Wall clock time and date at job start Tue Mar 31 2020 17:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 110.31492 * 2 1 4 4 C 1.54749 * 110.36033 * 122.21424 * 2 1 3 5 5 C 1.53463 * 103.63093 * 142.74189 * 4 2 1 6 6 C 1.52647 * 115.85314 * 129.05927 * 5 4 2 7 7 C 1.53984 * 86.73357 * 93.20997 * 6 5 4 8 8 N 1.46500 * 113.58089 * 139.18500 * 7 6 5 9 9 C 1.34773 * 120.00358 * 155.00152 * 8 7 6 10 10 O 1.21603 * 119.99810 * 0.02562 * 9 8 7 11 11 C 1.47534 * 120.00245 * 180.02562 * 9 8 7 12 12 C 1.39661 * 120.19430 * 359.97438 * 11 9 8 13 13 C 1.37830 * 119.91738 * 180.02562 * 12 11 9 14 14 C 1.38573 * 120.32471 * 359.97438 * 13 12 11 15 15 C 1.38028 * 120.40271 * 0.02562 * 14 13 12 16 16 C 1.38839 * 120.07000 * 0.29120 * 15 14 13 17 17 O 1.35520 * 120.16410 * 179.72485 * 16 15 14 18 18 C 1.34816 * 116.99583 * 354.40670 * 17 16 15 19 19 H 1.07999 * 120.00354 * 5.05952 * 18 17 16 20 20 C 1.38697 * 119.99654 * 185.06085 * 18 17 16 21 21 N 1.31518 * 120.00061 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99795 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47358 * 60.00090 * 22 20 18 24 24 H 1.48509 * 109.46971 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46919 * 299.99748 * 22 20 18 26 26 C 1.52656 * 115.82426 * 230.42046 * 5 4 2 27 27 C 1.53437 * 105.20676 * 359.70719 * 5 4 2 28 28 O 1.44515 * 110.45508 * 237.72348 * 2 1 3 29 29 H 1.08996 * 109.47818 * 297.78003 * 1 2 3 30 30 H 1.08998 * 109.47083 * 57.78857 * 1 2 3 31 31 H 1.09003 * 109.46875 * 177.77756 * 1 2 3 32 32 H 1.09002 * 110.59099 * 24.20583 * 4 2 1 33 33 H 1.08996 * 110.72458 * 261.34743 * 4 2 1 34 34 H 1.09010 * 113.66487 * 338.75073 * 6 5 4 35 35 H 1.08994 * 113.75635 * 207.68873 * 6 5 4 36 36 H 1.09002 * 113.58285 * 269.89962 * 7 6 5 37 37 H 0.97003 * 119.99760 * 335.00775 * 8 7 6 38 38 H 1.07991 * 120.04683 * 359.97438 * 12 11 9 39 39 H 1.08000 * 119.84350 * 180.02562 * 13 12 11 40 40 H 1.08001 * 119.80236 * 180.02562 * 14 13 12 41 41 H 1.08001 * 119.97022 * 180.02562 * 15 14 13 42 42 H 0.97005 * 119.99835 * 180.02562 * 21 20 18 43 43 H 1.08999 * 113.67297 * 152.30388 * 26 5 4 44 44 H 1.08999 * 113.66834 * 21.22062 * 26 5 4 45 45 H 1.08995 * 110.42744 * 95.54780 * 27 5 4 46 46 H 1.08999 * 110.42510 * 218.02874 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9085 1.0223 0.0000 4 6 2.0684 -0.7734 1.2275 5 6 3.3071 -1.4979 0.6836 6 6 4.5903 -1.3202 1.4911 7 6 4.2031 -2.6168 2.2259 8 7 5.3372 -3.5101 2.4752 9 6 5.2907 -4.3896 3.4954 10 8 4.3073 -4.4419 4.2087 11 6 6.4330 -5.2888 3.7467 12 6 7.5643 -5.2325 2.9297 13 6 8.6280 -6.0757 3.1694 14 6 8.5815 -6.9799 4.2184 15 6 7.4701 -7.0468 5.0342 16 6 6.3866 -6.2099 4.8037 17 8 5.2921 -6.2778 5.6001 18 6 5.2691 -7.2572 6.5263 19 1 6.1325 -7.8914 6.6632 20 6 4.1366 -7.4502 7.3033 21 7 3.0854 -6.6776 7.1369 22 14 4.1049 -8.8068 8.5872 23 1 5.1853 -8.5749 9.5792 24 1 2.7903 -8.8039 9.2780 25 1 4.3139 -10.1196 7.9254 26 6 3.3848 -2.9940 0.9771 27 6 3.3874 -1.1019 -0.7966 28 8 2.0351 -0.7231 -1.1448 29 1 -0.3634 0.4789 0.9091 30 1 -0.3633 0.5478 -0.8695 31 1 -0.3633 -1.0269 -0.0399 32 1 1.3293 -1.4916 1.5825 33 1 2.3464 -0.0850 2.0255 34 1 4.5863 -0.4370 2.1301 35 1 5.4993 -1.4089 0.8962 36 1 3.5936 -2.4494 3.1139 37 1 6.1215 -3.4686 1.9060 38 1 7.6054 -4.5299 2.1106 39 1 9.5024 -6.0309 2.5371 40 1 9.4199 -7.6363 4.3988 41 1 7.4415 -7.7539 5.8500 42 1 2.2934 -6.8124 7.6806 43 1 3.9521 -3.5565 0.2357 44 1 2.4197 -3.4456 1.2064 45 1 4.0647 -0.2582 -0.9285 46 1 3.7123 -1.9495 -1.4001 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888734933.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:21 Heat of formation + Delta-G solvation = -83.397383 kcal Electronic energy + Delta-G solvation = -28099.091620 eV Core-core repulsion = 24147.184804 eV Total energy + Delta-G solvation = -3951.906816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.88749 -41.07928 -39.72633 -38.16775 -37.93977 -34.59746 -34.29854 -32.99680 -31.98762 -30.56295 -29.48199 -27.38520 -27.08245 -26.89757 -25.00952 -23.42610 -22.47119 -22.29212 -21.45764 -19.92025 -19.81564 -19.04533 -17.86663 -17.57231 -16.81331 -16.57586 -16.38827 -16.31541 -16.11485 -15.92348 -15.74259 -15.46158 -15.21776 -14.93774 -14.58374 -14.30473 -14.14215 -13.96272 -13.55426 -13.44813 -13.38039 -12.99816 -12.90217 -12.81470 -12.67337 -12.51094 -12.44696 -12.34242 -12.20100 -12.15000 -11.62695 -11.42463 -11.40094 -11.29751 -10.82812 -10.62403 -10.54423 -10.01347 -9.74727 -9.03066 -8.44857 -6.15938 0.13250 0.73472 1.31357 1.44406 1.49273 2.10051 2.15495 2.32088 2.87314 2.90281 3.22427 3.36998 3.47316 3.48791 3.55498 3.82541 3.96877 3.98380 4.08410 4.10749 4.21176 4.27343 4.32413 4.50088 4.53836 4.60794 4.65616 4.70297 4.76058 4.80464 4.82930 4.86899 4.94177 4.99559 5.03245 5.07182 5.09837 5.12969 5.15994 5.26184 5.27767 5.48840 5.61730 5.67889 5.70286 5.93547 5.95901 6.17943 6.74621 6.94373 7.52411 7.80522 8.75417 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013518 B = 0.002909 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.741768 B = 9623.784148 C =11449.810697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.085 0.915 4 C -0.136 4.136 5 C -0.104 4.104 6 C -0.107 4.107 7 C 0.114 3.886 8 N -0.705 5.705 9 C 0.547 3.453 10 O -0.571 6.571 11 C -0.245 4.245 12 C -0.029 4.029 13 C -0.201 4.201 14 C -0.041 4.041 15 C -0.259 4.259 16 C 0.147 3.853 17 O -0.189 6.189 18 C -0.429 4.429 19 H 0.106 0.894 20 C -0.022 4.022 21 N -0.905 5.905 22 Si 1.021 2.979 23 H -0.253 1.253 24 H -0.273 1.273 25 H -0.254 1.254 26 C -0.136 4.136 27 C 0.064 3.936 28 O -0.398 6.398 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.413 0.587 38 H 0.163 0.837 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.122 0.878 42 H 0.270 0.730 43 H 0.101 0.899 44 H 0.047 0.953 45 H 0.084 0.916 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.188 11.601 -16.072 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.103 0.897 4 C -0.174 4.174 5 C -0.105 4.105 6 C -0.145 4.145 7 C 0.009 3.991 8 N -0.359 5.359 9 C 0.337 3.663 10 O -0.451 6.451 11 C -0.250 4.250 12 C -0.047 4.047 13 C -0.219 4.219 14 C -0.059 4.059 15 C -0.279 4.279 16 C 0.092 3.908 17 O -0.091 6.091 18 C -0.505 4.505 19 H 0.123 0.877 20 C -0.221 4.221 21 N -0.541 5.541 22 Si 0.840 3.160 23 H -0.178 1.178 24 H -0.198 1.198 25 H -0.179 1.179 26 C -0.175 4.175 27 C -0.012 4.012 28 O -0.318 6.318 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.251 0.749 38 H 0.180 0.820 39 H 0.182 0.818 40 H 0.171 0.829 41 H 0.140 0.860 42 H 0.079 0.921 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.102 0.898 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.921 11.705 -15.653 20.423 hybrid contribution -0.307 -0.831 1.075 1.393 sum 5.614 10.873 -14.578 19.034 Atomic orbital electron populations 1.21839 0.92979 1.02466 1.03279 1.23143 0.95656 0.95670 0.84109 0.89736 1.22827 0.96274 0.99565 0.98730 1.22145 0.96171 0.95528 0.96662 1.23220 0.97755 0.96062 0.97481 1.22530 0.88555 0.91178 0.96850 1.45612 1.20732 1.37575 1.32010 1.18604 0.86670 0.80620 0.80402 1.90928 1.35274 1.69917 1.48942 1.19338 0.99001 1.04652 1.02021 1.21317 0.90125 0.97283 0.95967 1.21188 1.00523 0.99143 1.01063 1.21437 0.95752 0.96298 0.92412 1.21305 0.95762 1.05102 1.05690 1.20131 0.87832 0.93394 0.89473 1.84181 1.35627 1.48044 1.41275 1.21997 1.02789 1.11402 1.14283 0.87652 1.26754 0.93488 1.01128 1.00752 1.70320 1.04625 1.39191 1.39957 0.84636 0.78541 0.76397 0.76469 1.17755 1.19789 1.17856 1.23442 1.00128 0.96065 0.97879 1.23350 0.84250 1.00876 0.92713 1.89141 1.28843 1.74912 1.38910 0.89802 0.91380 0.93085 0.91780 0.89024 0.89452 0.86236 0.90771 0.74853 0.81974 0.81761 0.82922 0.86022 0.92073 0.88078 0.93439 0.89765 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.53 71.98 0.69 -1.76 16 2 C 0.07 1.27 3.94 31.19 0.12 1.39 16 3 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 4 C -0.14 -2.67 5.99 31.35 0.19 -2.48 16 5 C -0.10 -1.96 1.17 -52.12 -0.06 -2.02 16 6 C -0.11 -1.83 7.12 30.81 0.22 -1.61 16 7 C 0.11 3.20 4.11 45.65 0.19 3.39 16 8 N -0.71 -21.51 5.30 -442.58 -2.35 -23.86 16 9 C 0.55 24.73 7.76 86.70 0.67 25.40 16 10 O -0.57 -34.00 14.77 16.86 0.25 -33.75 16 11 C -0.25 -10.59 5.89 -19.99 -0.12 -10.71 16 12 C -0.03 -0.84 9.53 22.52 0.21 -0.62 16 13 C -0.20 -5.23 10.02 22.25 0.22 -5.01 16 14 C -0.04 -1.26 10.03 22.30 0.22 -1.04 16 15 C -0.26 -11.13 9.16 22.36 0.20 -10.92 16 16 C 0.15 7.61 6.66 22.91 0.15 7.76 16 17 O -0.19 -12.12 7.84 0.82 0.01 -12.11 16 18 C -0.43 -26.19 9.49 67.93 0.64 -25.55 16 19 H 0.11 5.76 5.21 -2.91 -0.02 5.75 16 20 C -0.02 -1.32 5.49 84.85 0.47 -0.85 16 21 N -0.91 -59.70 13.67 21.62 0.30 -59.41 16 22 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 23 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 26 C -0.14 -3.38 7.13 30.81 0.22 -3.16 16 27 C 0.06 1.05 7.06 72.13 0.51 1.55 16 28 O -0.40 -8.56 11.35 -148.98 -1.69 -10.25 16 29 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.49 7.53 -2.39 -0.02 1.48 16 33 H 0.09 1.58 7.80 -2.39 -0.02 1.56 16 34 H 0.09 1.38 7.90 -2.38 -0.02 1.36 16 35 H 0.12 1.34 8.11 -2.39 -0.02 1.32 16 36 H 0.07 2.71 7.46 -2.39 -0.02 2.69 16 37 H 0.41 8.67 6.76 -92.71 -0.63 8.04 16 38 H 0.16 3.03 6.40 -2.92 -0.02 3.01 16 39 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.12 5.31 5.64 -2.91 -0.02 5.29 16 42 H 0.27 16.36 8.31 -92.70 -0.77 15.59 16 43 H 0.10 2.18 7.99 -2.39 -0.02 2.16 16 44 H 0.05 1.43 7.89 -2.39 -0.02 1.41 16 45 H 0.08 1.01 8.12 -2.39 -0.02 0.99 16 46 H 0.10 1.45 7.86 -2.39 -0.02 1.43 16 Total: -1.00 -90.22 375.56 3.68 -86.54 By element: Atomic # 1 Polarization: 32.09 SS G_CDS: 0.38 Total: 32.47 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 4.76 Total: -26.23 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -2.05 Total: -83.26 kcal Atomic # 8 Polarization: -54.68 SS G_CDS: -1.44 Total: -56.12 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -90.22 3.68 -86.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888734933.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.146 kcal (2) G-P(sol) polarization free energy of solvation -90.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds