Wall clock time and date at job start Tue Mar 31 2020 17:06:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.31796 * 2 1 4 4 C 1.54748 * 110.35632 * 237.77798 * 2 1 3 5 5 C 1.53464 * 103.62877 * 217.25339 * 4 2 1 6 6 C 1.52646 * 115.84725 * 230.96811 * 5 4 2 7 7 C 1.53991 * 86.73195 * 266.78695 * 6 5 4 8 8 N 1.46492 * 113.58161 * 220.81229 * 7 6 5 9 9 C 1.34783 * 120.00467 * 252.72434 * 8 7 6 10 10 O 1.21594 * 119.99395 * 359.97438 * 9 8 7 11 11 C 1.47531 * 120.00090 * 179.97438 * 9 8 7 12 12 C 1.39664 * 120.20001 * 0.02562 * 11 9 8 13 13 C 1.37824 * 119.91995 * 180.02562 * 12 11 9 14 14 C 1.38572 * 120.32414 * 359.97438 * 13 12 11 15 15 C 1.38027 * 120.40078 * 0.02605 * 14 13 12 16 16 C 1.38832 * 120.07136 * 359.67683 * 15 14 13 17 17 O 1.35522 * 120.16058 * 180.29781 * 16 15 14 18 18 C 1.34810 * 117.00061 * 354.39819 * 17 16 15 19 19 H 1.08001 * 120.00359 * 5.06325 * 18 17 16 20 20 C 1.38698 * 120.00065 * 185.06155 * 18 17 16 21 21 N 1.31529 * 119.99831 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00355 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46809 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47275 * 119.99982 * 22 20 18 25 25 H 1.48496 * 109.47052 * 240.00345 * 22 20 18 26 26 C 1.52657 * 115.82614 * 129.60697 * 5 4 2 27 27 C 1.53440 * 105.20796 * 0.31067 * 5 4 2 28 28 O 1.44515 * 110.44809 * 122.27735 * 2 1 3 29 29 H 1.08999 * 109.47147 * 180.70184 * 1 2 3 30 30 H 1.09002 * 109.47190 * 300.70406 * 1 2 3 31 31 H 1.08998 * 109.46881 * 60.70677 * 1 2 3 32 32 H 1.09001 * 110.59630 * 335.79098 * 4 2 1 33 33 H 1.09011 * 110.59134 * 98.72138 * 4 2 1 34 34 H 1.09006 * 113.67109 * 21.23976 * 6 5 4 35 35 H 1.08993 * 113.67483 * 152.33082 * 6 5 4 36 36 H 1.09007 * 113.65125 * 90.03265 * 7 6 5 37 37 H 0.97005 * 119.99931 * 72.72566 * 8 7 6 38 38 H 1.08003 * 120.03890 * 0.02562 * 12 11 9 39 39 H 1.08004 * 119.84096 * 179.97438 * 13 12 11 40 40 H 1.08004 * 119.79895 * 179.97438 * 14 13 12 41 41 H 1.08006 * 119.96299 * 179.97438 * 15 14 13 42 42 H 0.96997 * 119.99510 * 179.97438 * 21 20 18 43 43 H 1.08998 * 113.67519 * 207.69056 * 26 5 4 44 44 H 1.09006 * 113.66862 * 338.67726 * 26 5 4 45 45 H 1.09000 * 110.42104 * 141.95663 * 27 5 4 46 46 H 1.08999 * 110.42231 * 264.31416 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0684 -0.7736 -1.2274 5 6 3.3072 -1.4980 -0.6835 6 6 4.5903 -1.3197 -1.4908 7 6 4.2035 -2.6163 -2.2259 8 7 5.3378 -3.5093 -2.4753 9 6 5.8270 -3.6449 -3.7239 10 8 5.3265 -3.0263 -4.6433 11 6 6.9696 -4.5437 -3.9749 12 6 7.5473 -5.2565 -2.9219 13 6 8.6149 -6.0942 -3.1628 14 6 9.1189 -6.2339 -4.4460 15 6 8.5583 -5.5358 -5.4965 16 6 7.4784 -4.6922 -5.2736 17 8 6.9227 -4.0105 -6.3047 18 6 7.5360 -4.1042 -7.5016 19 1 8.3800 -4.7665 -7.6255 20 6 7.0829 -3.3502 -8.5739 21 7 6.0552 -2.5433 -8.4228 22 14 7.9321 -3.4805 -10.2326 23 1 9.0524 -4.4509 -10.1401 24 1 6.9579 -3.9456 -11.2523 25 1 8.4608 -2.1492 -10.6239 26 6 3.3853 -2.9939 -0.9773 27 6 3.3873 -1.1021 0.7968 28 8 2.0349 -0.7231 1.1448 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3634 0.5247 0.8836 31 1 -0.3633 0.5028 -0.8963 32 1 1.3293 -1.4918 -1.5823 33 1 2.3468 -0.0832 -2.0238 34 1 4.5862 -0.4366 -2.1298 35 1 5.4984 -1.4089 -0.8947 36 1 3.5930 -2.4503 -3.1136 37 1 5.7368 -4.0030 -1.7418 38 1 7.1578 -5.1514 -1.9200 39 1 9.0609 -6.6445 -2.3475 40 1 9.9560 -6.8924 -4.6251 41 1 8.9570 -5.6497 -6.4937 42 1 5.7387 -2.0156 -9.1726 43 1 3.9526 -3.5565 -0.2359 44 1 2.4199 -3.4462 -1.2050 45 1 3.7120 -1.9498 1.4002 46 1 4.0664 -0.2598 0.9290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888734934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:25 Heat of formation + Delta-G solvation = -59.734651 kcal Electronic energy + Delta-G solvation = -28080.738199 eV Core-core repulsion = 24129.857477 eV Total energy + Delta-G solvation = -3950.880722 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89361 -39.49725 -38.22464 -36.91919 -36.31695 -33.10354 -32.34290 -32.24534 -30.51451 -28.94045 -28.47460 -26.34087 -25.95170 -25.40254 -23.55046 -21.95525 -21.53247 -21.07701 -19.89806 -18.89766 -18.03688 -17.47039 -16.63563 -16.18562 -15.77135 -15.61185 -15.47873 -14.66724 -14.50235 -14.36294 -14.25238 -14.03644 -13.75789 -13.65158 -13.34553 -13.07017 -12.88648 -12.55188 -12.44523 -12.40018 -12.14042 -11.89633 -11.72768 -11.53388 -11.40625 -11.22390 -11.13180 -10.92298 -10.82295 -10.76999 -10.49094 -10.45055 -10.36645 -9.81952 -9.57234 -8.89421 -8.83391 -8.52910 -8.27930 -7.31966 -6.45550 -4.05337 1.70576 2.30763 3.10904 3.11712 3.17446 3.62363 3.71145 3.72008 3.92554 4.24228 4.33879 4.45239 4.60678 4.72867 4.85994 4.94432 5.00378 5.06350 5.10175 5.17094 5.32640 5.35168 5.39569 5.45547 5.52527 5.56589 5.62045 5.64745 5.71428 5.72203 5.79037 5.84915 5.94117 5.98746 6.02896 6.07178 6.11217 6.33520 6.55437 6.67117 6.68553 6.90254 6.99845 7.05600 7.23197 7.28757 7.68465 7.91347 8.13373 8.94335 9.10013 9.66825 10.68336 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.002851 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.036653 B = 9820.291978 C =11573.840221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.067 0.933 4 C -0.131 4.131 5 C -0.114 4.114 6 C -0.139 4.139 7 C 0.134 3.866 8 N -0.734 5.734 9 C 0.555 3.445 10 O -0.501 6.501 11 C -0.228 4.228 12 C -0.038 4.038 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.238 4.238 16 C 0.189 3.811 17 O -0.124 6.124 18 C -0.403 4.403 19 H 0.094 0.906 20 C 0.044 3.956 21 N -0.832 5.832 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.275 1.275 26 C -0.130 4.130 27 C 0.063 3.937 28 O -0.376 6.376 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.392 0.608 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.110 0.890 41 H 0.132 0.868 42 H 0.271 0.729 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.196 0.907 16.143 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.085 0.915 4 C -0.168 4.168 5 C -0.114 4.114 6 C -0.178 4.178 7 C 0.028 3.972 8 N -0.388 5.388 9 C 0.344 3.656 10 O -0.375 6.375 11 C -0.232 4.232 12 C -0.057 4.057 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.257 4.257 16 C 0.129 3.871 17 O -0.022 6.022 18 C -0.479 4.479 19 H 0.112 0.888 20 C -0.163 4.163 21 N -0.464 5.464 22 Si 0.765 3.235 23 H -0.190 1.190 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.168 4.168 27 C -0.014 4.014 28 O -0.295 6.295 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.227 0.773 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.094 0.906 45 H 0.109 0.891 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.056 1.662 15.417 16.310 hybrid contribution 0.929 -0.361 -0.589 1.158 sum -4.127 1.301 14.828 15.446 Atomic orbital electron populations 1.21809 0.93306 1.02943 1.02343 1.23041 0.95181 0.95359 0.85109 0.91486 1.22784 0.96304 0.99635 0.98090 1.22246 0.96439 0.97116 0.95645 1.23406 0.96246 0.99782 0.98353 1.22348 0.88225 0.89330 0.97265 1.45879 1.34818 1.48139 1.09921 1.18285 0.83274 0.81891 0.82132 1.90941 1.58889 1.45387 1.42293 1.18868 1.03760 1.08479 0.92141 1.20752 0.94630 0.94077 0.96263 1.20462 1.01728 1.06061 0.96757 1.20899 0.97269 0.96174 0.92618 1.21166 1.00989 1.03279 1.00288 1.19286 0.89983 0.89937 0.87866 1.84172 1.45475 1.57262 1.15298 1.21545 1.15076 1.26573 0.84718 0.88835 1.25386 0.96378 0.95137 0.99431 1.70143 1.22039 1.22364 1.31845 0.85664 0.78963 0.78619 0.80262 1.18975 1.20017 1.20011 1.23302 1.01019 0.94691 0.97764 1.23228 0.84572 0.99743 0.93807 1.89146 1.27695 1.74496 1.38168 0.91755 0.92043 0.91074 0.90007 0.89848 0.90610 0.89505 0.86832 0.77334 0.87088 0.87291 0.87194 0.85080 0.91938 0.89505 0.90564 0.89098 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.53 37.16 0.35 -0.83 16 2 C 0.07 0.67 3.94 -25.81 -0.10 0.57 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -1.29 5.99 -25.57 -0.15 -1.44 16 5 C -0.11 -1.15 1.17 -154.41 -0.18 -1.33 16 6 C -0.14 -1.64 7.16 -26.40 -0.19 -1.83 16 7 C 0.13 1.86 4.11 -66.92 -0.28 1.59 16 8 N -0.73 -11.47 5.30 -53.86 -0.29 -11.76 16 9 C 0.55 12.00 7.76 -12.47 -0.10 11.91 16 10 O -0.50 -13.56 14.77 -16.57 -0.24 -13.80 16 11 C -0.23 -4.89 5.89 -104.81 -0.62 -5.51 16 12 C -0.04 -0.65 9.53 -39.20 -0.37 -1.02 16 13 C -0.23 -3.75 10.02 -39.61 -0.40 -4.14 16 14 C -0.05 -0.90 10.03 -39.54 -0.40 -1.29 16 15 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 16 C 0.19 4.68 6.66 -38.60 -0.26 4.42 16 17 O -0.12 -3.65 7.84 -21.05 -0.16 -3.81 16 18 C -0.40 -11.39 9.49 30.90 0.29 -11.09 16 19 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 20 C 0.04 1.23 5.49 -17.51 -0.10 1.14 16 21 N -0.83 -25.00 13.67 55.48 0.76 -24.24 16 22 Si 0.94 20.48 29.55 -169.99 -5.02 15.45 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.13 -1.36 7.08 -26.39 -0.19 -1.54 16 27 C 0.06 0.61 7.07 37.39 0.26 0.87 16 28 O -0.38 -4.26 11.35 -35.23 -0.40 -4.66 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.80 7.53 -51.93 -0.39 0.41 16 33 H 0.08 0.82 7.80 -51.92 -0.40 0.42 16 34 H 0.08 0.97 7.90 -51.93 -0.41 0.56 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.11 1.89 7.46 -51.92 -0.39 1.50 16 37 H 0.39 4.86 6.76 -40.82 -0.28 4.59 16 38 H 0.11 1.42 6.40 -52.48 -0.34 1.09 16 39 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 40 H 0.11 1.58 8.06 -52.48 -0.42 1.15 16 41 H 0.13 2.78 5.64 -52.48 -0.30 2.48 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.09 0.78 7.96 -51.93 -0.41 0.36 16 44 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 45 H 0.09 0.77 7.86 -51.93 -0.41 0.36 16 46 H 0.06 0.55 8.12 -51.93 -0.42 0.13 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -34.64 375.56 -8.99 -43.63 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.52 Total: 8.54 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.77 Total: -15.01 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.47 Total: -36.00 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.81 Total: -22.27 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.64 -8.99 -43.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888734934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.105 kcal (2) G-P(sol) polarization free energy of solvation -34.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds