Wall clock time and date at job start Tue Mar 31 2020 15:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46792 * 2 1 4 4 H 1.08999 * 109.47690 * 304.48790 * 3 2 1 5 5 N 1.46498 * 109.46844 * 64.48845 * 3 2 1 6 6 S 1.65603 * 120.00042 * 234.05694 * 5 3 2 7 7 O 1.42099 * 104.28140 * 178.87667 * 6 5 3 8 8 O 1.42108 * 104.27637 * 306.73676 * 6 5 3 9 9 C 1.81398 * 104.44929 * 62.80266 * 6 5 3 10 10 C 1.53000 * 109.47392 * 174.13132 * 9 6 5 11 11 C 1.50700 * 115.54711 * 38.45321 * 10 9 6 12 12 H 1.07998 * 120.00037 * 270.69137 * 11 10 9 13 13 C 1.37880 * 119.99911 * 90.68950 * 11 10 9 14 14 N 1.31516 * 119.99902 * 3.71176 * 13 11 10 15 15 Si 1.86799 * 119.99783 * 183.70774 * 13 11 10 16 16 H 1.48503 * 109.46810 * 90.00574 * 15 13 11 17 17 H 1.48505 * 109.46907 * 210.00057 * 15 13 11 18 18 H 1.48495 * 109.47468 * 330.00145 * 15 13 11 19 19 C 1.52999 * 117.49974 * 252.74256 * 10 9 6 20 20 C 1.52998 * 60.00083 * 252.51011 * 19 10 9 21 21 C 1.53004 * 109.46978 * 184.48643 * 3 2 1 22 22 H 1.08993 * 109.57038 * 59.84655 * 21 3 2 23 23 C 1.53176 * 109.52120 * 180.02562 * 21 3 2 24 24 C 1.53173 * 109.11092 * 176.83884 * 23 21 3 25 25 C 1.53100 * 109.15930 * 303.15864 * 24 23 21 26 26 O 1.42895 * 109.48971 * 57.46701 * 25 24 23 27 27 C 1.42899 * 114.10170 * 298.89206 * 26 25 24 28 28 H 1.09005 * 109.47300 * 302.84743 * 1 2 3 29 29 H 1.08994 * 109.47475 * 62.85363 * 1 2 3 30 30 H 1.09001 * 109.46940 * 182.85502 * 1 2 3 31 31 H 1.08997 * 109.46818 * 240.00898 * 2 1 3 32 32 H 1.08991 * 109.47673 * 120.00334 * 2 1 3 33 33 H 0.96997 * 120.00292 * 54.06123 * 5 3 2 34 34 H 1.09002 * 109.47558 * 294.13791 * 9 6 5 35 35 H 1.09009 * 109.47360 * 54.13113 * 9 6 5 36 36 H 0.97006 * 119.99494 * 185.00652 * 14 13 11 37 37 H 1.09000 * 117.50076 * 0.02562 * 19 10 9 38 38 H 1.09005 * 117.49557 * 145.02147 * 19 10 9 39 39 H 1.09001 * 117.49854 * 252.50779 * 20 19 10 40 40 H 1.09002 * 117.49437 * 107.49349 * 20 19 10 41 41 H 1.09004 * 109.54338 * 296.75501 * 23 21 3 42 42 H 1.09009 * 109.54243 * 56.93086 * 23 21 3 43 43 H 1.09011 * 109.52024 * 62.97193 * 24 23 21 44 44 H 1.08999 * 109.52702 * 183.15659 * 24 23 21 45 45 H 1.09000 * 109.40291 * 297.48806 * 25 24 23 46 46 H 1.09005 * 109.49355 * 177.50872 * 25 24 23 47 47 H 1.09002 * 109.47881 * 301.17630 * 27 26 25 48 48 H 1.09000 * 109.48375 * 181.13570 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6124 1.9791 -0.8470 5 7 1.6418 2.1012 1.2466 6 16 0.8072 3.5307 1.1978 7 8 0.5758 3.8482 2.5634 8 8 1.6024 4.3728 0.3744 9 6 -0.7515 3.1167 0.3675 10 6 -1.6801 4.3325 0.3902 11 6 -1.0093 5.6665 0.1857 12 1 -0.6336 6.2178 1.0350 13 6 -0.8753 6.1830 -1.0856 14 7 -1.3968 5.5473 -2.1120 15 14 0.0471 7.7858 -1.3500 16 1 1.4847 7.4966 -1.5844 17 1 -0.5147 8.4912 -2.5299 18 1 -0.0956 8.6434 -0.1462 19 6 -2.8847 4.2840 1.3321 20 6 -3.0894 4.1559 -0.1787 21 6 3.5658 1.4441 -0.1128 22 1 3.8639 0.9519 -1.0385 23 6 4.0776 2.8878 -0.1123 24 6 5.6090 2.8770 -0.1458 25 6 6.1320 2.0726 1.0473 26 8 5.5937 0.7497 1.0032 27 6 4.1678 0.6970 1.0802 28 1 -0.3634 0.5574 0.8634 29 1 -0.3634 0.4689 -0.9144 30 1 -0.3633 -1.0264 0.0512 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8898 33 1 1.8670 1.7000 2.1005 34 1 -0.5490 2.8334 -0.6654 35 1 -1.2294 2.2850 0.8853 36 1 -1.2410 5.8711 -3.0131 37 1 -3.0156 3.3861 1.9360 38 1 -3.1923 5.2171 1.8043 39 1 -3.5316 5.0046 -0.7004 40 1 -3.3551 3.1734 -0.5690 41 1 3.6973 3.4098 -0.9904 42 1 3.7363 3.3954 0.7900 43 1 5.9498 2.4149 -1.0725 44 1 5.9819 3.8996 -0.0891 45 1 5.8262 2.5588 1.9737 46 1 7.2201 2.0240 1.0043 47 1 3.8363 1.1652 2.0071 48 1 3.8408 -0.3426 1.0606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882760549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:26 Heat of formation + Delta-G solvation = -114.643433 kcal Electronic energy + Delta-G solvation = -29210.486887 eV Core-core repulsion = 25392.669092 eV Total energy + Delta-G solvation = -3817.817795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.75926 -37.01967 -36.73304 -36.08155 -34.94756 -33.19276 -32.03656 -31.53747 -30.88369 -28.24429 -26.07248 -25.43796 -25.04572 -22.93565 -21.14981 -20.88242 -19.94765 -19.65840 -18.68624 -17.02184 -16.55088 -16.24188 -16.02049 -15.60148 -15.14591 -14.89669 -14.66170 -14.58350 -14.30764 -14.13790 -13.76200 -13.37398 -13.23671 -13.04666 -12.56398 -12.37909 -12.30808 -11.84798 -11.78438 -11.59045 -11.29970 -11.22082 -11.08819 -11.04972 -10.92564 -10.87216 -10.80186 -10.76171 -10.63006 -10.50132 -10.30343 -10.16239 -10.05393 -9.67651 -9.43048 -9.16528 -9.00209 -8.46714 -8.10119 -6.16529 -4.32385 1.15645 3.33431 3.40102 3.44759 3.56008 3.83378 4.39936 4.54431 4.63811 4.76395 4.82540 4.99087 5.00063 5.08800 5.12518 5.14866 5.16381 5.27623 5.29694 5.42414 5.46180 5.53550 5.59845 5.65223 5.77637 5.82997 5.86945 5.92526 5.93775 6.00778 6.04011 6.12541 6.21855 6.26669 6.35408 6.37731 6.45681 6.61274 6.62223 6.72433 6.97157 7.14853 7.19725 7.30553 7.50921 7.75861 8.17390 8.76483 9.45006 10.89847 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.005130 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.485449 B = 5456.816369 C = 6526.011153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.134 4.134 3 C 0.160 3.840 4 H 0.094 0.906 5 N -1.130 6.130 6 S 2.620 3.380 7 O -0.977 6.977 8 O -0.939 6.939 9 C -0.562 4.562 10 C 0.043 3.957 11 C -0.537 4.537 12 H 0.067 0.933 13 C 0.097 3.903 14 N -0.868 5.868 15 Si 0.888 3.112 16 H -0.268 1.268 17 H -0.286 1.286 18 H -0.271 1.271 19 C -0.208 4.208 20 C -0.131 4.131 21 C -0.129 4.129 22 H 0.085 0.915 23 C -0.118 4.118 24 C -0.156 4.156 25 C 0.059 3.941 26 O -0.386 6.386 27 C 0.065 3.935 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.407 0.593 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.264 0.736 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.052 0.948 48 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.470 -12.145 2.572 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.173 4.173 3 C 0.052 3.948 4 H 0.112 0.888 5 N -0.885 5.885 6 S 2.717 3.283 7 O -0.968 6.968 8 O -0.928 6.928 9 C -0.694 4.694 10 C 0.041 3.959 11 C -0.574 4.574 12 H 0.085 0.915 13 C -0.110 4.110 14 N -0.503 5.503 15 Si 0.715 3.285 16 H -0.194 1.194 17 H -0.212 1.212 18 H -0.195 1.195 19 C -0.245 4.245 20 C -0.170 4.170 21 C -0.149 4.149 22 H 0.103 0.897 23 C -0.156 4.156 24 C -0.194 4.194 25 C -0.018 4.018 26 O -0.304 6.304 27 C -0.012 4.012 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.239 0.761 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.091 0.909 45 H 0.067 0.933 46 H 0.107 0.893 47 H 0.070 0.930 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.802 -11.365 2.524 14.595 hybrid contribution -0.123 0.356 -0.285 0.473 sum 8.679 -11.008 2.239 14.196 Atomic orbital electron populations 1.21953 0.95376 1.01859 1.02739 1.21957 0.96678 0.96102 1.02594 1.20739 0.93604 0.93808 0.86674 0.88789 1.56240 1.73846 1.45607 1.12841 1.04758 0.76463 0.72378 0.74746 1.93489 1.86873 1.82162 1.34273 1.93545 1.66044 1.62886 1.70355 1.30124 1.19788 1.07047 1.12443 1.18206 0.86213 0.91177 1.00337 1.20579 1.40586 1.02657 0.93600 0.91499 1.24876 0.93192 0.97124 0.95812 1.70010 1.41071 1.40481 0.98706 0.86625 0.81022 0.83068 0.77827 1.19359 1.21213 1.19521 1.23160 1.07274 1.00671 0.93413 1.22461 1.01227 1.00280 0.93036 1.22130 0.95183 0.97727 0.99905 0.89653 1.21675 0.93882 0.95288 1.04736 1.22206 0.97207 1.00752 0.99192 1.22588 0.98289 0.83444 0.97444 1.87886 1.20575 1.27268 1.94714 1.22670 0.80607 1.00756 0.97147 0.92216 0.92044 0.92617 0.90810 0.91323 0.76061 0.86048 0.88155 0.92671 0.91495 0.89816 0.89021 0.91895 0.90219 0.90818 0.91413 0.90893 0.93281 0.89298 0.93018 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.20 37.16 0.34 -1.37 16 2 C -0.13 -1.30 5.14 -26.73 -0.14 -1.43 16 3 C 0.16 1.96 1.87 -67.93 -0.13 1.84 16 4 H 0.09 1.28 7.53 -51.93 -0.39 0.89 16 5 N -1.13 -15.77 3.53 -4.89 -0.02 -15.79 16 6 S 2.62 51.82 4.40 -107.50 -0.47 51.34 16 7 O -0.98 -22.03 18.08 -57.54 -1.04 -23.07 16 8 O -0.94 -21.41 14.78 -57.54 -0.85 -22.26 16 9 C -0.56 -11.15 5.18 37.16 0.19 -10.95 16 10 C 0.04 1.02 1.85 -155.66 -0.29 0.73 16 11 C -0.54 -14.53 6.86 -34.44 -0.24 -14.77 16 12 H 0.07 1.88 7.82 -52.49 -0.41 1.47 16 13 C 0.10 2.63 5.42 -17.82 -0.10 2.53 16 14 N -0.87 -23.61 12.20 55.43 0.68 -22.93 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 17 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 C -0.21 -4.52 9.88 -26.73 -0.26 -4.78 16 20 C -0.13 -2.98 8.95 -26.73 -0.24 -3.22 16 21 C -0.13 -1.54 2.27 -90.48 -0.21 -1.74 16 22 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 23 C -0.12 -1.68 4.19 -26.55 -0.11 -1.79 16 24 C -0.16 -1.86 6.14 -26.59 -0.16 -2.03 16 25 C 0.06 0.66 6.84 37.21 0.25 0.92 16 26 O -0.39 -4.80 10.77 -35.23 -0.38 -5.18 16 27 C 0.06 0.72 5.54 37.21 0.21 0.93 16 28 H 0.06 0.67 5.78 -51.93 -0.30 0.37 16 29 H 0.06 0.69 8.08 -51.93 -0.42 0.28 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.57 6.75 -51.93 -0.35 0.22 16 33 H 0.41 4.82 7.79 -34.47 -0.27 4.55 16 34 H 0.12 2.36 7.83 -51.92 -0.41 1.96 16 35 H 0.10 1.67 6.40 -51.92 -0.33 1.34 16 36 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 37 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 38 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 39 H 0.09 2.25 7.87 -51.93 -0.41 1.85 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 42 H 0.07 1.18 6.43 -51.92 -0.33 0.84 16 43 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.05 0.57 6.87 -51.93 -0.36 0.21 16 48 H 0.09 0.86 6.68 -51.93 -0.35 0.51 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -31.96 377.51 -10.39 -42.36 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -8.10 Total: 8.27 kcal Atomic # 6 Polarization: -34.28 SS G_CDS: -0.87 Total: -35.15 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.66 Total: -38.72 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -2.27 Total: -50.51 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.47 Total: 51.34 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.96 -10.39 -42.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882760549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.288 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds