Wall clock time and date at job start Tue Mar 31 2020 17:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.31492 * 2 1 4 4 C 1.54749 * 110.36033 * 122.21424 * 2 1 3 5 5 C 1.53463 * 103.63093 * 142.74189 * 4 2 1 6 6 C 1.52647 * 115.85314 * 129.05927 * 5 4 2 7 7 C 1.53984 * 86.73357 * 93.20997 * 6 5 4 8 8 N 1.46500 * 113.58089 * 139.18500 * 7 6 5 9 9 C 1.34773 * 120.00358 * 155.00152 * 8 7 6 10 10 O 1.21603 * 119.99810 * 0.02562 * 9 8 7 11 11 C 1.47534 * 120.00245 * 180.02562 * 9 8 7 12 12 C 1.39661 * 120.19430 * 359.97438 * 11 9 8 13 13 C 1.37830 * 119.91738 * 180.02562 * 12 11 9 14 14 C 1.38573 * 120.32471 * 359.97438 * 13 12 11 15 15 C 1.38028 * 120.40271 * 0.02562 * 14 13 12 16 16 C 1.38839 * 120.07000 * 0.29120 * 15 14 13 17 17 O 1.35520 * 120.16410 * 179.72485 * 16 15 14 18 18 C 1.34816 * 116.99583 * 354.40670 * 17 16 15 19 19 H 1.07999 * 120.00354 * 5.05952 * 18 17 16 20 20 C 1.38697 * 119.99654 * 185.06085 * 18 17 16 21 21 N 1.31518 * 120.00061 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99795 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47358 * 60.00090 * 22 20 18 24 24 H 1.48509 * 109.46971 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46919 * 299.99748 * 22 20 18 26 26 C 1.52656 * 115.82426 * 230.42046 * 5 4 2 27 27 C 1.53437 * 105.20676 * 359.70719 * 5 4 2 28 28 O 1.44515 * 110.45508 * 237.72348 * 2 1 3 29 29 H 1.08996 * 109.47818 * 297.78003 * 1 2 3 30 30 H 1.08998 * 109.47083 * 57.78857 * 1 2 3 31 31 H 1.09003 * 109.46875 * 177.77756 * 1 2 3 32 32 H 1.09002 * 110.59099 * 24.20583 * 4 2 1 33 33 H 1.08996 * 110.72458 * 261.34743 * 4 2 1 34 34 H 1.09010 * 113.66487 * 338.75073 * 6 5 4 35 35 H 1.08994 * 113.75635 * 207.68873 * 6 5 4 36 36 H 1.09002 * 113.58285 * 269.89962 * 7 6 5 37 37 H 0.97003 * 119.99760 * 335.00775 * 8 7 6 38 38 H 1.07991 * 120.04683 * 359.97438 * 12 11 9 39 39 H 1.08000 * 119.84350 * 180.02562 * 13 12 11 40 40 H 1.08001 * 119.80236 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.97022 * 180.02562 * 15 14 13 42 42 H 0.97005 * 119.99835 * 180.02562 * 21 20 18 43 43 H 1.08999 * 113.67297 * 152.30388 * 26 5 4 44 44 H 1.08999 * 113.66834 * 21.22062 * 26 5 4 45 45 H 1.08995 * 110.42744 * 95.54780 * 27 5 4 46 46 H 1.08999 * 110.42510 * 218.02874 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0223 0.0000 4 6 2.0684 -0.7734 1.2275 5 6 3.3071 -1.4979 0.6836 6 6 4.5903 -1.3202 1.4911 7 6 4.2031 -2.6168 2.2259 8 7 5.3372 -3.5101 2.4752 9 6 5.2907 -4.3896 3.4954 10 8 4.3073 -4.4419 4.2087 11 6 6.4330 -5.2888 3.7467 12 6 7.5643 -5.2325 2.9297 13 6 8.6280 -6.0757 3.1694 14 6 8.5815 -6.9799 4.2184 15 6 7.4701 -7.0468 5.0342 16 6 6.3866 -6.2099 4.8037 17 8 5.2921 -6.2778 5.6001 18 6 5.2691 -7.2572 6.5263 19 1 6.1325 -7.8914 6.6632 20 6 4.1366 -7.4502 7.3033 21 7 3.0854 -6.6776 7.1369 22 14 4.1049 -8.8068 8.5872 23 1 5.1853 -8.5749 9.5792 24 1 2.7903 -8.8039 9.2780 25 1 4.3139 -10.1196 7.9254 26 6 3.3848 -2.9940 0.9771 27 6 3.3874 -1.1019 -0.7966 28 8 2.0351 -0.7231 -1.1448 29 1 -0.3634 0.4789 0.9091 30 1 -0.3633 0.5478 -0.8695 31 1 -0.3633 -1.0269 -0.0399 32 1 1.3293 -1.4916 1.5825 33 1 2.3464 -0.0850 2.0255 34 1 4.5863 -0.4370 2.1301 35 1 5.4993 -1.4089 0.8962 36 1 3.5936 -2.4494 3.1139 37 1 6.1215 -3.4686 1.9060 38 1 7.6054 -4.5299 2.1106 39 1 9.5024 -6.0309 2.5371 40 1 9.4199 -7.6363 4.3988 41 1 7.4415 -7.7539 5.8500 42 1 2.2934 -6.8124 7.6806 43 1 3.9521 -3.5565 0.2357 44 1 2.4197 -3.4456 1.2064 45 1 4.0647 -0.2582 -0.9285 46 1 3.7123 -1.9495 -1.4001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888734933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:21 Heat of formation + Delta-G solvation = -59.481627 kcal Electronic energy + Delta-G solvation = -28098.054555 eV Core-core repulsion = 24147.184804 eV Total energy + Delta-G solvation = -3950.869750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.89159 -39.49222 -38.22053 -36.91671 -36.31242 -33.10062 -32.34069 -32.23496 -30.51110 -28.93604 -28.46873 -26.33531 -25.96008 -25.39635 -23.54330 -21.95309 -21.51713 -21.07469 -19.91548 -18.89570 -18.03098 -17.46560 -16.61832 -16.17735 -15.74419 -15.58328 -15.51469 -14.67126 -14.64326 -14.30738 -14.21706 -14.03744 -13.75965 -13.54998 -13.27991 -13.15744 -12.88694 -12.52876 -12.48731 -12.38372 -12.12205 -11.90354 -11.71896 -11.54980 -11.35495 -11.17714 -11.12633 -10.89158 -10.83701 -10.78773 -10.51417 -10.46969 -10.38122 -9.81162 -9.57667 -8.88183 -8.83084 -8.52121 -8.27522 -7.31522 -6.44815 -4.04817 1.71007 2.31379 3.11305 3.13394 3.15807 3.62830 3.69965 3.73169 3.93199 4.26734 4.33564 4.44166 4.60392 4.72388 4.86101 4.94672 4.99980 5.06693 5.10618 5.17559 5.32626 5.34566 5.41102 5.45602 5.52715 5.56411 5.60516 5.65865 5.69785 5.72138 5.78162 5.86899 5.97307 6.02198 6.04266 6.07799 6.11473 6.33821 6.55775 6.67770 6.69169 6.90386 7.00041 7.05657 7.23560 7.28728 7.68884 7.91711 8.13638 8.94703 9.10444 9.67046 10.68868 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.002909 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.741768 B = 9623.784148 C =11449.810697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.066 0.934 4 C -0.131 4.131 5 C -0.114 4.114 6 C -0.132 4.132 7 C 0.134 3.866 8 N -0.734 5.734 9 C 0.554 3.446 10 O -0.501 6.501 11 C -0.228 4.228 12 C -0.038 4.038 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.238 4.238 16 C 0.189 3.811 17 O -0.123 6.123 18 C -0.405 4.405 19 H 0.093 0.907 20 C 0.045 3.955 21 N -0.833 5.833 22 Si 0.940 3.060 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.136 4.136 27 C 0.063 3.937 28 O -0.375 6.375 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.392 0.608 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.131 0.869 42 H 0.272 0.728 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 10.765 -13.048 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.084 0.916 4 C -0.168 4.168 5 C -0.115 4.115 6 C -0.171 4.171 7 C 0.028 3.972 8 N -0.388 5.388 9 C 0.344 3.656 10 O -0.375 6.375 11 C -0.233 4.233 12 C -0.057 4.057 13 C -0.251 4.251 14 C -0.069 4.069 15 C -0.257 4.257 16 C 0.129 3.871 17 O -0.021 6.021 18 C -0.480 4.480 19 H 0.111 0.889 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.764 3.236 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.194 1.194 26 C -0.175 4.175 27 C -0.013 4.013 28 O -0.294 6.294 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.132 0.868 37 H 0.227 0.773 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.483 10.836 -12.533 16.634 hybrid contribution 0.713 -0.687 0.489 1.105 sum 2.196 10.149 -12.044 15.902 Atomic orbital electron populations 1.21813 0.93287 1.03115 1.02278 1.23029 0.95244 0.95201 0.85145 0.91575 1.22782 0.96515 0.99591 0.97951 1.22247 0.95943 0.97750 0.95512 1.23275 0.96803 0.98661 0.98334 1.22349 0.88732 0.88687 0.97409 1.45874 1.19637 1.39354 1.33894 1.18285 0.87378 0.79998 0.79926 1.90944 1.32720 1.67757 1.46093 1.18862 0.97286 1.05265 1.01856 1.20747 0.92114 0.96678 0.96162 1.20459 0.99787 1.02287 1.02526 1.20896 0.96396 0.96061 0.93594 1.21162 0.94953 1.05157 1.04474 1.19290 0.87674 0.91580 0.88552 1.84174 1.32894 1.46134 1.38907 1.21451 1.01953 1.10845 1.13780 0.88936 1.25378 0.94278 0.98325 0.98290 1.70119 1.03387 1.35654 1.37216 0.85803 0.78187 0.79906 0.79654 1.19375 1.20144 1.19363 1.23428 1.01622 0.93949 0.98475 1.23231 0.84584 0.99627 0.93892 1.89159 1.27693 1.74475 1.38086 0.91081 0.92069 0.91619 0.89817 0.90053 0.90538 0.89418 0.86837 0.77344 0.87100 0.87303 0.87200 0.85094 0.91818 0.89579 0.90651 0.92161 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.53 37.16 0.35 -0.89 16 2 C 0.07 0.68 3.94 -25.81 -0.10 0.58 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.13 -1.30 5.99 -25.57 -0.15 -1.45 16 5 C -0.11 -1.15 1.17 -154.42 -0.18 -1.33 16 6 C -0.13 -1.31 7.12 -26.40 -0.19 -1.50 16 7 C 0.13 1.86 4.11 -66.92 -0.28 1.59 16 8 N -0.73 -11.48 5.30 -53.86 -0.29 -11.77 16 9 C 0.55 12.04 7.76 -12.47 -0.10 11.94 16 10 O -0.50 -13.61 14.77 -16.58 -0.24 -13.85 16 11 C -0.23 -4.91 5.89 -104.81 -0.62 -5.53 16 12 C -0.04 -0.64 9.53 -39.20 -0.37 -1.02 16 13 C -0.23 -3.76 10.02 -39.61 -0.40 -4.16 16 14 C -0.05 -0.89 10.03 -39.53 -0.40 -1.29 16 15 C -0.24 -5.11 9.16 -39.44 -0.36 -5.47 16 16 C 0.19 4.68 6.66 -38.59 -0.26 4.42 16 17 O -0.12 -3.63 7.84 -21.06 -0.17 -3.79 16 18 C -0.40 -11.44 9.49 30.90 0.29 -11.15 16 19 H 0.09 2.37 5.21 -52.49 -0.27 2.10 16 20 C 0.05 1.26 5.49 -17.52 -0.10 1.16 16 21 N -0.83 -25.05 13.67 55.48 0.76 -24.30 16 22 Si 0.94 20.49 29.55 -169.99 -5.02 15.47 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 C -0.14 -1.68 7.13 -26.39 -0.19 -1.87 16 27 C 0.06 0.61 7.06 37.38 0.26 0.87 16 28 O -0.37 -4.36 11.35 -35.23 -0.40 -4.76 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.90 7.53 -51.93 -0.39 0.51 16 33 H 0.08 0.73 7.80 -51.93 -0.40 0.32 16 34 H 0.08 0.72 7.90 -51.92 -0.41 0.31 16 35 H 0.09 0.73 8.11 -51.93 -0.42 0.31 16 36 H 0.11 1.89 7.46 -51.93 -0.39 1.50 16 37 H 0.39 4.84 6.76 -40.82 -0.28 4.57 16 38 H 0.11 1.42 6.40 -52.49 -0.34 1.08 16 39 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.09 1.00 7.99 -51.93 -0.41 0.58 16 44 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 45 H 0.06 0.50 8.12 -51.93 -0.42 0.08 16 46 H 0.09 0.82 7.86 -51.93 -0.41 0.41 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -34.80 375.56 -8.99 -43.79 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.52 Total: 8.64 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.77 Total: -15.09 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.47 Total: -36.06 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.81 Total: -22.40 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.80 -8.99 -43.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888734933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.690 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds