Wall clock time and date at job start Tue Mar 31 2020 17:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00088 * 2 1 4 4 O 1.20827 * 120.00236 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00225 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.45079 * 59.96904 * 5 3 2 7 7 C 1.53039 * 109.46025 * 300.00076 * 5 3 2 8 8 C 1.53185 * 109.31365 * 178.61293 * 7 5 3 9 9 N 1.46921 * 108.77610 * 54.63753 * 8 7 5 10 10 C 1.34780 * 120.63182 * 126.41512 * 9 8 7 11 11 O 1.21589 * 120.00094 * 185.88561 * 10 9 8 12 12 C 1.47640 * 119.99856 * 5.87968 * 10 9 8 13 13 C 1.40014 * 119.89792 * 29.26792 * 12 10 9 14 14 C 1.36318 * 120.10728 * 179.71288 * 13 12 10 15 15 C 1.40882 * 119.89031 * 0.58269 * 14 13 12 16 16 C 1.41107 * 120.09870 * 179.67477 * 15 14 13 17 17 H 1.08007 * 119.99406 * 209.37109 * 16 15 14 18 18 C 1.40225 * 120.00317 * 29.37577 * 16 15 14 19 19 N 1.30636 * 120.00000 * 11.26671 * 18 16 15 20 20 Si 1.86805 * 119.99934 * 191.26438 * 18 16 15 21 21 H 1.48498 * 109.47134 * 89.99856 * 20 18 16 22 22 H 1.48501 * 109.46986 * 210.00035 * 20 18 16 23 23 H 1.48498 * 109.47074 * 330.00078 * 20 18 16 24 24 C 1.40886 * 119.79506 * 359.68715 * 15 14 13 25 25 C 1.36315 * 119.89167 * 0.02562 * 24 15 14 26 26 C 1.46920 * 118.73924 * 306.38770 * 9 8 7 27 27 H 1.08996 * 109.70726 * 293.75473 * 26 9 8 28 28 C 1.53003 * 109.59025 * 173.39560 * 26 9 8 29 29 C 1.53043 * 109.46358 * 179.97438 * 5 3 2 30 30 H 1.08999 * 109.47219 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46835 * 299.99640 * 1 2 3 32 32 H 1.09003 * 109.47223 * 59.99990 * 1 2 3 33 33 H 1.08996 * 109.49913 * 298.56629 * 7 5 3 34 34 H 1.09001 * 109.49826 * 58.66087 * 7 5 3 35 35 H 1.09005 * 109.58763 * 174.42589 * 8 7 5 36 36 H 1.09001 * 109.58623 * 294.84567 * 8 7 5 37 37 H 1.08003 * 119.94131 * 0.02562 * 13 12 10 38 38 H 1.08002 * 120.04982 * 180.29912 * 14 13 12 39 39 H 0.97006 * 119.99812 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.05220 * 180.02562 * 24 15 14 41 41 H 1.08002 * 119.94769 * 179.97438 * 25 24 15 42 42 H 1.09000 * 109.46924 * 303.30832 * 28 26 9 43 43 H 1.08996 * 109.47031 * 63.30137 * 28 26 9 44 44 H 1.08998 * 109.47357 * 183.31063 * 28 26 9 45 45 H 1.09007 * 109.49614 * 301.33980 * 29 5 3 46 46 H 1.08997 * 109.49534 * 61.42986 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9554 0.7803 -0.8906 7 6 4.1138 0.5807 1.2487 8 6 5.6446 0.6326 1.2273 9 7 6.0684 2.0316 1.0798 10 6 6.9354 2.5822 1.9525 11 8 7.1961 3.7678 1.8844 12 6 7.5684 1.7456 2.9914 13 6 7.7917 0.3845 2.7511 14 6 8.3811 -0.3906 3.7051 15 6 8.7547 0.1774 4.9390 16 6 9.3590 -0.6224 5.9322 17 1 9.2239 -0.3806 6.9761 18 6 10.1347 -1.7309 5.5638 19 7 10.4819 -1.8994 4.3157 20 14 10.6718 -2.9665 6.8577 21 1 9.6479 -4.0355 6.9764 22 1 11.9705 -3.5669 6.4600 23 1 10.8239 -2.2794 8.1654 24 6 8.5229 1.5463 5.1783 25 6 7.9382 2.3147 4.2161 26 6 5.5296 2.8188 -0.0376 27 1 5.8938 2.4139 -0.9818 28 6 5.9738 4.2764 0.1006 29 6 4.0000 2.7425 -0.0011 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 3.7449 1.0900 2.1390 34 1 3.7851 -0.4585 1.2611 35 1 6.0370 0.2284 2.1605 36 1 6.0183 0.0469 0.3874 37 1 7.5009 -0.0510 1.8065 38 1 8.5573 -1.4394 3.5169 39 1 11.0189 -2.6661 4.0610 40 1 8.8080 1.9862 6.1226 41 1 7.7597 3.3641 4.3987 42 1 5.6525 4.6639 1.0674 43 1 7.0599 4.3336 0.0290 44 1 5.5253 4.8700 -0.6959 45 1 3.5903 3.2426 -0.8787 46 1 3.6322 3.2308 0.9013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886366697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:21 Heat of formation + Delta-G solvation = -82.939647 kcal Electronic energy + Delta-G solvation = -28654.642044 eV Core-core repulsion = 24702.755078 eV Total energy + Delta-G solvation = -3951.886967 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.96739 -39.95973 -37.65218 -36.95638 -36.40344 -34.05076 -32.98112 -32.70843 -29.91432 -29.56721 -28.29630 -27.52423 -25.82486 -25.08757 -22.76634 -22.48803 -21.08625 -20.77036 -20.27369 -18.78628 -17.70779 -17.50737 -16.81089 -16.66722 -16.14590 -15.75684 -15.44218 -14.94780 -14.48305 -14.31234 -13.98024 -13.96132 -13.75581 -13.37040 -12.99808 -12.85458 -12.55830 -12.52455 -12.34746 -12.12052 -11.95049 -11.86885 -11.70903 -11.60449 -11.34870 -11.28110 -11.06797 -11.01831 -10.94851 -10.79332 -10.67240 -10.57827 -10.32152 -9.94202 -9.47171 -9.42830 -8.39937 -8.22306 -7.67858 -7.49242 -6.96801 -4.61213 2.02164 2.23667 2.50685 2.93100 2.95465 2.96882 2.99487 3.42037 3.74925 3.78877 4.39530 4.50884 4.60784 4.62177 4.85210 4.92659 4.99213 5.03019 5.23708 5.26209 5.31954 5.47009 5.51716 5.57698 5.61946 5.75358 5.93325 5.95116 6.00427 6.02907 6.11318 6.15640 6.20018 6.26948 6.43607 6.66825 6.75554 6.85310 6.98399 7.07306 7.12198 7.43230 7.55892 7.58391 7.77569 7.84737 8.04165 8.09003 8.40357 8.64441 8.73781 8.99109 9.95631 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.003019 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.371019 B = 9271.352141 C =10618.702597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.466 3.534 4 O -0.508 6.508 5 C -0.079 4.079 6 H 0.110 0.890 7 C -0.127 4.127 8 C 0.090 3.910 9 N -0.617 5.617 10 C 0.576 3.424 11 O -0.558 6.558 12 C -0.276 4.276 13 C -0.081 4.081 14 C -0.170 4.170 15 C 0.128 3.872 16 C -0.449 4.449 17 H 0.083 0.917 18 C 0.073 3.927 19 N -0.782 5.782 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.260 1.260 24 C -0.232 4.232 25 C -0.028 4.028 26 C 0.147 3.853 27 H 0.066 0.934 28 C -0.131 4.131 29 C -0.114 4.114 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.128 0.872 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.285 0.715 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.035 0.965 45 H 0.079 0.921 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.672 -1.581 -8.654 15.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.274 6.274 3 C 0.309 3.691 4 O -0.395 6.395 5 C -0.098 4.098 6 H 0.128 0.872 7 C -0.165 4.165 8 C -0.032 4.032 9 N -0.351 5.351 10 C 0.372 3.628 11 O -0.440 6.440 12 C -0.280 4.280 13 C -0.100 4.100 14 C -0.189 4.189 15 C 0.125 3.875 16 C -0.477 4.477 17 H 0.101 0.899 18 C -0.147 4.147 19 N -0.406 5.406 20 Si 0.739 3.261 21 H -0.191 1.191 22 H -0.201 1.201 23 H -0.184 1.184 24 C -0.252 4.252 25 C -0.048 4.048 26 C 0.044 3.956 27 H 0.084 0.916 28 C -0.188 4.188 29 C -0.153 4.153 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.146 0.854 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.096 0.904 40 H 0.116 0.884 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.097 0.903 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -12.614 -0.814 -8.845 15.428 hybrid contribution -0.021 -0.690 0.358 0.778 sum -12.635 -1.504 -8.488 15.295 Atomic orbital electron populations 1.23259 0.76543 1.03655 1.02463 1.86523 1.23269 1.33581 1.84038 1.23941 0.92137 0.81208 0.71815 1.90661 1.67234 1.36415 1.45175 1.21159 0.86507 0.99819 1.02318 0.87238 1.22013 0.97093 1.01379 0.96056 1.22506 0.92600 0.82978 1.05139 1.48003 1.46157 1.12212 1.28772 1.18673 0.77126 0.86965 0.80061 1.90701 1.64229 1.16298 1.72725 1.18950 1.17743 0.94431 0.96877 1.20861 0.98203 0.92600 0.98306 1.21045 1.02634 0.99971 0.95249 1.17793 0.86710 0.90651 0.92339 1.19798 1.25286 1.07680 0.94935 0.89928 1.26039 0.94531 0.97803 0.96280 1.69707 1.26364 1.26551 1.18020 0.86191 0.78561 0.80154 0.81212 1.19051 1.20075 1.18423 1.20763 1.10418 0.94214 0.99794 1.20309 0.94667 0.97542 0.92233 1.21149 0.91441 0.93633 0.89375 0.91567 1.22171 1.02681 0.92604 1.01387 1.21964 0.96022 0.93148 1.04117 0.88091 0.91912 0.92040 0.90788 0.89406 0.85433 0.91564 0.87677 0.86056 0.90390 0.88412 0.88489 0.90871 0.90648 0.94672 0.90276 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.81 10.44 -39.23 -0.41 -4.22 16 3 C 0.47 5.62 7.25 36.01 0.26 5.88 16 4 O -0.51 -7.42 15.73 -18.75 -0.29 -7.71 16 5 C -0.08 -0.86 2.59 -91.73 -0.24 -1.10 16 6 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 7 C -0.13 -1.46 5.30 -26.62 -0.14 -1.60 16 8 C 0.09 1.22 4.68 -3.72 -0.02 1.20 16 9 N -0.62 -9.90 2.97 -166.41 -0.49 -10.39 16 10 C 0.58 11.61 7.36 -12.42 -0.09 11.52 16 11 O -0.56 -12.32 12.08 5.29 0.06 -12.26 16 12 C -0.28 -5.98 5.49 -104.73 -0.58 -6.56 16 13 C -0.08 -1.70 7.32 -39.61 -0.29 -1.99 16 14 C -0.17 -3.98 8.59 -39.27 -0.34 -4.32 16 15 C 0.13 3.17 5.54 -106.81 -0.59 2.58 16 16 C -0.45 -10.97 9.05 -37.75 -0.34 -11.31 16 17 H 0.08 1.94 7.88 -52.48 -0.41 1.53 16 18 C 0.07 1.69 5.24 -17.31 -0.09 1.60 16 19 N -0.78 -18.60 10.89 55.56 0.61 -17.99 16 20 Si 0.91 17.20 29.58 -169.99 -5.03 12.18 16 21 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 23 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 24 C -0.23 -5.47 9.73 -39.27 -0.38 -5.85 16 25 C -0.03 -0.64 9.52 -39.61 -0.38 -1.02 16 26 C 0.15 2.03 3.49 -67.60 -0.24 1.80 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 C -0.13 -2.00 7.59 37.16 0.28 -1.71 16 29 C -0.11 -1.40 3.94 -26.61 -0.10 -1.51 16 30 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.86 8.08 -51.93 -0.42 0.44 16 35 H 0.13 1.97 4.09 -51.93 -0.21 1.75 16 36 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 37 H 0.11 1.89 5.34 -52.48 -0.28 1.61 16 38 H 0.12 2.90 6.27 -52.49 -0.33 2.57 16 39 H 0.28 6.13 8.29 -40.82 -0.34 5.79 16 40 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.10 2.12 7.90 -52.49 -0.41 1.70 16 42 H 0.07 1.27 6.78 -51.93 -0.35 0.92 16 43 H 0.07 1.30 6.71 -51.93 -0.35 0.95 16 44 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 46 H 0.08 1.10 8.13 -51.93 -0.42 0.67 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -28.62 366.85 -8.78 -37.40 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -6.54 Total: 8.53 kcal Atomic # 6 Polarization: -8.86 SS G_CDS: -2.21 Total: -11.07 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: 0.11 Total: -28.38 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -0.64 Total: -24.19 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.62 -8.78 -37.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886366697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.539 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds