Wall clock time and date at job start Tue Mar 31 2020 17:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34221 * 117.00088 * 2 1 4 4 O 1.20827 * 120.00236 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00225 * 180.02562 * 3 2 1 6 6 H 1.08997 * 109.45079 * 59.96904 * 5 3 2 7 7 C 1.53039 * 109.46025 * 300.00076 * 5 3 2 8 8 C 1.53185 * 109.31365 * 178.61293 * 7 5 3 9 9 N 1.46921 * 108.77610 * 54.63753 * 8 7 5 10 10 C 1.34780 * 120.63182 * 126.41512 * 9 8 7 11 11 O 1.21589 * 120.00094 * 185.88561 * 10 9 8 12 12 C 1.47640 * 119.99856 * 5.87968 * 10 9 8 13 13 C 1.40014 * 119.89792 * 29.26792 * 12 10 9 14 14 C 1.36318 * 120.10728 * 179.71288 * 13 12 10 15 15 C 1.40882 * 119.89031 * 0.58269 * 14 13 12 16 16 C 1.41107 * 120.09870 * 179.67477 * 15 14 13 17 17 H 1.08007 * 119.99406 * 209.37109 * 16 15 14 18 18 C 1.40225 * 120.00317 * 29.37577 * 16 15 14 19 19 N 1.30636 * 120.00000 * 11.26671 * 18 16 15 20 20 Si 1.86805 * 119.99934 * 191.26438 * 18 16 15 21 21 H 1.48498 * 109.47134 * 89.99856 * 20 18 16 22 22 H 1.48501 * 109.46986 * 210.00035 * 20 18 16 23 23 H 1.48498 * 109.47074 * 330.00078 * 20 18 16 24 24 C 1.40886 * 119.79506 * 359.68715 * 15 14 13 25 25 C 1.36315 * 119.89167 * 0.02562 * 24 15 14 26 26 C 1.46920 * 118.73924 * 306.38770 * 9 8 7 27 27 H 1.08996 * 109.70726 * 293.75473 * 26 9 8 28 28 C 1.53003 * 109.59025 * 173.39560 * 26 9 8 29 29 C 1.53043 * 109.46358 * 179.97438 * 5 3 2 30 30 H 1.08999 * 109.47219 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46835 * 299.99640 * 1 2 3 32 32 H 1.09003 * 109.47223 * 59.99990 * 1 2 3 33 33 H 1.08996 * 109.49913 * 298.56629 * 7 5 3 34 34 H 1.09001 * 109.49826 * 58.66087 * 7 5 3 35 35 H 1.09005 * 109.58763 * 174.42589 * 8 7 5 36 36 H 1.09001 * 109.58623 * 294.84567 * 8 7 5 37 37 H 1.08003 * 119.94131 * 0.02562 * 13 12 10 38 38 H 1.08002 * 120.04982 * 180.29912 * 14 13 12 39 39 H 0.97006 * 119.99812 * 179.97438 * 19 18 16 40 40 H 1.08004 * 120.05220 * 180.02562 * 24 15 14 41 41 H 1.08002 * 119.94769 * 179.97438 * 25 24 15 42 42 H 1.09000 * 109.46924 * 303.30832 * 28 26 9 43 43 H 1.08996 * 109.47031 * 63.30137 * 28 26 9 44 44 H 1.08998 * 109.47357 * 183.31063 * 28 26 9 45 45 H 1.09007 * 109.49614 * 301.33980 * 29 5 3 46 46 H 1.08997 * 109.49534 * 61.42986 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9554 0.7803 -0.8906 7 6 4.1138 0.5807 1.2487 8 6 5.6446 0.6326 1.2273 9 7 6.0684 2.0316 1.0798 10 6 6.9354 2.5822 1.9525 11 8 7.1961 3.7678 1.8844 12 6 7.5684 1.7456 2.9914 13 6 7.7917 0.3845 2.7511 14 6 8.3811 -0.3906 3.7051 15 6 8.7547 0.1774 4.9390 16 6 9.3590 -0.6224 5.9322 17 1 9.2239 -0.3806 6.9761 18 6 10.1347 -1.7309 5.5638 19 7 10.4819 -1.8994 4.3157 20 14 10.6718 -2.9665 6.8577 21 1 9.6479 -4.0355 6.9764 22 1 11.9705 -3.5669 6.4600 23 1 10.8239 -2.2794 8.1654 24 6 8.5229 1.5463 5.1783 25 6 7.9382 2.3147 4.2161 26 6 5.5296 2.8188 -0.0376 27 1 5.8938 2.4139 -0.9818 28 6 5.9738 4.2764 0.1006 29 6 4.0000 2.7425 -0.0011 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 3.7449 1.0900 2.1390 34 1 3.7851 -0.4585 1.2611 35 1 6.0370 0.2284 2.1605 36 1 6.0183 0.0469 0.3874 37 1 7.5009 -0.0510 1.8065 38 1 8.5573 -1.4394 3.5169 39 1 11.0189 -2.6661 4.0610 40 1 8.8080 1.9862 6.1226 41 1 7.7597 3.3641 4.3987 42 1 5.6525 4.6639 1.0674 43 1 7.0599 4.3336 0.0290 44 1 5.5253 4.8700 -0.6959 45 1 3.5903 3.2426 -0.8787 46 1 3.6322 3.2308 0.9013 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886366697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:20 Heat of formation + Delta-G solvation = -96.924239 kcal Electronic energy + Delta-G solvation = -28655.248462 eV Core-core repulsion = 24702.755078 eV Total energy + Delta-G solvation = -3952.493384 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.00878 -41.22855 -39.22993 -38.25436 -37.44811 -35.74012 -34.26416 -33.91322 -31.57572 -31.34315 -29.19736 -28.56067 -27.49912 -26.15759 -24.02571 -23.89861 -22.47756 -22.34651 -21.31198 -20.18741 -19.30979 -18.59018 -17.90504 -17.71173 -17.27139 -17.22364 -16.90553 -16.27444 -15.93830 -15.56804 -15.31782 -15.05075 -14.89660 -14.69350 -14.45314 -14.10898 -14.05284 -13.74175 -13.60140 -13.44026 -13.24283 -13.19437 -13.04971 -12.82784 -12.80942 -12.71506 -12.42978 -12.29086 -12.09842 -11.84945 -11.76820 -11.74275 -11.59884 -11.47789 -11.17834 -11.08655 -9.94545 -9.55625 -9.44190 -9.25869 -8.69254 -6.45035 0.52341 1.10365 1.15349 1.41912 1.45261 1.54720 1.70784 2.06988 2.19108 2.21342 2.78583 3.45862 3.62657 3.68306 3.72921 3.88427 4.03535 4.18380 4.26331 4.29870 4.31206 4.32742 4.44124 4.46414 4.50425 4.55068 4.72333 4.74947 4.77502 4.88532 4.93897 4.99859 5.01300 5.08709 5.10642 5.19479 5.26512 5.32914 5.36673 5.45069 5.64036 5.76907 5.87071 6.00569 6.03394 6.28188 6.57280 6.59748 6.68052 6.83795 6.93035 7.44895 8.25914 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014479 B = 0.003019 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.371019 B = 9271.352141 C =10618.702597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.539 6.539 5 C -0.074 4.074 6 H 0.143 0.857 7 C -0.118 4.118 8 C 0.085 3.915 9 N -0.610 5.610 10 C 0.571 3.429 11 O -0.585 6.585 12 C -0.280 4.280 13 C -0.065 4.065 14 C -0.187 4.187 15 C 0.102 3.898 16 C -0.483 4.483 17 H 0.080 0.920 18 C 0.038 3.962 19 N -0.810 5.810 20 Si 0.986 3.014 21 H -0.257 1.257 22 H -0.268 1.268 23 H -0.262 1.262 24 C -0.248 4.248 25 C -0.040 4.040 26 C 0.146 3.854 27 H 0.098 0.902 28 C -0.126 4.126 29 C -0.106 4.106 30 H 0.132 0.868 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.140 0.860 38 H 0.115 0.885 39 H 0.294 0.706 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.042 0.958 43 H 0.051 0.949 44 H 0.063 0.937 45 H 0.094 0.906 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.720 -3.590 -10.597 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.314 3.686 4 O -0.429 6.429 5 C -0.092 4.092 6 H 0.161 0.839 7 C -0.157 4.157 8 C -0.036 4.036 9 N -0.343 5.343 10 C 0.365 3.635 11 O -0.469 6.469 12 C -0.284 4.284 13 C -0.084 4.084 14 C -0.206 4.206 15 C 0.099 3.901 16 C -0.511 4.511 17 H 0.098 0.902 18 C -0.180 4.180 19 N -0.435 5.435 20 Si 0.807 3.193 21 H -0.181 1.181 22 H -0.192 1.192 23 H -0.186 1.186 24 C -0.268 4.268 25 C -0.060 4.060 26 C 0.044 3.956 27 H 0.116 0.884 28 C -0.183 4.183 29 C -0.144 4.144 30 H 0.150 0.850 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.157 0.843 38 H 0.133 0.867 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.697 -2.845 -10.815 17.683 hybrid contribution 0.180 0.014 0.864 0.882 sum -13.517 -2.831 -9.952 17.022 Atomic orbital electron populations 1.23542 0.75002 1.05699 1.02354 1.86507 1.24788 1.32621 1.83503 1.24066 0.92447 0.81157 0.70937 1.90658 1.67966 1.37498 1.46774 1.21147 0.86019 0.98815 1.03262 0.83907 1.21919 0.95389 1.02726 0.95633 1.22639 0.94049 0.81556 1.05366 1.48029 1.44623 1.13453 1.28188 1.18502 0.77992 0.86431 0.80550 1.90708 1.65409 1.17174 1.73569 1.19270 1.17068 0.95106 0.96950 1.21124 0.96292 0.91956 0.99009 1.21058 1.03884 0.99978 0.95686 1.18125 0.87450 0.91178 0.93381 1.20020 1.26865 1.09336 0.94867 0.90202 1.26817 0.93913 0.98882 0.98351 1.69737 1.26784 1.27365 1.19597 0.85126 0.78430 0.77564 0.78199 1.18148 1.19220 1.18554 1.20879 1.11260 0.94324 1.00320 1.20450 0.94979 0.97648 0.92884 1.21363 0.92355 0.92453 0.89470 0.88394 1.22007 1.01220 0.94281 1.00781 1.21838 0.94633 0.94393 1.03571 0.85015 0.92483 0.91779 0.92823 0.86957 0.87528 0.88202 0.84278 0.86688 0.89509 0.88205 0.88407 0.93848 0.93014 0.91833 0.88798 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.56 10.44 -51.33 -0.54 -7.10 16 3 C 0.47 10.14 7.25 71.24 0.52 10.66 16 4 O -0.54 -14.95 15.73 21.96 0.35 -14.60 16 5 C -0.07 -1.36 2.59 -11.51 -0.03 -1.39 16 6 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 7 C -0.12 -2.39 5.30 30.67 0.16 -2.23 16 8 C 0.09 2.05 4.68 86.36 0.40 2.46 16 9 N -0.61 -18.50 2.97 -798.65 -2.37 -20.88 16 10 C 0.57 22.97 7.36 86.73 0.64 23.60 16 11 O -0.59 -26.35 12.08 -3.99 -0.05 -26.39 16 12 C -0.28 -12.26 5.49 -19.93 -0.11 -12.37 16 13 C -0.07 -2.72 7.32 22.25 0.16 -2.55 16 14 C -0.19 -8.89 8.59 22.47 0.19 -8.69 16 15 C 0.10 5.19 5.54 -21.28 -0.12 5.08 16 16 C -0.48 -24.32 9.05 23.46 0.21 -24.11 16 17 H 0.08 3.90 7.88 -2.91 -0.02 3.87 16 18 C 0.04 1.74 5.24 85.35 0.45 2.19 16 19 N -0.81 -38.71 10.89 21.87 0.24 -38.47 16 20 Si 0.99 35.05 29.58 68.60 2.03 37.08 16 21 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 22 H -0.27 -9.09 7.11 99.48 0.71 -8.38 16 23 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 24 C -0.25 -12.20 9.73 22.47 0.22 -11.99 16 25 C -0.04 -1.90 9.52 22.25 0.21 -1.69 16 26 C 0.15 3.66 3.49 44.98 0.16 3.81 16 27 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 28 C -0.13 -3.72 7.59 71.98 0.55 -3.17 16 29 C -0.11 -2.36 3.94 30.67 0.12 -2.24 16 30 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.06 0.83 8.13 -2.39 -0.02 0.81 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 1.77 8.08 -2.39 -0.02 1.75 16 35 H 0.11 3.08 4.09 -2.38 -0.01 3.07 16 36 H 0.10 1.82 8.00 -2.39 -0.02 1.80 16 37 H 0.14 4.71 5.34 -2.91 -0.02 4.69 16 38 H 0.12 5.57 6.27 -2.91 -0.02 5.55 16 39 H 0.29 12.55 8.29 -92.70 -0.77 11.78 16 40 H 0.10 4.67 8.06 -2.91 -0.02 4.65 16 41 H 0.10 4.47 7.90 -2.91 -0.02 4.45 16 42 H 0.04 1.53 6.78 -2.39 -0.02 1.51 16 43 H 0.05 1.77 6.71 -2.39 -0.02 1.75 16 44 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.09 1.85 8.07 -2.38 -0.02 1.84 16 46 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 Total: -1.00 -64.87 366.85 5.58 -59.29 By element: Atomic # 1 Polarization: 31.15 SS G_CDS: 0.99 Total: 32.14 kcal Atomic # 6 Polarization: -26.00 SS G_CDS: 4.93 Total: -21.07 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -2.13 Total: -59.35 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -0.24 Total: -48.10 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Total: -64.87 5.58 -59.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886366697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.632 kcal (2) G-P(sol) polarization free energy of solvation -64.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds