 10 9 38 38 H 1.08999 * 117.49927 * 145.01824 * 19 10 9 39 39 H 1.09000 * 117.50136 * 214.98318 * 20 10 9 40 40 H 1.09003 * 117.49704 * 359.97438 * 20 10 9 41 41 H 1.09002 * 109.54130 * 302.97799 * 23 21 3 42 42 H 1.08997 * 109.54202 * 63.24486 * 23 21 3 43 43 H 1.09000 * 109.52247 * 297.07319 * 24 23 21 44 44 H 1.09006 * 109.57046 * 176.91780 * 24 23 21 45 45 H 1.08993 * 109.47625 * 182.40664 * 25 24 23 46 46 H 1.08998 * 109.49275 * 62.37839 * 25 24 23 47 47 H 1.09005 * 109.47760 * 178.85679 * 27 26 25 48 48 H 1.09000 * 109.48362 * 58.82155 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6014 1.9830 0.8387 5 7 1.6585 2.0953 -1.2549 6 16 0.6056 3.3732 -1.2366 7 8 0.5308 3.7851 -2.5946 8 8 -0.5392 2.8745 -0.5582 9 6 1.4406 4.6336 -0.2342 10 6 0.6025 5.9136 -0.2224 11 6 -0.7636 5.7902 0.4020 12 1 -1.6265 5.6031 -0.2198 13 6 -0.9116 5.9161 1.7670 14 7 0.1332 6.1836 2.5198 15 14 -2.5959 5.7071 2.5471 16 1 -3.5976 5.4129 1.4909 17 1 -2.5560 4.5837 3.5174 18 1 -2.9732 6.9579 3.2530 19 6 0.7534 6.8678 -1.4088 20 6 1.3425 7.2410 -0.0461 21 6 3.5642 1.4445 0.1331 22 1 3.8530 0.8838 1.0221 23 6 4.0659 2.8870 0.2508 24 6 5.5967 2.8807 0.3050 25 6 6.1408 2.1762 -0.9406 26 8 5.6113 0.8505 -1.0057 27 6 4.1868 0.7955 -1.1058 28 1 -0.3633 -1.0211 0.1153 29 1 -0.3633 0.6105 0.8268 30 1 -0.3633 0.4108 -0.9420 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0228 1.7790 -2.0964 34 1 1.5588 4.2672 0.7855 35 1 2.4214 4.8454 -0.6601 36 1 0.0435 6.2004 3.4855 37 1 1.4502 6.5839 -2.1974 38 1 -0.1352 7.4067 -1.7374 39 1 0.8413 8.0253 0.5211 40 1 2.4265 7.2024 0.0619 41 1 3.7341 3.4602 -0.6149 42 1 3.6706 3.3374 1.1613 43 1 5.9274 2.3497 1.1976 44 1 5.9653 3.9062 0.3337 45 1 7.2285 2.1310 -0.8865 46 1 5.8438 2.7304 -1.8309 47 1 3.8670 -0.2446 -1.1708 48 1 3.8641 1.3317 -1.9982 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882760548.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:21 Heat of formation + Delta-G solvation = -135.609422 kcal Electronic energy + Delta-G solvation = -29259.891575 eV Core-core repulsion = 25441.164627 eV Total energy + Delta-G solvation = -3818.726948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.73013 -38.56898 -38.13570 -37.67619 -36.70803 -34.18647 -34.06294 -32.61734 -31.74778 -29.91921 -27.51968 -26.96378 -25.97400 -23.77106 -22.97805 -21.84792 -21.53579 -21.03515 -20.13072 -18.53032 -18.28100 -17.52368 -16.91870 -16.81165 -16.69445 -16.61758 -16.16537 -15.67971 -15.56579 -15.26433 -15.20638 -14.86623 -14.50954 -14.09688 -13.82751 -13.68897 -13.52657 -13.37578 -13.12542 -13.00673 -12.88317 -12.84855 -12.60765 -12.58108 -12.46021 -12.29581 -12.18399 -11.99496 -11.92619 -11.86306 -11.74172 -11.58106 -11.43114 -11.09829 -10.96840 -10.49941 -10.43601 -10.23929 -9.85126 -8.19153 -6.33521 -0.47331 1.35443 1.39710 1.50900 2.06533 2.39819 2.93959 3.01240 3.09176 3.38405 3.50727 3.59496 3.79403 3.88298 3.94603 4.06671 4.18326 4.24190 4.28598 4.33292 4.40572 4.44872 4.49437 4.58561 4.61456 4.69435 4.79087 4.81716 4.87599 4.88131 4.96696 4.97251 5.04529 5.11234 5.16250 5.16443 5.22194 5.26730 5.39263 5.45750 5.46678 5.58205 5.61451 5.71722 6.19936 6.22979 6.30958 6.72616 7.39196 8.87838 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013047 B = 0.005027 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.513934 B = 5568.066785 C = 6173.509936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C 0.155 3.845 4 H 0.077 0.923 5 N -1.106 6.106 6 S 2.618 3.382 7 O -1.003 7.003 8 O -0.980 6.980 9 C -0.548 4.548 10 C 0.012 3.988 11 C -0.527 4.527 12 H 0.045 0.955 13 C 0.047 3.953 14 N -0.889 5.889 15 Si 0.930 3.070 16 H -0.276 1.276 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.202 4.202 20 C -0.131 4.131 21 C -0.121 4.121 22 H 0.101 0.899 23 C -0.135 4.135 24 C -0.151 4.151 25 C 0.055 3.945 26 O -0.396 6.396 27 C 0.062 3.938 28 H 0.066 0.934 29 H 0.039 0.961 30 H 0.039 0.961 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.420 0.580 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.080 0.920 45 H 0.106 0.894 46 H 0.052 0.948 47 H 0.111 0.889 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.653 -11.211 -3.977 17.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.165 4.165 3 C 0.047 3.953 4 H 0.095 0.905 5 N -0.868 5.868 6 S 2.715 3.285 7 O -0.993 6.993 8 O -0.969 6.969 9 C -0.681 4.681 10 C 0.009 3.991 11 C -0.564 4.564 12 H 0.064 0.936 13 C -0.156 4.156 14 N -0.526 5.526 15 Si 0.755 3.245 16 H -0.201 1.201 17 H -0.200 1.200 18 H -0.200 1.200 19 C -0.239 4.239 20 C -0.170 4.170 21 C -0.141 4.141 22 H 0.119 0.881 23 C -0.173 4.173 24 C -0.188 4.188 25 C -0.022 4.022 26 O -0.315 6.315 27 C -0.014 4.014 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.257 0.743 34 H 0.142 0.858 35 H 0.148 0.852 36 H 0.074 0.926 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.098 0.902 45 H 0.124 0.876 46 H 0.071 0.929 47 H 0.129 0.871 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.874 -11.226 -4.058 16.838 hybrid contribution -0.738 0.687 0.747 1.255 sum 11.136 -10.539 -3.312 15.686 Atomic orbital electron populations 1.21791 0.96571 1.01305 1.01596 1.21934 0.95402 0.94874 1.04315 1.20971 0.94386 0.95130 0.84764 0.90494 1.55585 1.66886 1.49257 1.15046 1.04487 0.74882 0.74979 0.74126 1.93460 1.87012 1.83609 1.35250 1.93516 1.48453 1.78155 1.76776 1.29959 1.10290 1.13330 1.14506 1.18416 0.94684 0.87168 0.98790 1.20692 0.91843 1.51265 0.92645 0.93649 1.25407 0.99274 0.93320 0.97577 1.70047 1.30450 1.47094 1.04998 0.85939 0.81723 0.78036 0.78762 1.20117 1.19979 1.19965 1.23243 1.02876 1.06099 0.91677 1.22439 0.97757 0.99588 0.97226 1.22095 0.93531 0.97361 1.01136 0.88111 1.21898 0.96433 0.96443 1.02523 1.22148 0.95144 1.01959 0.99575 1.22724 0.99482 0.83169 0.96804 1.87905 1.21137 1.27879 1.94560 1.22758 0.80209 1.02395 0.96060 0.91486 0.94165 0.94146 0.89370 0.88863 0.74282 0.85844 0.85169 0.92642 0.88522 0.90241 0.91619 0.89503 0.91870 0.91729 0.90867 0.90153 0.87585 0.92933 0.87062 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 8.79 71.98 0.63 -3.47 16 2 C -0.13 -2.49 5.23 30.59 0.16 -2.33 16 3 C 0.15 3.58 1.80 44.99 0.08 3.66 16 4 H 0.08 2.11 7.35 -2.39 -0.02 2.09 16 5 N -1.11 -29.06 4.07 -169.38 -0.69 -29.75 16 6 S 2.62 100.27 5.01 -56.49 -0.28 99.99 16 7 O -1.00 -42.69 18.08 -127.65 -2.31 -45.00 16 8 O -0.98 -44.86 15.56 -127.65 -1.99 -46.84 16 9 C -0.55 -21.35 4.67 71.98 0.34 -21.01 16 10 C 0.01 0.54 1.42 -52.93 -0.08 0.47 16 11 C -0.53 -28.76 7.94 25.60 0.20 -28.55 16 12 H 0.05 2.61 7.81 -2.91 -0.02 2.59 16 13 C 0.05 2.54 5.43 84.65 0.46 3.00 16 14 N -0.89 -47.88 12.72 21.44 0.27 -47.61 16 15 Si 0.93 43.97 29.54 68.60 2.03 46.00 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 19 C -0.20 -8.61 9.96 30.62 0.30 -8.30 16 20 C -0.13 -5.79 9.24 30.62 0.28 -5.51 16 21 C -0.12 -2.30 2.22 -10.70 -0.02 -2.32 16 22 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 23 C -0.14 -2.88 4.46 30.71 0.14 -2.74 16 24 C -0.15 -2.68 6.14 30.69 0.19 -2.49 16 25 C 0.05 0.92 6.84 72.01 0.49 1.42 16 26 O -0.40 -7.86 10.77 -148.98 -1.60 -9.46 16 27 C 0.06 1.08 5.56 72.01 0.40 1.48 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.04 1.25 8.01 -2.38 -0.02 1.24 16 30 H 0.04 1.21 7.27 -2.39 -0.02 1.19 16 31 H 0.09 1.36 6.89 -2.39 -0.02 1.35 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.42 8.96 7.21 -96.75 -0.70 8.26 16 34 H 0.12 4.96 7.49 -2.39 -0.02 4.94 16 35 H 0.13 4.15 6.52 -2.39 -0.02 4.13 16 36 H 0.26 13.54 8.32 -92.70 -0.77 12.77 16 37 H 0.10 3.63 8.14 -2.39 -0.02 3.61 16 38 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 39 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 41 H 0.06 1.39 5.71 -2.39 -0.01 1.37 16 42 H 0.06 1.54 7.91 -2.39 -0.02 1.52 16 43 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 45 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.11 1.56 6.82 -2.38 -0.02 1.54 16 48 H 0.06 0.93 6.54 -2.39 -0.02 0.91 16 Total: -1.00 -68.05 380.16 -0.74 -68.79 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.25 Total: 30.59 kcal Atomic # 6 Polarization: -70.29 SS G_CDS: 3.58 Total: -66.71 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -0.42 Total: -77.36 kcal Atomic # 8 Polarization: -95.40 SS G_CDS: -5.90 Total: -101.30 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 100.27 SS G_CDS: -0.28 Total: 99.99 kcal Total: -68.05 -0.74 -68.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882760548.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.820 kcal (2) G-P(sol) polarization free energy of solvation -68.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds