Wall clock time and date at job start Tue Mar 31 2020 17:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34234 * 116.99319 * 2 1 4 4 O 1.20818 * 120.00543 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99293 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.84159 * 322.52567 * 5 3 2 7 7 C 1.53436 * 109.79256 * 201.69058 * 5 3 2 8 8 H 1.08992 * 109.57267 * 57.35888 * 7 5 3 9 9 C 1.53004 * 109.57375 * 297.10127 * 7 5 3 10 10 C 1.52855 * 108.84311 * 177.16775 * 7 5 3 11 11 C 1.50594 * 110.50331 * 51.40774 * 10 7 5 12 12 C 1.38506 * 118.93488 * 159.46680 * 11 10 7 13 13 C 1.38112 * 120.30867 * 179.86151 * 12 11 10 14 14 C 1.38304 * 120.15395 * 359.97438 * 13 12 11 15 15 C 1.38037 * 119.90259 * 0.07357 * 14 13 12 16 16 C 1.38692 * 121.52735 * 339.14678 * 11 10 7 17 17 N 1.40178 * 120.74063 * 0.81752 * 16 11 10 18 18 C 1.34777 * 120.55107 * 166.42341 * 17 16 11 19 19 O 1.21286 * 119.99684 * 167.98265 * 18 17 16 20 20 C 1.50700 * 120.00098 * 347.98904 * 18 17 16 21 21 H 1.09000 * 109.47073 * 340.35010 * 20 18 17 22 22 C 1.53003 * 109.47265 * 100.35240 * 20 18 17 23 23 C 1.50701 * 109.46774 * 220.35025 * 20 18 17 24 24 H 1.08000 * 120.00096 * 0.02562 * 23 20 18 25 25 C 1.37881 * 119.99755 * 180.02562 * 23 20 18 26 26 N 1.31509 * 120.00135 * 359.97438 * 25 23 20 27 27 Si 1.86803 * 119.99897 * 180.02562 * 25 23 20 28 28 H 1.48504 * 109.47192 * 359.97438 * 27 25 23 29 29 H 1.48491 * 109.47381 * 120.00055 * 27 25 23 30 30 H 1.48506 * 109.46738 * 239.99904 * 27 25 23 31 31 H 1.09003 * 109.46630 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47331 * 299.99944 * 1 2 3 33 33 H 1.08993 * 109.47499 * 60.00019 * 1 2 3 34 34 H 1.08993 * 109.47132 * 60.00261 * 9 7 5 35 35 H 1.08998 * 109.46653 * 180.02562 * 9 7 5 36 36 H 1.09002 * 109.46809 * 300.00058 * 9 7 5 37 37 H 1.09002 * 109.26852 * 171.67225 * 10 7 5 38 38 H 1.08999 * 109.27136 * 291.13950 * 10 7 5 39 39 H 1.08003 * 119.84269 * 359.87370 * 12 11 10 40 40 H 1.07998 * 119.92481 * 180.02562 * 13 12 11 41 41 H 1.08002 * 120.05118 * 180.09827 * 14 13 12 42 42 H 1.08007 * 119.97916 * 179.97438 * 15 14 13 43 43 H 1.08993 * 109.46955 * 188.03602 * 22 20 18 44 44 H 1.08999 * 109.46852 * 308.03523 * 22 20 18 45 45 H 1.08998 * 109.47290 * 68.03537 * 22 20 18 46 46 H 0.97001 * 120.00070 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9786 0.4817 0.6229 7 6 4.0152 2.6417 0.5331 8 1 3.6094 2.7944 1.5331 9 6 3.5119 3.7462 -0.3985 10 6 5.5423 2.6723 0.5898 11 6 6.1278 2.2529 -0.7328 12 6 7.4308 2.6135 -1.0334 13 6 7.9970 2.2415 -2.2370 14 6 7.2653 1.5050 -3.1507 15 6 5.9657 1.1423 -2.8593 16 6 5.3951 1.5116 -1.6478 17 7 4.0710 1.1417 -1.3740 18 6 3.2760 0.6666 -2.3531 19 8 2.2153 0.1483 -2.0750 20 6 3.7050 0.7793 -3.7934 21 1 4.4706 1.5496 -3.8852 22 6 4.2720 -0.5620 -4.2631 23 6 2.5168 1.1479 -4.6440 24 1 1.5481 1.2871 -4.1873 25 6 2.6666 1.3074 -6.0053 26 7 3.8463 1.1384 -6.5614 27 14 1.1940 1.7650 -7.0596 28 1 -0.0092 1.8966 -6.1991 29 1 1.4573 3.0562 -7.7440 30 1 0.9630 0.7052 -8.0739 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 2.4234 3.7148 -0.4444 35 1 3.8321 4.7162 -0.0180 36 1 3.9223 3.5944 -1.3968 37 1 5.8734 3.6838 0.8252 38 1 5.8871 1.9914 1.3680 39 1 8.0069 3.1882 -0.3232 40 1 9.0137 2.5258 -2.4648 41 1 7.7102 1.2136 -4.0907 42 1 5.3931 0.5674 -3.5722 43 1 4.7117 -0.4437 -5.2533 44 1 5.0374 -0.8978 -3.5634 45 1 3.4709 -1.2998 -4.3070 46 1 3.9515 1.2503 -7.5191 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894150206.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:40 Heat of formation + Delta-G solvation = -51.012576 kcal Electronic energy + Delta-G solvation = -31044.634946 eV Core-core repulsion = 27094.132441 eV Total energy + Delta-G solvation = -3950.502505 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.92727 -41.09782 -39.75023 -38.25168 -37.18204 -36.28753 -35.18716 -33.01056 -32.13543 -30.70649 -29.35742 -27.96541 -27.51110 -27.14637 -25.13829 -23.93374 -22.96819 -22.35066 -21.20432 -19.75138 -18.94330 -18.76886 -18.45885 -18.09728 -17.20840 -16.89291 -16.77087 -16.51809 -16.12506 -15.49623 -15.43418 -15.30866 -15.08270 -14.88639 -14.54224 -14.39081 -14.02319 -13.73187 -13.59623 -13.25183 -13.06988 -13.02583 -12.96361 -12.84072 -12.78135 -12.66520 -12.57388 -12.37171 -12.26446 -12.08029 -11.76295 -11.67715 -11.48691 -11.14668 -10.99348 -10.91626 -10.67717 -10.41070 -9.43031 -8.74084 -8.24137 -6.33888 0.42643 0.57529 0.83684 1.33044 1.35184 1.46749 1.68747 1.75789 1.97720 2.37555 2.96054 3.06356 3.28421 3.66967 3.76071 3.87380 3.90724 4.01773 4.16230 4.23526 4.28383 4.32246 4.37814 4.40671 4.53675 4.62632 4.66939 4.70544 4.79047 4.81132 4.85690 4.91237 4.98355 5.05160 5.12423 5.16134 5.25114 5.30114 5.36447 5.58231 5.63667 5.65989 5.73702 5.78718 5.82444 6.00915 6.14983 6.40242 6.65739 6.70656 7.05919 7.32270 8.82385 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009565 B = 0.006769 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2926.755119 B = 4135.591230 C = 6083.971914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.344 6.344 3 C 0.476 3.524 4 O -0.528 6.528 5 C 0.140 3.860 6 H 0.127 0.873 7 C -0.081 4.081 8 H 0.118 0.882 9 C -0.159 4.159 10 C -0.063 4.063 11 C -0.121 4.121 12 C -0.094 4.094 13 C -0.139 4.139 14 C -0.107 4.107 15 C -0.227 4.227 16 C 0.141 3.859 17 N -0.551 5.551 18 C 0.513 3.487 19 O -0.533 6.533 20 C 0.017 3.983 21 H 0.072 0.928 22 C -0.125 4.125 23 C -0.532 4.532 24 H 0.033 0.967 25 C 0.030 3.970 26 N -0.900 5.900 27 Si 0.952 3.048 28 H -0.285 1.285 29 H -0.271 1.271 30 H -0.270 1.270 31 H 0.122 0.878 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.025 0.975 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.162 0.838 40 H 0.150 0.850 41 H 0.129 0.871 42 H 0.177 0.823 43 H 0.084 0.916 44 H 0.050 0.950 45 H 0.030 0.970 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.611 1.868 15.390 17.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.258 6.258 3 C 0.321 3.679 4 O -0.418 6.418 5 C 0.036 3.964 6 H 0.145 0.855 7 C -0.100 4.100 8 H 0.136 0.864 9 C -0.216 4.216 10 C -0.099 4.099 11 C -0.123 4.123 12 C -0.112 4.112 13 C -0.158 4.158 14 C -0.125 4.125 15 C -0.245 4.245 16 C 0.047 3.953 17 N -0.277 5.277 18 C 0.306 3.694 19 O -0.410 6.410 20 C -0.004 4.004 21 H 0.089 0.911 22 C -0.183 4.183 23 C -0.570 4.570 24 H 0.051 0.949 25 C -0.171 4.171 26 N -0.538 5.538 27 Si 0.778 3.222 28 H -0.210 1.210 29 H -0.196 1.196 30 H -0.195 1.195 31 H 0.140 0.860 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.147 0.853 42 H 0.193 0.807 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.778 1.830 15.372 17.325 hybrid contribution -1.538 0.050 -1.279 2.001 sum 6.240 1.880 14.093 15.527 Atomic orbital electron populations 1.23262 0.75778 1.04741 1.01244 1.86503 1.24163 1.32455 1.82726 1.23341 0.91934 0.81628 0.71026 1.90514 1.67559 1.36511 1.47184 1.21412 0.86969 1.02997 0.84977 0.85502 1.21420 0.97645 0.90061 1.00868 0.86414 1.22077 1.02502 0.98723 0.98323 1.20569 0.91124 1.04708 0.93539 1.19777 0.95605 0.99580 0.97380 1.21214 0.93141 0.99377 0.97456 1.21404 1.01108 0.99181 0.94118 1.21190 0.92895 0.98278 1.00154 1.23304 0.98078 1.05111 0.98056 1.17819 0.82604 0.98537 0.96291 1.45965 1.11612 1.62644 1.07512 1.22115 0.83433 0.74779 0.89120 1.90599 1.24680 1.42754 1.82942 1.19595 0.98083 0.97189 0.85506 0.91103 1.21662 0.98737 0.95338 1.02551 1.21065 0.94179 1.48761 0.93003 0.94866 1.25465 0.98601 0.94680 0.98307 1.69909 1.22906 1.48980 1.11968 0.85602 0.79521 0.78525 0.78600 1.21027 1.19647 1.19472 0.86006 0.90812 0.94795 0.92108 0.90145 0.95566 0.86794 0.87377 0.82075 0.83263 0.85267 0.80654 0.89722 0.93135 0.95053 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.38 10.49 113.37 1.19 2.57 16 2 O -0.34 -13.21 8.27 -43.65 -0.36 -13.57 16 3 C 0.48 18.39 5.17 71.24 0.37 18.76 16 4 O -0.53 -22.08 13.19 21.99 0.29 -21.79 16 5 C 0.14 4.56 3.04 44.31 0.13 4.69 16 6 H 0.13 3.41 8.14 -2.39 -0.02 3.39 16 7 C -0.08 -2.05 2.54 -10.69 -0.03 -2.08 16 8 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 9 C -0.16 -5.06 8.59 71.98 0.62 -4.44 16 10 C -0.06 -1.19 5.22 29.77 0.16 -1.03 16 11 C -0.12 -3.15 5.28 -19.73 -0.10 -3.26 16 12 C -0.09 -2.00 9.66 22.30 0.22 -1.79 16 13 C -0.14 -3.27 10.04 22.26 0.22 -3.05 16 14 C -0.11 -3.27 10.05 22.24 0.22 -3.04 16 15 C -0.23 -8.51 6.87 22.38 0.15 -8.35 16 16 C 0.14 4.95 5.37 38.08 0.20 5.16 16 17 N -0.55 -21.66 2.27 -610.93 -1.38 -23.05 16 18 C 0.51 24.89 6.17 87.66 0.54 25.43 16 19 O -0.53 -27.99 12.06 20.53 0.25 -27.74 16 20 C 0.02 0.86 1.67 -12.28 -0.02 0.84 16 21 H 0.07 3.76 4.84 -2.39 -0.01 3.75 16 22 C -0.13 -6.00 7.48 71.98 0.54 -5.46 16 23 C -0.53 -31.16 8.31 25.60 0.21 -30.95 16 24 H 0.03 2.10 7.39 -2.91 -0.02 2.08 16 25 C 0.03 1.69 5.30 84.66 0.45 2.14 16 26 N -0.90 -49.51 11.42 21.45 0.24 -49.26 16 27 Si 0.95 45.15 29.54 68.60 2.03 47.18 16 28 H -0.28 -14.00 7.11 99.48 0.71 -13.30 16 29 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 30 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 31 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 32 H 0.07 1.98 8.13 -2.39 -0.02 1.96 16 33 H 0.03 1.26 8.13 -2.39 -0.02 1.24 16 34 H 0.06 2.32 5.18 -2.39 -0.01 2.31 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.03 0.98 6.41 -2.39 -0.02 0.96 16 37 H 0.11 1.57 8.11 -2.39 -0.02 1.55 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 40 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 41 H 0.13 3.67 8.06 -2.91 -0.02 3.65 16 42 H 0.18 7.54 1.30 -30.29 -0.04 7.50 16 43 H 0.08 4.23 6.33 -2.39 -0.02 4.22 16 44 H 0.05 2.12 6.62 -2.39 -0.02 2.10 16 45 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 46 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -72.81 353.04 7.11 -65.70 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.97 Total: 26.40 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 5.07 Total: -3.86 kcal Atomic # 7 Polarization: -71.17 SS G_CDS: -1.14 Total: -72.31 kcal Atomic # 8 Polarization: -63.28 SS G_CDS: 0.18 Total: -63.10 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -72.81 7.11 -65.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894150206.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.690 kcal (2) G-P(sol) polarization free energy of solvation -72.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds