Wall clock time and date at job start Tue Mar 31 2020 17:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.31796 * 2 1 4 4 C 1.54748 * 110.35632 * 237.77798 * 2 1 3 5 5 C 1.53464 * 103.62877 * 217.25339 * 4 2 1 6 6 C 1.52646 * 115.84725 * 230.96811 * 5 4 2 7 7 C 1.53991 * 86.73195 * 266.78695 * 6 5 4 8 8 N 1.46492 * 113.58161 * 220.81229 * 7 6 5 9 9 C 1.34783 * 120.00467 * 252.72434 * 8 7 6 10 10 O 1.21594 * 119.99395 * 359.97438 * 9 8 7 11 11 C 1.47531 * 120.00090 * 179.97438 * 9 8 7 12 12 C 1.39664 * 120.20001 * 0.02562 * 11 9 8 13 13 C 1.37824 * 119.91995 * 180.02562 * 12 11 9 14 14 C 1.38572 * 120.32414 * 359.97438 * 13 12 11 15 15 C 1.38027 * 120.40078 * 0.02605 * 14 13 12 16 16 C 1.38832 * 120.07136 * 359.67683 * 15 14 13 17 17 O 1.35522 * 120.16058 * 180.29781 * 16 15 14 18 18 C 1.34810 * 117.00061 * 354.39819 * 17 16 15 19 19 H 1.08001 * 120.00359 * 5.06325 * 18 17 16 20 20 C 1.38698 * 120.00065 * 185.06155 * 18 17 16 21 21 N 1.31529 * 119.99831 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00355 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46809 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47275 * 119.99982 * 22 20 18 25 25 H 1.48496 * 109.47052 * 240.00345 * 22 20 18 26 26 C 1.52657 * 115.82614 * 129.60697 * 5 4 2 27 27 C 1.53440 * 105.20796 * 0.31067 * 5 4 2 28 28 O 1.44515 * 110.44809 * 122.27735 * 2 1 3 29 29 H 1.08999 * 109.47147 * 180.70184 * 1 2 3 30 30 H 1.09002 * 109.47190 * 300.70406 * 1 2 3 31 31 H 1.08998 * 109.46881 * 60.70677 * 1 2 3 32 32 H 1.09001 * 110.59630 * 335.79098 * 4 2 1 33 33 H 1.09011 * 110.59134 * 98.72138 * 4 2 1 34 34 H 1.09006 * 113.67109 * 21.23976 * 6 5 4 35 35 H 1.08993 * 113.67483 * 152.33082 * 6 5 4 36 36 H 1.09007 * 113.65125 * 90.03265 * 7 6 5 37 37 H 0.97005 * 119.99931 * 72.72566 * 8 7 6 38 38 H 1.08003 * 120.03890 * 0.02562 * 12 11 9 39 39 H 1.08004 * 119.84096 * 179.97438 * 13 12 11 40 40 H 1.08004 * 119.79895 * 179.97438 * 14 13 12 41 41 H 1.08006 * 119.96299 * 179.97438 * 15 14 13 42 42 H 0.96997 * 119.99510 * 179.97438 * 21 20 18 43 43 H 1.08998 * 113.67519 * 207.69056 * 26 5 4 44 44 H 1.09006 * 113.66862 * 338.67726 * 26 5 4 45 45 H 1.09000 * 110.42104 * 141.95663 * 27 5 4 46 46 H 1.08999 * 110.42231 * 264.31416 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0684 -0.7736 -1.2274 5 6 3.3072 -1.4980 -0.6835 6 6 4.5903 -1.3197 -1.4908 7 6 4.2035 -2.6163 -2.2259 8 7 5.3378 -3.5093 -2.4753 9 6 5.8270 -3.6449 -3.7239 10 8 5.3265 -3.0263 -4.6433 11 6 6.9696 -4.5437 -3.9749 12 6 7.5473 -5.2565 -2.9219 13 6 8.6149 -6.0942 -3.1628 14 6 9.1189 -6.2339 -4.4460 15 6 8.5583 -5.5358 -5.4965 16 6 7.4784 -4.6922 -5.2736 17 8 6.9227 -4.0105 -6.3047 18 6 7.5360 -4.1042 -7.5016 19 1 8.3800 -4.7665 -7.6255 20 6 7.0829 -3.3502 -8.5739 21 7 6.0552 -2.5433 -8.4228 22 14 7.9321 -3.4805 -10.2326 23 1 9.0524 -4.4509 -10.1401 24 1 6.9579 -3.9456 -11.2523 25 1 8.4608 -2.1492 -10.6239 26 6 3.3853 -2.9939 -0.9773 27 6 3.3873 -1.1021 0.7968 28 8 2.0349 -0.7231 1.1448 29 1 -0.3633 -1.0276 0.0126 30 1 -0.3634 0.5247 0.8836 31 1 -0.3633 0.5028 -0.8963 32 1 1.3293 -1.4918 -1.5823 33 1 2.3468 -0.0832 -2.0238 34 1 4.5862 -0.4366 -2.1298 35 1 5.4984 -1.4089 -0.8947 36 1 3.5930 -2.4503 -3.1136 37 1 5.7368 -4.0030 -1.7418 38 1 7.1578 -5.1514 -1.9200 39 1 9.0609 -6.6445 -2.3475 40 1 9.9560 -6.8924 -4.6251 41 1 8.9570 -5.6497 -6.4937 42 1 5.7387 -2.0156 -9.1726 43 1 3.9526 -3.5565 -0.2359 44 1 2.4199 -3.4462 -1.2050 45 1 3.7120 -1.9498 1.4002 46 1 4.0664 -0.2598 0.9290 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888734934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:24 Heat of formation + Delta-G solvation = -83.278651 kcal Electronic energy + Delta-G solvation = -28081.759144 eV Core-core repulsion = 24129.857477 eV Total energy + Delta-G solvation = -3951.901667 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.89127 -41.08089 -39.72690 -38.16825 -37.93968 -34.59503 -34.29506 -32.99719 -31.98751 -30.56326 -29.48216 -27.38567 -27.07854 -26.89351 -25.01517 -23.42739 -22.47304 -22.31132 -21.43014 -19.92387 -19.81636 -19.04582 -17.85330 -17.63144 -16.76365 -16.61675 -16.42848 -16.31033 -16.01158 -15.97554 -15.71618 -15.40724 -15.18068 -15.04182 -14.55844 -14.32269 -14.21929 -13.97703 -13.55347 -13.42824 -13.30262 -13.02641 -12.87947 -12.80102 -12.66896 -12.56013 -12.45660 -12.33403 -12.23218 -12.10227 -11.62215 -11.40652 -11.39111 -11.30680 -10.84623 -10.63083 -10.54302 -10.01836 -9.75025 -9.03073 -8.45026 -6.15801 0.13250 0.73223 1.31722 1.42285 1.51454 2.10192 2.15184 2.32003 2.87412 2.88917 3.22372 3.38139 3.47097 3.48164 3.54233 3.84529 3.93347 3.98768 4.08437 4.10878 4.20610 4.26824 4.32294 4.49417 4.53619 4.59667 4.65288 4.70210 4.76758 4.80711 4.83939 4.85658 4.95006 4.99716 5.03838 5.07581 5.09289 5.12507 5.15827 5.25623 5.28471 5.48912 5.61761 5.67919 5.70327 5.91136 5.96348 6.17828 6.74495 6.94559 7.52383 7.80733 8.75696 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014102 B = 0.002851 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.036653 B = 9820.291978 C =11573.840221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.136 4.136 5 C -0.104 4.104 6 C -0.133 4.133 7 C 0.114 3.886 8 N -0.706 5.706 9 C 0.547 3.453 10 O -0.571 6.571 11 C -0.245 4.245 12 C -0.029 4.029 13 C -0.201 4.201 14 C -0.041 4.041 15 C -0.259 4.259 16 C 0.147 3.853 17 O -0.189 6.189 18 C -0.427 4.427 19 H 0.106 0.894 20 C -0.023 4.023 21 N -0.905 5.905 22 Si 1.022 2.978 23 H -0.246 1.246 24 H -0.269 1.269 25 H -0.269 1.269 26 C -0.111 4.111 27 C 0.064 3.936 28 O -0.392 6.392 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.105 0.895 36 H 0.074 0.926 37 H 0.413 0.587 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.122 0.878 42 H 0.270 0.730 43 H 0.116 0.884 44 H 0.077 0.923 45 H 0.110 0.890 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -1.429 20.101 20.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.090 0.910 4 C -0.173 4.173 5 C -0.105 4.105 6 C -0.172 4.172 7 C 0.009 3.991 8 N -0.360 5.360 9 C 0.338 3.662 10 O -0.450 6.450 11 C -0.250 4.250 12 C -0.047 4.047 13 C -0.219 4.219 14 C -0.059 4.059 15 C -0.278 4.278 16 C 0.092 3.908 17 O -0.092 6.092 18 C -0.503 4.503 19 H 0.123 0.877 20 C -0.222 4.222 21 N -0.541 5.541 22 Si 0.840 3.160 23 H -0.169 1.169 24 H -0.194 1.194 25 H -0.194 1.194 26 C -0.149 4.149 27 C -0.012 4.012 28 O -0.311 6.311 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.123 0.877 36 H 0.092 0.908 37 H 0.251 0.749 38 H 0.180 0.820 39 H 0.182 0.818 40 H 0.171 0.829 41 H 0.139 0.861 42 H 0.079 0.921 43 H 0.135 0.865 44 H 0.096 0.904 45 H 0.128 0.872 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.949 -0.731 19.499 19.734 hybrid contribution 0.385 0.173 -1.373 1.436 sum -2.564 -0.559 18.126 18.315 Atomic orbital electron populations 1.21817 0.92333 1.02969 1.03131 1.23121 0.96042 0.95316 0.84269 0.90973 1.22819 0.96472 0.99704 0.98340 1.22140 0.95268 0.96838 0.96266 1.23375 0.98085 0.97599 0.98116 1.22521 0.88078 0.90960 0.97521 1.45619 1.34410 1.47538 1.08398 1.18590 0.83234 0.81328 0.83090 1.90925 1.61016 1.48148 1.44880 1.19338 1.03999 1.09176 0.92455 1.21317 0.94107 0.92298 0.97000 1.21185 0.99619 1.03636 0.97454 1.21434 0.97481 0.94935 0.92058 1.21301 1.00875 1.04096 1.01541 1.20119 0.91585 0.90554 0.88525 1.84179 1.47918 1.60649 1.16416 1.22066 1.15669 1.27143 0.85373 0.87651 1.26750 0.97066 0.94484 1.03869 1.70334 1.25257 1.25241 1.33263 0.84508 0.78132 0.79105 0.74232 1.16875 1.19370 1.19395 1.23276 1.00591 0.95254 0.95754 1.23325 0.84162 1.00827 0.92886 1.89133 1.28511 1.74744 1.38759 0.92088 0.91529 0.90054 0.90151 0.90600 0.92452 0.87702 0.90759 0.74891 0.82016 0.81788 0.82943 0.86054 0.92083 0.86544 0.90420 0.87179 0.91239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.53 71.98 0.69 -1.51 16 2 C 0.07 1.26 3.94 31.19 0.12 1.38 16 3 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 4 C -0.14 -2.67 5.99 31.35 0.19 -2.48 16 5 C -0.10 -1.96 1.17 -52.12 -0.06 -2.02 16 6 C -0.13 -3.07 7.16 30.81 0.22 -2.85 16 7 C 0.11 3.21 4.11 45.65 0.19 3.39 16 8 N -0.71 -21.48 5.30 -442.58 -2.35 -23.83 16 9 C 0.55 24.61 7.76 86.69 0.67 25.29 16 10 O -0.57 -33.70 14.77 16.88 0.25 -33.45 16 11 C -0.24 -10.53 5.89 -19.99 -0.12 -10.65 16 12 C -0.03 -0.84 9.53 22.52 0.21 -0.63 16 13 C -0.20 -5.22 10.02 22.25 0.22 -5.00 16 14 C -0.04 -1.26 10.03 22.30 0.22 -1.04 16 15 C -0.26 -11.08 9.16 22.36 0.20 -10.87 16 16 C 0.15 7.60 6.66 22.91 0.15 7.76 16 17 O -0.19 -12.08 7.84 0.86 0.01 -12.08 16 18 C -0.43 -25.94 9.49 67.93 0.64 -25.30 16 19 H 0.11 5.76 5.21 -2.91 -0.02 5.75 16 20 C -0.02 -1.35 5.49 84.85 0.47 -0.88 16 21 N -0.91 -59.40 13.67 21.62 0.30 -59.11 16 22 Si 1.02 44.46 29.55 68.60 2.03 46.49 16 23 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 C -0.11 -2.08 7.08 30.81 0.22 -1.86 16 27 C 0.06 1.05 7.07 72.13 0.51 1.56 16 28 O -0.39 -8.04 11.35 -148.98 -1.69 -9.74 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.59 7.53 -2.39 -0.02 1.57 16 33 H 0.08 1.59 7.80 -2.38 -0.02 1.57 16 34 H 0.06 1.54 7.90 -2.38 -0.02 1.52 16 35 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.71 7.46 -2.38 -0.02 2.69 16 37 H 0.41 8.72 6.76 -92.70 -0.63 8.09 16 38 H 0.16 3.03 6.40 -2.91 -0.02 3.01 16 39 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 40 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.12 5.30 5.64 -2.91 -0.02 5.28 16 42 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 43 H 0.12 1.53 7.96 -2.39 -0.02 1.51 16 44 H 0.08 1.48 7.90 -2.38 -0.02 1.47 16 45 H 0.11 1.39 7.86 -2.39 -0.02 1.37 16 46 H 0.07 1.04 8.12 -2.39 -0.02 1.02 16 Total: -1.00 -88.64 375.56 3.68 -84.96 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: 0.38 Total: 32.48 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 4.76 Total: -25.72 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -2.05 Total: -82.94 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -1.44 Total: -55.27 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -88.64 3.68 -84.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888734934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.681 kcal (2) G-P(sol) polarization free energy of solvation -88.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds