Wall clock time and date at job start Tue Mar 31 2020 17:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99319 * 2 1 4 4 O 1.20818 * 120.00543 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99293 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.84159 * 322.52567 * 5 3 2 7 7 C 1.53436 * 109.79256 * 201.69058 * 5 3 2 8 8 H 1.08992 * 109.57267 * 57.35888 * 7 5 3 9 9 C 1.53004 * 109.57375 * 297.10127 * 7 5 3 10 10 C 1.52855 * 108.84311 * 177.16775 * 7 5 3 11 11 C 1.50594 * 110.50331 * 51.40774 * 10 7 5 12 12 C 1.38506 * 118.93488 * 159.46680 * 11 10 7 13 13 C 1.38112 * 120.30867 * 179.86151 * 12 11 10 14 14 C 1.38304 * 120.15395 * 359.97438 * 13 12 11 15 15 C 1.38037 * 119.90259 * 0.07357 * 14 13 12 16 16 C 1.38692 * 121.52735 * 339.14678 * 11 10 7 17 17 N 1.40178 * 120.74063 * 0.81752 * 16 11 10 18 18 C 1.34777 * 120.55107 * 166.42341 * 17 16 11 19 19 O 1.21286 * 119.99684 * 167.98265 * 18 17 16 20 20 C 1.50700 * 120.00098 * 347.98904 * 18 17 16 21 21 H 1.09000 * 109.47073 * 340.35010 * 20 18 17 22 22 C 1.53003 * 109.47265 * 100.35240 * 20 18 17 23 23 C 1.50701 * 109.46774 * 220.35025 * 20 18 17 24 24 H 1.08000 * 120.00096 * 0.02562 * 23 20 18 25 25 C 1.37881 * 119.99755 * 180.02562 * 23 20 18 26 26 N 1.31509 * 120.00135 * 359.97438 * 25 23 20 27 27 Si 1.86803 * 119.99897 * 180.02562 * 25 23 20 28 28 H 1.48504 * 109.47192 * 359.97438 * 27 25 23 29 29 H 1.48491 * 109.47381 * 120.00055 * 27 25 23 30 30 H 1.48506 * 109.46738 * 239.99904 * 27 25 23 31 31 H 1.09003 * 109.46630 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47331 * 299.99944 * 1 2 3 33 33 H 1.08993 * 109.47499 * 60.00019 * 1 2 3 34 34 H 1.08993 * 109.47132 * 60.00261 * 9 7 5 35 35 H 1.08998 * 109.46653 * 180.02562 * 9 7 5 36 36 H 1.09002 * 109.46809 * 300.00058 * 9 7 5 37 37 H 1.09002 * 109.26852 * 171.67225 * 10 7 5 38 38 H 1.08999 * 109.27136 * 291.13950 * 10 7 5 39 39 H 1.08003 * 119.84269 * 359.87370 * 12 11 10 40 40 H 1.07998 * 119.92481 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.05118 * 180.09827 * 14 13 12 42 42 H 1.08007 * 119.97916 * 179.97438 * 15 14 13 43 43 H 1.08993 * 109.46955 * 188.03602 * 22 20 18 44 44 H 1.08999 * 109.46852 * 308.03523 * 22 20 18 45 45 H 1.08998 * 109.47290 * 68.03537 * 22 20 18 46 46 H 0.97001 * 120.00070 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9786 0.4817 0.6229 7 6 4.0152 2.6417 0.5331 8 1 3.6094 2.7944 1.5331 9 6 3.5119 3.7462 -0.3985 10 6 5.5423 2.6723 0.5898 11 6 6.1278 2.2529 -0.7328 12 6 7.4308 2.6135 -1.0334 13 6 7.9970 2.2415 -2.2370 14 6 7.2653 1.5050 -3.1507 15 6 5.9657 1.1423 -2.8593 16 6 5.3951 1.5116 -1.6478 17 7 4.0710 1.1417 -1.3740 18 6 3.2760 0.6666 -2.3531 19 8 2.2153 0.1483 -2.0750 20 6 3.7050 0.7793 -3.7934 21 1 4.4706 1.5496 -3.8852 22 6 4.2720 -0.5620 -4.2631 23 6 2.5168 1.1479 -4.6440 24 1 1.5481 1.2871 -4.1873 25 6 2.6666 1.3074 -6.0053 26 7 3.8463 1.1384 -6.5614 27 14 1.1940 1.7650 -7.0596 28 1 -0.0092 1.8966 -6.1991 29 1 1.4573 3.0562 -7.7440 30 1 0.9630 0.7052 -8.0739 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 2.4234 3.7148 -0.4444 35 1 3.8321 4.7162 -0.0180 36 1 3.9223 3.5944 -1.3968 37 1 5.8734 3.6838 0.8252 38 1 5.8871 1.9914 1.3680 39 1 8.0069 3.1882 -0.3232 40 1 9.0137 2.5258 -2.4648 41 1 7.7102 1.2136 -4.0907 42 1 5.3931 0.5674 -3.5722 43 1 4.7117 -0.4437 -5.2533 44 1 5.0374 -0.8978 -3.5634 45 1 3.4709 -1.2998 -4.3070 46 1 3.9515 1.2503 -7.5191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894150206.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:40 Heat of formation + Delta-G solvation = -35.329024 kcal Electronic energy + Delta-G solvation = -31043.954857 eV Core-core repulsion = 27094.132441 eV Total energy + Delta-G solvation = -3949.822415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52009 -39.68654 -38.23699 -36.94883 -35.72897 -34.60119 -33.61605 -31.19798 -30.94309 -29.32884 -28.04046 -26.69103 -25.93355 -25.49074 -23.58508 -22.59366 -21.54530 -20.98586 -19.70610 -18.49106 -17.47361 -17.21738 -16.78203 -16.59304 -15.72883 -15.43809 -15.23218 -14.86972 -14.59708 -14.29849 -14.14460 -13.95556 -13.58338 -13.40765 -13.15225 -12.97061 -12.65005 -12.37714 -12.15328 -11.85732 -11.68301 -11.59762 -11.44330 -11.32600 -11.14725 -11.10291 -10.97256 -10.76808 -10.58403 -10.46794 -10.31936 -10.16433 -10.00067 -9.75933 -9.60911 -9.09388 -8.84450 -8.52709 -8.18679 -7.41487 -6.16568 -4.19404 1.65282 1.75722 2.27856 3.06000 3.25306 3.32058 3.33739 3.37551 3.46418 4.14333 4.37145 4.50021 4.81178 4.93574 5.07321 5.11247 5.17404 5.25837 5.39215 5.41838 5.42331 5.55952 5.60065 5.63010 5.71987 5.82211 5.89063 5.92659 5.95880 6.13582 6.17162 6.24766 6.36227 6.41643 6.55198 6.58853 6.62868 6.71261 6.78763 6.95842 7.02892 7.06470 7.26776 7.33734 7.56992 7.76276 7.87181 8.12863 8.13630 8.74082 8.82701 9.44519 10.91379 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009565 B = 0.006769 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.755119 B = 4135.591230 C = 6083.971914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.330 6.330 3 C 0.484 3.516 4 O -0.506 6.506 5 C 0.147 3.853 6 H 0.101 0.899 7 C -0.087 4.087 8 H 0.088 0.912 9 C -0.164 4.164 10 C -0.068 4.068 11 C -0.126 4.126 12 C -0.102 4.102 13 C -0.150 4.150 14 C -0.093 4.093 15 C -0.197 4.197 16 C 0.174 3.826 17 N -0.555 5.555 18 C 0.519 3.481 19 O -0.500 6.500 20 C 0.014 3.986 21 H 0.079 0.921 22 C -0.145 4.145 23 C -0.504 4.504 24 H 0.065 0.935 25 C 0.065 3.935 26 N -0.890 5.890 27 Si 0.900 3.100 28 H -0.272 1.272 29 H -0.283 1.283 30 H -0.282 1.282 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.125 0.875 42 H 0.207 0.793 43 H 0.098 0.902 44 H 0.027 0.973 45 H 0.050 0.950 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 0.622 13.053 14.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.245 6.245 3 C 0.328 3.672 4 O -0.394 6.394 5 C 0.043 3.957 6 H 0.119 0.881 7 C -0.106 4.106 8 H 0.107 0.893 9 C -0.221 4.221 10 C -0.105 4.105 11 C -0.129 4.129 12 C -0.121 4.121 13 C -0.169 4.169 14 C -0.111 4.111 15 C -0.215 4.215 16 C 0.080 3.920 17 N -0.282 5.282 18 C 0.312 3.688 19 O -0.374 6.374 20 C -0.007 4.007 21 H 0.096 0.904 22 C -0.203 4.203 23 C -0.542 4.542 24 H 0.083 0.917 25 C -0.137 4.137 26 N -0.528 5.528 27 Si 0.728 3.272 28 H -0.197 1.197 29 H -0.209 1.209 30 H -0.208 1.208 31 H 0.112 0.888 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.143 0.857 42 H 0.222 0.778 43 H 0.117 0.883 44 H 0.045 0.955 45 H 0.069 0.931 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.119 0.576 13.028 14.009 hybrid contribution -0.798 0.389 -0.572 1.056 sum 4.322 0.965 12.455 13.219 Atomic orbital electron populations 1.23067 0.77013 1.02939 1.01687 1.86521 1.22700 1.32229 1.83036 1.22761 0.90772 0.81940 0.71776 1.90524 1.66740 1.35958 1.46215 1.20965 0.88526 1.00120 0.86081 0.88145 1.21319 0.95701 0.93050 1.00544 0.89342 1.22169 1.04624 0.96085 0.99195 1.20436 0.93467 1.02126 0.94450 1.19350 0.95197 1.01361 0.96957 1.20715 0.93800 1.00430 0.97129 1.20997 0.99971 1.01181 0.94714 1.21024 0.93555 0.97490 0.99062 1.23526 0.96723 1.03639 0.97654 1.17537 0.83099 0.96246 0.95168 1.46216 1.11263 1.63595 1.07165 1.22487 0.83381 0.74268 0.88679 1.90630 1.23488 1.40966 1.82291 1.19719 0.99658 0.96918 0.84368 0.90399 1.21892 0.99142 0.96450 1.02808 1.20966 0.94211 1.47282 0.91767 0.91710 1.24874 0.96262 0.94873 0.97668 1.69848 1.22087 1.49351 1.11546 0.86382 0.82691 0.78065 0.80074 1.19670 1.20859 1.20785 0.88824 0.93036 0.91792 0.89030 0.92953 0.92244 0.89859 0.90720 0.86412 0.86618 0.85725 0.77776 0.88303 0.95456 0.93082 0.92665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.73 10.49 101.05 1.06 1.79 16 2 O -0.33 -6.19 8.27 -47.43 -0.39 -6.58 16 3 C 0.48 9.19 5.17 36.01 0.19 9.38 16 4 O -0.51 -10.27 13.19 -18.74 -0.25 -10.52 16 5 C 0.15 2.47 3.04 -68.62 -0.21 2.27 16 6 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 7 C -0.09 -1.23 2.54 -90.47 -0.23 -1.46 16 8 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 9 C -0.16 -2.68 8.59 37.16 0.32 -2.37 16 10 C -0.07 -0.82 5.22 -28.01 -0.15 -0.96 16 11 C -0.13 -1.86 5.28 -104.41 -0.55 -2.41 16 12 C -0.10 -1.35 9.66 -39.53 -0.38 -1.73 16 13 C -0.15 -2.04 10.04 -39.60 -0.40 -2.43 16 14 C -0.09 -1.47 10.05 -39.63 -0.40 -1.87 16 15 C -0.20 -3.65 6.87 -39.40 -0.27 -3.92 16 16 C 0.17 3.12 5.37 -83.62 -0.45 2.67 16 17 N -0.55 -10.76 2.27 -107.03 -0.24 -11.00 16 18 C 0.52 11.94 6.17 -10.99 -0.07 11.87 16 19 O -0.50 -12.35 12.06 -19.11 -0.23 -12.58 16 20 C 0.01 0.33 1.67 -92.92 -0.15 0.18 16 21 H 0.08 1.94 4.84 -51.93 -0.25 1.69 16 22 C -0.15 -3.29 7.48 37.16 0.28 -3.01 16 23 C -0.50 -13.89 8.31 -34.44 -0.29 -14.17 16 24 H 0.06 1.90 7.39 -52.49 -0.39 1.51 16 25 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 26 N -0.89 -23.82 11.42 55.43 0.63 -23.19 16 27 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 28 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 30 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 31 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 34 H 0.09 1.72 5.18 -51.93 -0.27 1.45 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 1.12 6.41 -51.93 -0.33 0.79 16 37 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 41 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.21 4.19 1.30 -81.63 -0.11 4.09 16 43 H 0.10 2.34 6.33 -51.93 -0.33 2.02 16 44 H 0.03 0.54 6.62 -51.93 -0.34 0.20 16 45 H 0.05 1.19 8.13 -51.93 -0.42 0.77 16 46 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 LS Contribution 353.04 15.07 5.32 5.32 Total: -1.00 -30.73 353.04 -8.20 -38.93 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.22 Total: 7.79 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.79 Total: -4.52 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: 0.39 Total: -34.19 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.87 Total: -29.68 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.73 -8.20 -38.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894150206.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.602 kcal (2) G-P(sol) polarization free energy of solvation -30.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds