Wall clock time and date at job start Tue Mar 31 2020 17:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34225 * 117.00358 * 2 1 4 4 O 1.20830 * 119.99567 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00194 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.83518 * 16.76623 * 5 3 2 7 7 C 1.53423 * 109.79676 * 255.93315 * 5 3 2 8 8 H 1.09006 * 109.57370 * 57.40172 * 7 5 3 9 9 C 1.53002 * 109.57576 * 297.15119 * 7 5 3 10 10 C 1.52856 * 108.85629 * 177.21177 * 7 5 3 11 11 C 1.50594 * 110.56121 * 51.25176 * 10 7 5 12 12 C 1.38514 * 118.93529 * 159.16287 * 11 10 7 13 13 C 1.38120 * 120.30385 * 179.77971 * 12 11 10 14 14 C 1.38304 * 120.15378 * 0.31875 * 13 12 11 15 15 C 1.38037 * 119.90615 * 0.05820 * 14 13 12 16 16 C 1.38571 * 121.50195 * 339.63879 * 11 10 7 17 17 N 1.40179 * 120.81704 * 0.10547 * 16 11 10 18 18 C 1.34776 * 120.55191 * 166.69668 * 17 16 11 19 19 O 1.21286 * 120.00032 * 157.85367 * 18 17 16 20 20 C 1.50704 * 119.99911 * 337.85669 * 18 17 16 21 21 H 1.09000 * 109.47098 * 85.90956 * 20 18 17 22 22 C 1.52997 * 109.46902 * 325.90596 * 20 18 17 23 23 C 1.50704 * 109.46826 * 205.91052 * 20 18 17 24 24 H 1.08001 * 120.00053 * 359.97438 * 23 20 18 25 25 C 1.37881 * 119.99549 * 179.97438 * 23 20 18 26 26 N 1.31510 * 120.00141 * 359.97438 * 25 23 20 27 27 Si 1.86803 * 119.99521 * 179.97438 * 25 23 20 28 28 H 1.48500 * 109.46917 * 60.00103 * 27 25 23 29 29 H 1.48498 * 109.46698 * 179.97438 * 27 25 23 30 30 H 1.48496 * 109.47097 * 299.99850 * 27 25 23 31 31 H 1.09006 * 109.47535 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47556 * 300.00286 * 1 2 3 33 33 H 1.09010 * 109.46522 * 60.00234 * 1 2 3 34 34 H 1.08998 * 109.46829 * 59.99823 * 9 7 5 35 35 H 1.08994 * 109.47117 * 180.02562 * 9 7 5 36 36 H 1.09000 * 109.46524 * 299.99943 * 9 7 5 37 37 H 1.09000 * 109.27018 * 171.69260 * 10 7 5 38 38 H 1.08999 * 109.27004 * 291.17156 * 10 7 5 39 39 H 1.08004 * 119.84601 * 0.05177 * 12 11 10 40 40 H 1.07994 * 119.92075 * 180.29223 * 13 12 11 41 41 H 1.07994 * 120.04942 * 180.08459 * 14 13 12 42 42 H 1.07996 * 119.98276 * 179.97438 * 15 14 13 43 43 H 1.09001 * 109.47442 * 267.55169 * 22 20 18 44 44 H 1.09006 * 109.47148 * 27.55572 * 22 20 18 45 45 H 1.09000 * 109.47333 * 147.55154 * 22 20 18 46 46 H 0.97004 * 120.00047 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9872 0.3136 -0.2948 7 6 4.0664 1.6526 1.4010 8 1 3.7068 0.9227 2.1264 9 6 3.5474 3.0431 1.7727 10 6 5.5949 1.6583 1.3949 11 6 6.1161 2.4939 0.2556 12 6 7.4107 2.9823 0.3203 13 6 7.9191 3.7479 -0.7108 14 6 7.1353 4.0374 -1.8129 15 6 5.8415 3.5611 -1.8816 16 6 5.3279 2.7903 -0.8448 17 7 4.0102 2.3200 -0.9318 18 6 3.1644 2.8186 -1.8551 19 8 2.1985 2.1733 -2.2040 20 6 3.4188 4.1779 -2.4541 21 1 4.0978 4.0803 -3.3012 22 6 4.0474 5.0904 -1.3991 23 6 2.1154 4.7731 -2.9208 24 1 1.1949 4.2220 -2.7966 25 6 2.0980 6.0212 -3.5065 26 7 3.2189 6.6924 -3.6573 27 14 0.4824 6.7587 -4.0857 28 1 -0.4432 6.8908 -2.9320 29 1 0.7330 8.0986 -4.6746 30 1 -0.1268 5.8731 -5.1103 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 2.4575 3.0378 1.7662 35 1 3.9040 3.3100 2.7675 36 1 3.9116 3.7722 1.0489 37 1 5.9568 2.0669 2.3384 38 1 5.9580 0.6367 1.2830 39 1 8.0269 2.7598 1.1789 40 1 8.9309 4.1215 -0.6561 41 1 7.5349 4.6350 -2.6188 42 1 5.2282 3.7868 -2.7414 43 1 3.2627 5.6445 -0.8839 44 1 4.5989 4.4866 -0.6784 45 1 4.7284 5.7904 -1.8833 46 1 3.2066 7.5707 -4.0690 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894150205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:36 Heat of formation + Delta-G solvation = -62.070864 kcal Electronic energy + Delta-G solvation = -31173.804606 eV Core-core repulsion = 27222.822577 eV Total energy + Delta-G solvation = -3950.982028 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.10793 -41.17920 -39.71189 -38.16569 -37.19322 -36.33266 -35.19273 -32.80757 -32.21501 -30.70697 -29.40148 -27.98138 -27.19963 -27.15870 -25.10943 -23.91834 -23.05233 -22.46113 -21.25191 -19.82724 -18.86811 -18.74866 -18.30065 -17.95971 -17.32677 -16.97521 -16.80773 -16.69467 -16.32910 -15.53651 -15.39359 -15.33719 -14.92729 -14.75320 -14.63300 -14.36767 -14.11866 -13.81387 -13.67364 -13.28987 -13.13129 -13.01547 -12.98024 -12.85854 -12.76648 -12.56890 -12.47204 -12.34624 -12.17341 -12.01507 -11.84519 -11.78917 -11.64697 -11.30587 -11.04752 -10.78774 -10.68185 -10.53597 -9.40921 -8.62594 -8.24841 -6.33081 0.42523 0.59338 0.97271 1.31324 1.33790 1.41922 1.53771 1.69971 1.91668 2.36740 2.97248 3.06035 3.37696 3.59910 3.74461 3.86721 3.94765 4.01203 4.18824 4.22689 4.24556 4.28185 4.40527 4.44495 4.52237 4.59753 4.68187 4.71473 4.75960 4.84289 4.87300 4.90021 5.00319 5.04801 5.13249 5.17369 5.28578 5.32294 5.42284 5.43878 5.62505 5.67326 5.71822 5.80054 5.82642 6.02061 6.17255 6.40827 6.68602 6.69998 7.08211 7.32472 8.83070 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009827 B = 0.006798 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.558124 B = 4117.749484 C = 6329.190217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.516 6.516 5 C 0.146 3.854 6 H 0.126 0.874 7 C -0.086 4.086 8 H 0.128 0.872 9 C -0.153 4.153 10 C -0.060 4.060 11 C -0.124 4.124 12 C -0.089 4.089 13 C -0.138 4.138 14 C -0.108 4.108 15 C -0.183 4.183 16 C 0.152 3.848 17 N -0.559 5.559 18 C 0.532 3.468 19 O -0.551 6.551 20 C 0.035 3.965 21 H 0.054 0.946 22 C -0.105 4.105 23 C -0.532 4.532 24 H 0.036 0.964 25 C 0.025 3.975 26 N -0.903 5.903 27 Si 0.954 3.046 28 H -0.280 1.280 29 H -0.267 1.267 30 H -0.276 1.276 31 H 0.142 0.858 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.005 0.995 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.397 -12.240 13.947 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.275 6.275 3 C 0.307 3.693 4 O -0.403 6.403 5 C 0.043 3.957 6 H 0.144 0.856 7 C -0.105 4.105 8 H 0.146 0.854 9 C -0.211 4.211 10 C -0.096 4.096 11 C -0.127 4.127 12 C -0.108 4.108 13 C -0.157 4.157 14 C -0.127 4.127 15 C -0.202 4.202 16 C 0.059 3.941 17 N -0.286 5.286 18 C 0.325 3.675 19 O -0.428 6.428 20 C 0.015 3.985 21 H 0.071 0.929 22 C -0.162 4.162 23 C -0.571 4.571 24 H 0.055 0.945 25 C -0.175 4.175 26 N -0.541 5.541 27 Si 0.779 3.221 28 H -0.206 1.206 29 H -0.191 1.191 30 H -0.201 1.201 31 H 0.160 0.840 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.056 0.944 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.182 0.818 40 H 0.168 0.832 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.024 0.976 44 H 0.089 0.911 45 H 0.073 0.927 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.585 -12.144 13.662 20.639 hybrid contribution -1.888 1.013 -1.259 2.485 sum 7.697 -11.131 12.402 18.356 Atomic orbital electron populations 1.23446 0.74969 1.05592 1.01668 1.86380 1.24807 1.32131 1.84213 1.23464 0.92040 0.81792 0.71976 1.90727 1.67516 1.37331 1.44737 1.21188 0.87054 0.93787 0.93668 0.85629 1.21531 0.98125 0.99189 0.91623 0.85422 1.21932 1.00319 0.96397 1.02415 1.20549 0.90978 1.01007 0.97105 1.19707 0.95258 1.03490 0.94265 1.21214 0.93492 0.96408 0.99640 1.21356 1.00888 0.99737 0.93691 1.21090 0.92441 0.99462 0.99712 1.22119 0.97917 1.00401 0.99789 1.17571 0.82445 0.98038 0.96067 1.45744 1.11072 1.38450 1.33343 1.21800 0.80348 0.88270 0.77065 1.90491 1.31337 1.60643 1.60317 1.19121 0.97274 0.87177 0.94934 0.92898 1.22154 0.98356 0.98525 0.97193 1.21100 0.92837 1.02491 1.40648 0.94544 1.25540 0.99825 0.96737 0.95409 1.70008 1.26913 1.13426 1.43775 0.85690 0.80061 0.77934 0.78429 1.20596 1.19103 1.20148 0.83993 0.91582 0.94483 0.94664 0.89118 0.94357 0.86268 0.87191 0.81821 0.83219 0.85384 0.85554 0.97576 0.91101 0.92673 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.00 10.56 113.37 1.20 2.19 16 2 O -0.36 -11.75 10.56 -51.37 -0.54 -12.30 16 3 C 0.46 17.83 4.75 71.24 0.34 18.17 16 4 O -0.52 -24.54 12.40 29.46 0.37 -24.18 16 5 C 0.15 4.67 2.99 44.31 0.13 4.80 16 6 H 0.13 3.34 8.14 -2.39 -0.02 3.32 16 7 C -0.09 -1.94 2.72 -10.70 -0.03 -1.97 16 8 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 9 C -0.15 -4.43 8.48 71.98 0.61 -3.82 16 10 C -0.06 -0.98 5.22 29.77 0.16 -0.82 16 11 C -0.12 -2.99 5.29 -19.75 -0.10 -3.09 16 12 C -0.09 -1.72 9.66 22.31 0.22 -1.51 16 13 C -0.14 -3.00 10.04 22.26 0.22 -2.78 16 14 C -0.11 -3.18 10.05 22.24 0.22 -2.95 16 15 C -0.18 -6.70 6.00 22.41 0.13 -6.56 16 16 C 0.15 5.15 3.58 38.08 0.14 5.29 16 17 N -0.56 -22.03 2.09 -610.96 -1.28 -23.30 16 18 C 0.53 27.05 5.64 87.66 0.49 27.55 16 19 O -0.55 -31.37 12.91 19.65 0.25 -31.11 16 20 C 0.04 1.92 1.74 -12.28 -0.02 1.90 16 21 H 0.05 3.03 5.79 -2.39 -0.01 3.02 16 22 C -0.11 -5.28 6.61 71.98 0.48 -4.80 16 23 C -0.53 -33.09 8.13 25.60 0.21 -32.88 16 24 H 0.04 2.45 7.05 -2.91 -0.02 2.43 16 25 C 0.03 1.49 5.30 84.66 0.45 1.94 16 26 N -0.90 -52.66 11.97 21.45 0.26 -52.40 16 27 Si 0.95 47.42 29.54 68.60 2.03 49.44 16 28 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 29 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 30 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 31 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 32 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 33 H 0.04 1.23 8.13 -2.38 -0.02 1.21 16 34 H 0.03 1.22 6.24 -2.39 -0.01 1.20 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.36 5.17 -2.39 -0.01 1.35 16 37 H 0.12 1.26 8.11 -2.39 -0.02 1.24 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.16 1.78 8.06 -2.91 -0.02 1.75 16 40 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 42 H 0.13 5.63 3.44 -2.91 -0.01 5.62 16 43 H 0.01 0.29 7.80 -2.39 -0.02 0.27 16 44 H 0.07 3.11 2.48 -2.38 -0.01 3.11 16 45 H 0.05 2.82 7.25 -2.39 -0.02 2.80 16 46 H 0.27 14.68 8.31 -92.70 -0.77 13.91 16 Total: -1.00 -81.70 350.33 6.93 -74.76 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.01 Total: 18.43 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 4.84 Total: 0.66 kcal Atomic # 7 Polarization: -74.69 SS G_CDS: -1.02 Total: -75.71 kcal Atomic # 8 Polarization: -67.66 SS G_CDS: 0.08 Total: -67.59 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.44 kcal Total: -81.70 6.93 -74.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894150205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.693 kcal (2) G-P(sol) polarization free energy of solvation -81.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds