Wall clock time and date at job start Tue Mar 31 2020 15:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46792 * 2 1 4 4 H 1.08999 * 109.47690 * 304.48790 * 3 2 1 5 5 N 1.46498 * 109.46844 * 64.48845 * 3 2 1 6 6 S 1.65603 * 120.00042 * 234.05694 * 5 3 2 7 7 O 1.42099 * 104.28140 * 178.87667 * 6 5 3 8 8 O 1.42108 * 104.27637 * 306.73676 * 6 5 3 9 9 C 1.81398 * 104.44929 * 62.80266 * 6 5 3 10 10 C 1.53000 * 109.47392 * 174.13132 * 9 6 5 11 11 C 1.50700 * 115.54711 * 38.45321 * 10 9 6 12 12 H 1.07998 * 120.00037 * 270.69137 * 11 10 9 13 13 C 1.37880 * 119.99911 * 90.68950 * 11 10 9 14 14 N 1.31516 * 119.99902 * 3.71176 * 13 11 10 15 15 Si 1.86799 * 119.99783 * 183.70774 * 13 11 10 16 16 H 1.48503 * 109.46810 * 90.00574 * 15 13 11 17 17 H 1.48505 * 109.46907 * 210.00057 * 15 13 11 18 18 H 1.48495 * 109.47468 * 330.00145 * 15 13 11 19 19 C 1.52999 * 117.49974 * 252.74256 * 10 9 6 20 20 C 1.52998 * 60.00083 * 252.51011 * 19 10 9 21 21 C 1.53004 * 109.46978 * 184.48643 * 3 2 1 22 22 H 1.08993 * 109.57038 * 59.84655 * 21 3 2 23 23 C 1.53176 * 109.52120 * 180.02562 * 21 3 2 24 24 C 1.53173 * 109.11092 * 176.83884 * 23 21 3 25 25 C 1.53100 * 109.15930 * 303.15864 * 24 23 21 26 26 O 1.42895 * 109.48971 * 57.46701 * 25 24 23 27 27 C 1.42899 * 114.10170 * 298.89206 * 26 25 24 28 28 H 1.09005 * 109.47300 * 302.84743 * 1 2 3 29 29 H 1.08994 * 109.47475 * 62.85363 * 1 2 3 30 30 H 1.09001 * 109.46940 * 182.85502 * 1 2 3 31 31 H 1.08997 * 109.46818 * 240.00898 * 2 1 3 32 32 H 1.08991 * 109.47673 * 120.00334 * 2 1 3 33 33 H 0.96997 * 120.00292 * 54.06123 * 5 3 2 34 34 H 1.09002 * 109.47558 * 294.13791 * 9 6 5 35 35 H 1.09009 * 109.47360 * 54.13113 * 9 6 5 36 36 H 0.97006 * 119.99494 * 185.00652 * 14 13 11 37 37 H 1.09000 * 117.50076 * 0.02562 * 19 10 9 38 38 H 1.09005 * 117.49557 * 145.02147 * 19 10 9 39 39 H 1.09001 * 117.49854 * 252.50779 * 20 19 10 40 40 H 1.09002 * 117.49437 * 107.49349 * 20 19 10 41 41 H 1.09004 * 109.54338 * 296.75501 * 23 21 3 42 42 H 1.09009 * 109.54243 * 56.93086 * 23 21 3 43 43 H 1.09011 * 109.52024 * 62.97193 * 24 23 21 44 44 H 1.08999 * 109.52702 * 183.15659 * 24 23 21 45 45 H 1.09000 * 109.40291 * 297.48806 * 25 24 23 46 46 H 1.09005 * 109.49355 * 177.50872 * 25 24 23 47 47 H 1.09002 * 109.47881 * 301.17630 * 27 26 25 48 48 H 1.09000 * 109.48375 * 181.13570 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6124 1.9791 -0.8470 5 7 1.6418 2.1012 1.2466 6 16 0.8072 3.5307 1.1978 7 8 0.5758 3.8482 2.5634 8 8 1.6024 4.3728 0.3744 9 6 -0.7515 3.1167 0.3675 10 6 -1.6801 4.3325 0.3902 11 6 -1.0093 5.6665 0.1857 12 1 -0.6336 6.2178 1.0350 13 6 -0.8753 6.1830 -1.0856 14 7 -1.3968 5.5473 -2.1120 15 14 0.0471 7.7858 -1.3500 16 1 1.4847 7.4966 -1.5844 17 1 -0.5147 8.4912 -2.5299 18 1 -0.0956 8.6434 -0.1462 19 6 -2.8847 4.2840 1.3321 20 6 -3.0894 4.1559 -0.1787 21 6 3.5658 1.4441 -0.1128 22 1 3.8639 0.9519 -1.0385 23 6 4.0776 2.8878 -0.1123 24 6 5.6090 2.8770 -0.1458 25 6 6.1320 2.0726 1.0473 26 8 5.5937 0.7497 1.0032 27 6 4.1678 0.6970 1.0802 28 1 -0.3634 0.5574 0.8634 29 1 -0.3634 0.4689 -0.9144 30 1 -0.3633 -1.0264 0.0512 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8898 33 1 1.8670 1.7000 2.1005 34 1 -0.5490 2.8334 -0.6654 35 1 -1.2294 2.2850 0.8853 36 1 -1.2410 5.8711 -3.0131 37 1 -3.0156 3.3861 1.9360 38 1 -3.1923 5.2171 1.8043 39 1 -3.5316 5.0046 -0.7004 40 1 -3.3551 3.1734 -0.5690 41 1 3.6973 3.4098 -0.9904 42 1 3.7363 3.3954 0.7900 43 1 5.9498 2.4149 -1.0725 44 1 5.9819 3.8996 -0.0891 45 1 5.8262 2.5588 1.9737 46 1 7.2201 2.0240 1.0043 47 1 3.8363 1.1652 2.0071 48 1 3.8408 -0.3426 1.0606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882760549.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:25 Heat of formation + Delta-G solvation = -136.072505 kcal Electronic energy + Delta-G solvation = -29211.416121 eV Core-core repulsion = 25392.669092 eV Total energy + Delta-G solvation = -3818.747029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.71677 -38.54733 -38.07320 -37.68524 -36.63081 -34.18668 -34.07640 -32.54862 -31.84660 -29.87984 -27.56567 -26.92314 -25.99698 -23.81140 -22.91986 -21.87901 -21.47162 -20.92290 -20.18355 -18.57365 -18.19395 -17.45163 -17.02337 -16.85500 -16.65717 -16.60260 -16.09466 -15.65911 -15.60899 -15.27106 -15.12352 -14.79999 -14.48695 -14.08866 -13.99242 -13.72574 -13.58303 -13.37710 -13.04367 -12.95764 -12.94157 -12.77650 -12.62332 -12.60138 -12.45333 -12.26114 -12.11329 -11.97255 -11.91194 -11.79995 -11.67807 -11.56760 -11.46174 -11.10399 -10.98201 -10.48344 -10.39327 -10.23856 -9.86606 -8.23760 -6.41752 -0.40465 1.33175 1.40256 1.44253 2.17873 2.37935 2.96940 3.04059 3.08362 3.36032 3.60371 3.61724 3.81749 3.89756 4.00861 4.04347 4.17248 4.22619 4.31470 4.35587 4.40242 4.46343 4.57678 4.57903 4.61369 4.70430 4.77445 4.81955 4.86450 4.87862 4.97156 5.00237 5.02187 5.09563 5.18167 5.20171 5.22928 5.27880 5.41971 5.44102 5.50520 5.52617 5.65292 5.68874 6.19858 6.22885 6.27323 6.67553 7.35737 8.82114 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013619 B = 0.005130 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.485449 B = 5456.816369 C = 6526.011153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.127 4.127 3 C 0.155 3.845 4 H 0.077 0.923 5 N -1.110 6.110 6 S 2.630 3.370 7 O -1.010 7.010 8 O -0.978 6.978 9 C -0.554 4.554 10 C 0.009 3.991 11 C -0.549 4.549 12 H 0.043 0.957 13 C 0.062 3.938 14 N -0.882 5.882 15 Si 0.920 3.080 16 H -0.276 1.276 17 H -0.271 1.271 18 H -0.271 1.271 19 C -0.196 4.196 20 C -0.128 4.128 21 C -0.123 4.123 22 H 0.100 0.900 23 C -0.124 4.124 24 C -0.153 4.153 25 C 0.058 3.942 26 O -0.394 6.394 27 C 0.064 3.936 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.420 0.580 34 H 0.123 0.877 35 H 0.135 0.865 36 H 0.266 0.734 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.046 0.954 46 H 0.110 0.890 47 H 0.050 0.950 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.961 -14.857 2.820 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.166 4.166 3 C 0.047 3.953 4 H 0.095 0.905 5 N -0.870 5.870 6 S 2.727 3.273 7 O -1.001 7.001 8 O -0.967 6.967 9 C -0.687 4.687 10 C 0.007 3.993 11 C -0.587 4.587 12 H 0.062 0.938 13 C -0.143 4.143 14 N -0.518 5.518 15 Si 0.746 3.254 16 H -0.202 1.202 17 H -0.196 1.196 18 H -0.196 1.196 19 C -0.233 4.233 20 C -0.167 4.167 21 C -0.144 4.144 22 H 0.118 0.882 23 C -0.162 4.162 24 C -0.191 4.191 25 C -0.018 4.018 26 O -0.313 6.313 27 C -0.013 4.013 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.256 0.744 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.064 0.936 46 H 0.128 0.872 47 H 0.068 0.932 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 9.287 -14.064 2.783 17.082 hybrid contribution -0.264 1.194 -0.349 1.271 sum 9.023 -12.870 2.434 15.906 Atomic orbital electron populations 1.22009 0.95970 1.02824 1.01750 1.21946 0.96108 0.93901 1.04608 1.20957 0.94006 0.95310 0.84987 0.90524 1.55649 1.72813 1.44146 1.14402 1.04113 0.76509 0.73148 0.73546 1.93435 1.87387 1.83463 1.35766 1.93500 1.67000 1.65220 1.71006 1.29984 1.19159 1.06432 1.13081 1.18368 0.87295 0.91250 1.02384 1.20699 1.40804 1.04296 0.92911 0.93836 1.25333 0.93938 0.99032 0.95949 1.70033 1.41676 1.41285 0.98786 0.86127 0.79836 0.81268 0.78194 1.20217 1.19560 1.19613 1.23232 1.05161 1.01789 0.93157 1.22366 1.00231 1.00394 0.93702 1.22107 0.94697 0.96270 1.01281 0.88219 1.21664 0.95657 0.96599 1.02273 1.22194 0.95508 1.01197 1.00216 1.22673 0.99511 0.82967 0.96688 1.87878 1.21153 1.27616 1.94652 1.22799 0.80104 1.02067 0.96317 0.93027 0.93206 0.90732 0.88839 0.89174 0.74414 0.85900 0.84677 0.92478 0.88227 0.90641 0.91613 0.89647 0.92877 0.93174 0.90531 0.90943 0.93599 0.87158 0.93212 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 9.20 71.98 0.66 -2.38 16 2 C -0.13 -2.01 5.14 30.60 0.16 -1.85 16 3 C 0.15 3.55 1.87 44.99 0.08 3.64 16 4 H 0.08 2.06 7.53 -2.39 -0.02 2.04 16 5 N -1.11 -29.77 3.53 -169.38 -0.60 -30.36 16 6 S 2.63 104.64 4.40 -56.49 -0.25 104.39 16 7 O -1.01 -45.84 18.08 -127.65 -2.31 -48.15 16 8 O -0.98 -46.23 14.78 -127.65 -1.89 -48.11 16 9 C -0.55 -21.50 5.18 71.98 0.37 -21.12 16 10 C 0.01 0.42 1.85 -52.93 -0.10 0.33 16 11 C -0.55 -30.43 6.86 25.60 0.18 -30.25 16 12 H 0.04 2.55 7.82 -2.91 -0.02 2.52 16 13 C 0.06 3.44 5.42 84.66 0.46 3.90 16 14 N -0.88 -48.52 12.20 21.45 0.26 -48.26 16 15 Si 0.92 45.21 29.54 68.60 2.03 47.24 16 16 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 19 C -0.20 -8.29 9.88 30.59 0.30 -7.99 16 20 C -0.13 -5.73 8.95 30.59 0.27 -5.45 16 21 C -0.12 -2.73 2.27 -10.70 -0.02 -2.76 16 22 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 23 C -0.12 -3.56 4.19 30.71 0.13 -3.43 16 24 C -0.15 -3.57 6.14 30.69 0.19 -3.38 16 25 C 0.06 1.21 6.84 72.02 0.49 1.70 16 26 O -0.39 -8.79 10.77 -148.98 -1.60 -10.39 16 27 C 0.06 1.23 5.54 72.01 0.40 1.63 16 28 H 0.05 1.00 5.78 -2.38 -0.01 0.98 16 29 H 0.05 1.01 8.08 -2.39 -0.02 0.99 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.09 1.08 6.75 -2.39 -0.02 1.06 16 33 H 0.42 9.21 7.79 -96.75 -0.75 8.46 16 34 H 0.12 4.72 7.83 -2.39 -0.02 4.70 16 35 H 0.14 4.18 6.40 -2.39 -0.02 4.16 16 36 H 0.27 13.95 8.32 -92.70 -0.77 13.17 16 37 H 0.10 3.52 8.07 -2.39 -0.02 3.50 16 38 H 0.07 3.27 8.14 -2.38 -0.02 3.25 16 39 H 0.07 3.26 7.87 -2.39 -0.02 3.24 16 40 H 0.09 3.37 8.14 -2.39 -0.02 3.36 16 41 H 0.05 1.76 8.09 -2.39 -0.02 1.74 16 42 H 0.05 1.65 6.43 -2.38 -0.02 1.64 16 43 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 45 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 47 H 0.05 0.98 6.87 -2.39 -0.02 0.97 16 48 H 0.12 1.69 6.68 -2.39 -0.02 1.67 16 Total: -1.00 -70.31 377.51 -0.59 -70.90 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.19 Total: 30.15 kcal Atomic # 6 Polarization: -70.98 SS G_CDS: 3.57 Total: -67.41 kcal Atomic # 7 Polarization: -78.29 SS G_CDS: -0.34 Total: -78.62 kcal Atomic # 8 Polarization: -100.85 SS G_CDS: -5.80 Total: -106.65 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 16 Polarization: 104.64 SS G_CDS: -0.25 Total: 104.39 kcal Total: -70.31 -0.59 -70.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882760549.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.171 kcal (2) G-P(sol) polarization free energy of solvation -70.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds