Wall clock time and date at job start Tue Mar 31 2020 17:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00358 * 2 1 4 4 O 1.20830 * 119.99567 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00194 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.83518 * 16.76623 * 5 3 2 7 7 C 1.53423 * 109.79676 * 255.93315 * 5 3 2 8 8 H 1.09006 * 109.57370 * 57.40172 * 7 5 3 9 9 C 1.53002 * 109.57576 * 297.15119 * 7 5 3 10 10 C 1.52856 * 108.85629 * 177.21177 * 7 5 3 11 11 C 1.50594 * 110.56121 * 51.25176 * 10 7 5 12 12 C 1.38514 * 118.93529 * 159.16287 * 11 10 7 13 13 C 1.38120 * 120.30385 * 179.77971 * 12 11 10 14 14 C 1.38304 * 120.15378 * 0.31875 * 13 12 11 15 15 C 1.38037 * 119.90615 * 0.05820 * 14 13 12 16 16 C 1.38571 * 121.50195 * 339.63879 * 11 10 7 17 17 N 1.40179 * 120.81704 * 0.10547 * 16 11 10 18 18 C 1.34776 * 120.55191 * 166.69668 * 17 16 11 19 19 O 1.21286 * 120.00032 * 157.85367 * 18 17 16 20 20 C 1.50704 * 119.99911 * 337.85669 * 18 17 16 21 21 H 1.09000 * 109.47098 * 85.90956 * 20 18 17 22 22 C 1.52997 * 109.46902 * 325.90596 * 20 18 17 23 23 C 1.50704 * 109.46826 * 205.91052 * 20 18 17 24 24 H 1.08001 * 120.00053 * 359.97438 * 23 20 18 25 25 C 1.37881 * 119.99549 * 179.97438 * 23 20 18 26 26 N 1.31510 * 120.00141 * 359.97438 * 25 23 20 27 27 Si 1.86803 * 119.99521 * 179.97438 * 25 23 20 28 28 H 1.48500 * 109.46917 * 60.00103 * 27 25 23 29 29 H 1.48498 * 109.46698 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47097 * 299.99850 * 27 25 23 31 31 H 1.09006 * 109.47535 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47556 * 300.00286 * 1 2 3 33 33 H 1.09010 * 109.46522 * 60.00234 * 1 2 3 34 34 H 1.08998 * 109.46829 * 59.99823 * 9 7 5 35 35 H 1.08994 * 109.47117 * 180.02562 * 9 7 5 36 36 H 1.09000 * 109.46524 * 299.99943 * 9 7 5 37 37 H 1.09000 * 109.27018 * 171.69260 * 10 7 5 38 38 H 1.08999 * 109.27004 * 291.17156 * 10 7 5 39 39 H 1.08004 * 119.84601 * 0.05177 * 12 11 10 40 40 H 1.07994 * 119.92075 * 180.29223 * 13 12 11 41 41 H 1.07994 * 120.04942 * 180.08459 * 14 13 12 42 42 H 1.07996 * 119.98276 * 179.97438 * 15 14 13 43 43 H 1.09001 * 109.47442 * 267.55169 * 22 20 18 44 44 H 1.09006 * 109.47148 * 27.55572 * 22 20 18 45 45 H 1.09000 * 109.47333 * 147.55154 * 22 20 18 46 46 H 0.97004 * 120.00047 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9872 0.3136 -0.2948 7 6 4.0664 1.6526 1.4010 8 1 3.7068 0.9227 2.1264 9 6 3.5474 3.0431 1.7727 10 6 5.5949 1.6583 1.3949 11 6 6.1161 2.4939 0.2556 12 6 7.4107 2.9823 0.3203 13 6 7.9191 3.7479 -0.7108 14 6 7.1353 4.0374 -1.8129 15 6 5.8415 3.5611 -1.8816 16 6 5.3279 2.7903 -0.8448 17 7 4.0102 2.3200 -0.9318 18 6 3.1644 2.8186 -1.8551 19 8 2.1985 2.1733 -2.2040 20 6 3.4188 4.1779 -2.4541 21 1 4.0978 4.0803 -3.3012 22 6 4.0474 5.0904 -1.3991 23 6 2.1154 4.7731 -2.9208 24 1 1.1949 4.2220 -2.7966 25 6 2.0980 6.0212 -3.5065 26 7 3.2189 6.6924 -3.6573 27 14 0.4824 6.7587 -4.0857 28 1 -0.4432 6.8908 -2.9320 29 1 0.7330 8.0986 -4.6746 30 1 -0.1268 5.8731 -5.1103 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 2.4575 3.0378 1.7662 35 1 3.9040 3.3100 2.7675 36 1 3.9116 3.7722 1.0489 37 1 5.9568 2.0669 2.3384 38 1 5.9580 0.6367 1.2830 39 1 8.0269 2.7598 1.1789 40 1 8.9309 4.1215 -0.6561 41 1 7.5349 4.6350 -2.6188 42 1 5.2282 3.7868 -2.7414 43 1 3.2627 5.6445 -0.8839 44 1 4.5989 4.4866 -0.6784 45 1 4.7284 5.7904 -1.8833 46 1 3.2066 7.5707 -4.0690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894150205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:37 Heat of formation + Delta-G solvation = -43.144975 kcal Electronic energy + Delta-G solvation = -31172.983917 eV Core-core repulsion = 27222.822577 eV Total energy + Delta-G solvation = -3950.161340 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70097 -39.80565 -38.16291 -36.88982 -35.79635 -34.62827 -33.46273 -31.07441 -30.99603 -29.27417 -28.16436 -26.80259 -25.96014 -25.11447 -23.51573 -22.57760 -21.62826 -21.13210 -19.78373 -18.63600 -17.36959 -17.13911 -16.61364 -16.40412 -15.91499 -15.70530 -15.29766 -15.06682 -14.51618 -14.35068 -14.17081 -14.01752 -13.50147 -13.34728 -13.22075 -12.99318 -12.68958 -12.39982 -12.13685 -12.04998 -11.86957 -11.51298 -11.44509 -11.32361 -11.15672 -10.94699 -10.91324 -10.81101 -10.52296 -10.46509 -10.43586 -10.19273 -10.09427 -9.93538 -9.52374 -8.84622 -8.83116 -8.43761 -8.25551 -7.29422 -6.06836 -4.07616 1.64790 1.73889 2.37777 2.81443 3.31059 3.35456 3.37541 3.40244 3.45729 4.12269 4.45509 4.50417 4.73525 4.85933 5.01762 5.05612 5.21816 5.27643 5.29548 5.34584 5.38997 5.40244 5.50806 5.61984 5.66324 5.72297 5.80732 5.86272 5.90605 6.01100 6.10365 6.19300 6.28752 6.42267 6.50407 6.65896 6.69945 6.76001 6.82468 6.84371 6.94247 7.07543 7.31389 7.45321 7.66749 7.87130 7.94533 8.10296 8.24594 8.81312 8.97635 9.55579 11.02606 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009827 B = 0.006798 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.558124 B = 4117.749484 C = 6329.190217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.362 6.362 3 C 0.469 3.531 4 O -0.469 6.469 5 C 0.156 3.844 6 H 0.101 0.899 7 C -0.094 4.094 8 H 0.090 0.910 9 C -0.156 4.156 10 C -0.063 4.063 11 C -0.136 4.136 12 C -0.100 4.100 13 C -0.150 4.150 14 C -0.098 4.098 15 C -0.154 4.154 16 C 0.190 3.810 17 N -0.564 5.564 18 C 0.532 3.468 19 O -0.508 6.508 20 C 0.036 3.964 21 H 0.068 0.932 22 C -0.136 4.136 23 C -0.503 4.503 24 H 0.069 0.931 25 C 0.063 3.937 26 N -0.891 5.891 27 Si 0.900 3.100 28 H -0.277 1.277 29 H -0.287 1.287 30 H -0.276 1.276 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.167 0.833 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.425 -10.751 10.830 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.279 6.279 3 C 0.309 3.691 4 O -0.353 6.353 5 C 0.052 3.948 6 H 0.119 0.881 7 C -0.113 4.113 8 H 0.109 0.891 9 C -0.213 4.213 10 C -0.100 4.100 11 C -0.139 4.139 12 C -0.118 4.118 13 C -0.169 4.169 14 C -0.117 4.117 15 C -0.173 4.173 16 C 0.095 3.905 17 N -0.291 5.291 18 C 0.326 3.674 19 O -0.381 6.381 20 C 0.016 3.984 21 H 0.085 0.915 22 C -0.193 4.193 23 C -0.541 4.541 24 H 0.087 0.913 25 C -0.139 4.139 26 N -0.530 5.530 27 Si 0.728 3.272 28 H -0.202 1.202 29 H -0.213 1.213 30 H -0.202 1.202 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.184 0.816 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.548 -10.642 10.521 16.334 hybrid contribution -1.068 0.600 -0.323 1.267 sum 5.480 -10.042 10.198 15.325 Atomic orbital electron populations 1.23182 0.76324 1.02990 1.02773 1.86384 1.23419 1.33286 1.84815 1.22834 0.90869 0.81965 0.73413 1.90744 1.66293 1.35712 1.42578 1.20677 0.88573 0.93576 0.92014 0.88129 1.21393 0.96422 0.99951 0.93542 0.89149 1.21977 1.02180 0.95553 1.01603 1.20370 0.93140 0.99471 0.97062 1.19235 0.95165 1.04542 0.94977 1.20688 0.94080 0.98291 0.98764 1.20929 0.99882 1.01108 0.95020 1.20923 0.93207 0.99348 0.98224 1.22403 0.96721 0.98052 1.00154 1.17297 0.82958 0.95941 0.94302 1.46047 1.10862 1.38130 1.34111 1.22301 0.80240 0.88834 0.76060 1.90536 1.29410 1.59763 1.58375 1.19245 0.99155 0.85402 0.94628 0.91515 1.22444 1.00053 0.99302 0.97519 1.20986 0.92377 1.01681 1.39051 0.91265 1.24896 0.96691 0.96701 0.95578 1.69943 1.25769 1.13268 1.43996 0.86511 0.83685 0.77931 0.79078 1.20227 1.21271 1.20172 0.88542 0.92297 0.91473 0.91638 0.92424 0.90878 0.89818 0.90581 0.86434 0.86642 0.85806 0.81637 0.93876 0.94133 0.91397 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.56 101.05 1.07 1.63 16 2 O -0.36 -5.95 10.56 -39.24 -0.41 -6.36 16 3 C 0.47 8.79 4.75 36.01 0.17 8.96 16 4 O -0.47 -10.49 12.40 -26.61 -0.33 -10.82 16 5 C 0.16 2.57 2.99 -68.63 -0.20 2.36 16 6 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 7 C -0.09 -1.23 2.72 -90.47 -0.25 -1.47 16 8 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 9 C -0.16 -2.37 8.48 37.16 0.31 -2.05 16 10 C -0.06 -0.71 5.22 -28.01 -0.15 -0.86 16 11 C -0.14 -1.91 5.29 -104.45 -0.55 -2.46 16 12 C -0.10 -1.24 9.66 -39.52 -0.38 -1.63 16 13 C -0.15 -1.95 10.04 -39.60 -0.40 -2.34 16 14 C -0.10 -1.48 10.05 -39.63 -0.40 -1.88 16 15 C -0.15 -2.73 6.00 -39.36 -0.24 -2.97 16 16 C 0.19 3.27 3.58 -83.62 -0.30 2.97 16 17 N -0.56 -10.82 2.09 -107.04 -0.22 -11.05 16 18 C 0.53 12.58 5.64 -10.98 -0.06 12.52 16 19 O -0.51 -13.35 12.91 -18.18 -0.23 -13.58 16 20 C 0.04 0.90 1.74 -92.92 -0.16 0.73 16 21 H 0.07 1.72 5.79 -51.93 -0.30 1.42 16 22 C -0.14 -3.18 6.61 37.16 0.25 -2.94 16 23 C -0.50 -14.44 8.13 -34.44 -0.28 -14.72 16 24 H 0.07 2.13 7.05 -52.49 -0.37 1.76 16 25 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 26 N -0.89 -24.91 11.97 55.43 0.66 -24.24 16 27 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 28 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 31 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 33 H 0.07 1.05 8.13 -51.92 -0.42 0.62 16 34 H 0.06 1.12 6.24 -51.93 -0.32 0.80 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.31 5.17 -51.93 -0.27 1.04 16 37 H 0.08 0.78 8.11 -51.93 -0.42 0.36 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.12 1.14 8.06 -52.48 -0.42 0.71 16 40 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 42 H 0.17 3.37 3.44 -52.49 -0.18 3.19 16 43 H 0.04 1.11 7.80 -51.93 -0.40 0.70 16 44 H 0.04 0.85 2.48 -51.93 -0.13 0.72 16 45 H 0.07 1.63 7.25 -51.93 -0.38 1.25 16 46 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 350.33 15.07 5.28 5.28 Total: -1.00 -33.03 350.33 -8.08 -41.11 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.14 Total: 4.95 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -1.66 Total: -2.47 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 0.44 Total: -35.29 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.98 Total: -30.77 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.03 -8.08 -41.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894150205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.030 kcal (2) G-P(sol) polarization free energy of solvation -33.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds