Wall clock time and date at job start Tue Mar 31 2020 17:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46549 * 142.83671 * 3 2 1 5 5 C 1.36933 * 120.00354 * 263.32739 * 4 3 2 6 6 H 1.07998 * 120.00512 * 213.89391 * 5 4 3 7 7 C 1.38815 * 119.99743 * 33.89011 * 5 4 3 8 8 N 1.31613 * 120.00118 * 5.39391 * 7 5 4 9 9 Si 1.86803 * 119.99996 * 185.39124 * 7 5 4 10 10 H 1.48504 * 109.46921 * 60.00127 * 9 7 5 11 11 H 1.48496 * 109.47150 * 179.97438 * 9 7 5 12 12 H 1.48489 * 109.47416 * 300.00278 * 9 7 5 13 13 C 1.46500 * 119.99739 * 83.33401 * 4 3 2 14 14 C 1.50698 * 109.47088 * 269.99463 * 13 4 3 15 15 C 1.38271 * 119.92578 * 270.02393 * 14 13 4 16 16 C 1.38221 * 120.15184 * 179.71923 * 15 14 13 17 17 C 1.38586 * 119.99988 * 0.51388 * 16 15 14 18 18 O 1.35990 * 120.07665 * 179.76536 * 17 16 15 19 19 C 1.34240 * 117.00309 * 260.21941 * 18 17 16 20 20 O 1.20830 * 119.99619 * 5.08315 * 19 18 17 21 21 C 1.50693 * 120.00211 * 185.08093 * 19 18 17 22 22 C 1.52999 * 109.47460 * 179.97438 * 21 19 18 23 23 C 1.39166 * 119.84734 * 359.48496 * 17 16 15 24 24 O 1.35965 * 120.07555 * 180.23158 * 23 17 16 25 25 C 1.42908 * 117.00274 * 180.02562 * 24 23 17 26 26 C 1.52993 * 109.47224 * 180.02562 * 25 24 23 27 27 C 1.38224 * 119.92725 * 89.99890 * 14 13 4 28 28 H 4.40639 * 5.51481 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47253 * 22.84134 * 3 2 1 30 30 H 1.08998 * 109.46896 * 262.83326 * 3 2 1 31 31 H 0.97005 * 120.00059 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47078 * 149.99610 * 13 4 3 33 33 H 1.08997 * 109.47310 * 29.99443 * 13 4 3 34 34 H 1.08004 * 119.92172 * 0.02562 * 15 14 13 35 35 H 1.08008 * 120.00116 * 180.24747 * 16 15 14 36 36 H 1.08998 * 109.47483 * 300.00282 * 21 19 18 37 37 H 1.09004 * 109.47242 * 59.99735 * 21 19 18 38 38 H 1.08994 * 109.47513 * 180.02562 * 22 21 19 39 39 H 1.08998 * 109.47158 * 300.00672 * 22 21 19 40 40 H 1.09000 * 109.46497 * 59.99925 * 22 21 19 41 41 H 1.09006 * 109.46688 * 300.00092 * 25 24 23 42 42 H 1.08996 * 109.47016 * 59.99930 * 25 24 23 43 43 H 1.09006 * 109.47027 * 299.99473 * 26 25 24 44 44 H 1.09001 * 109.47767 * 59.99445 * 26 25 24 45 45 H 1.08998 * 109.47457 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.99531 * 0.05106 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.1017 -0.8344 5 6 3.4920 0.8682 -2.1353 6 1 4.3029 1.4255 -2.5805 7 6 2.8128 -0.0849 -2.8818 8 7 1.7583 -0.6882 -2.3758 9 14 3.3956 -0.5111 -4.6047 10 1 4.7865 -1.0279 -4.5430 11 1 2.5073 -1.5500 -5.1849 12 1 3.3569 0.7053 -5.4554 13 6 3.2384 2.4524 -0.2770 14 6 1.9437 3.1901 -0.5015 15 6 1.7622 3.9294 -1.6558 16 6 0.5743 4.6032 -1.8691 17 6 -0.4341 4.5474 -0.9201 18 8 -1.6016 5.2135 -1.1263 19 6 -1.7461 6.3960 -0.5075 20 8 -0.8266 6.8658 0.1200 21 6 -3.0551 7.1375 -0.5954 22 6 -2.9542 8.4455 0.1918 23 6 -0.2515 3.8032 0.2416 24 8 -1.2396 3.7414 1.1736 25 6 -0.9819 2.9592 2.3415 26 6 -2.1992 3.0083 3.2669 27 6 0.9400 3.1258 0.4467 28 1 -1.0502 -0.0004 0.0000 29 1 3.0099 -0.9463 -0.3989 30 1 3.0093 0.1290 1.0196 31 1 1.2835 -1.3540 -2.8976 32 1 4.0511 2.9867 -0.7692 33 1 3.4401 2.3896 0.7923 34 1 2.5485 3.9765 -2.3946 35 1 0.4336 5.1767 -2.7735 36 1 -3.2787 7.3575 -1.6392 37 1 -3.8505 6.5216 -0.1756 38 1 -3.9011 8.9816 0.1286 39 1 -2.7308 8.2251 1.2357 40 1 -2.1588 9.0615 -0.2277 41 1 -0.7878 1.9265 2.0514 42 1 -0.1125 3.3598 2.8626 43 1 -2.3937 4.0409 3.5570 44 1 -3.0685 2.6074 2.7456 45 1 -2.0029 2.4113 4.1575 46 1 1.0845 2.5480 1.3476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897163821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:56 Heat of formation + Delta-G solvation = -12.452496 kcal Electronic energy + Delta-G solvation = -29255.668334 eV Core-core repulsion = 25306.837920 eV Total energy + Delta-G solvation = -3948.830414 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.02709 -39.33024 -37.51606 -36.82152 -35.49027 -33.06873 -31.95663 -31.58304 -31.41164 -29.96089 -28.95189 -26.44023 -25.87662 -24.82367 -23.77663 -22.29256 -21.40835 -20.97296 -20.16457 -18.13901 -17.41192 -17.21670 -16.75345 -16.61537 -16.39354 -15.80642 -15.33006 -14.99376 -14.34759 -14.10816 -13.78723 -13.76673 -13.57363 -13.43486 -13.08468 -12.99233 -12.75820 -12.59782 -12.50754 -11.94589 -11.76661 -11.68797 -11.52740 -11.43599 -11.37430 -11.17367 -10.97594 -10.87088 -10.67256 -10.47137 -10.37969 -10.33760 -10.25615 -10.08456 -8.99390 -8.79331 -8.42368 -8.10395 -7.61092 -6.87476 -5.82773 -3.43083 1.62074 1.97796 2.34942 3.06389 3.33453 3.39152 3.39705 3.45832 4.15975 4.35800 4.40401 4.52924 4.68761 4.88221 4.93620 5.03463 5.06749 5.27141 5.33305 5.36224 5.36814 5.49157 5.55597 5.61676 5.69615 5.71453 5.78627 5.86400 5.88165 5.93377 5.98343 6.02676 6.03602 6.18647 6.34154 6.52677 6.66050 6.70873 6.78058 6.93090 7.12059 7.22251 7.31372 7.44674 7.69236 7.71136 8.16048 8.32207 9.05434 9.27724 9.65590 10.19124 11.16587 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003982 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.139351 B = 7029.846516 C = 8026.514391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.088 4.088 3 C 0.271 3.729 4 N -0.571 5.571 5 C -0.274 4.274 6 H 0.071 0.929 7 C 0.019 3.981 8 N -0.877 5.877 9 Si 0.903 3.097 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.281 1.281 13 C 0.174 3.826 14 C -0.032 4.032 15 C -0.123 4.123 16 C -0.085 4.085 17 C 0.026 3.974 18 O -0.282 6.282 19 C 0.451 3.549 20 O -0.496 6.496 21 C -0.115 4.115 22 C -0.141 4.141 23 C 0.128 3.872 24 O -0.317 6.317 25 C 0.054 3.946 26 C -0.148 4.148 27 C -0.176 4.176 28 H 0.183 0.817 29 H 0.088 0.912 30 H 0.035 0.965 31 H 0.257 0.743 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.557 10.935 7.738 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 C -0.091 4.091 3 C 0.146 3.854 4 N -0.289 5.289 5 C -0.404 4.404 6 H 0.088 0.912 7 C -0.183 4.183 8 N -0.517 5.517 9 Si 0.732 3.268 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.047 3.953 14 C -0.035 4.035 15 C -0.142 4.142 16 C -0.104 4.104 17 C -0.016 4.016 18 O -0.197 6.197 19 C 0.295 3.705 20 O -0.382 6.382 21 C -0.152 4.152 22 C -0.198 4.198 23 C 0.082 3.918 24 O -0.231 6.231 25 C -0.021 4.021 26 C -0.205 4.205 27 C -0.196 4.196 28 H 0.200 0.800 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.475 10.972 7.843 15.419 hybrid contribution -0.225 -0.595 -1.215 1.372 sum -7.700 10.377 6.627 14.522 Atomic orbital electron populations 1.23964 0.95076 1.04591 1.08024 1.23953 0.94981 0.96477 0.93733 1.17708 0.83195 0.93060 0.91433 1.44100 1.74014 1.00165 1.10600 1.19085 1.11830 1.21556 0.87893 0.91167 1.25389 0.95163 1.00076 0.97673 1.69928 1.18023 1.27269 1.36498 0.86386 0.77920 0.77929 0.84553 1.20775 1.21633 1.20727 1.20163 0.91480 0.86437 0.97173 1.20948 0.98849 0.91372 0.92371 1.20748 0.96876 0.98654 0.97917 1.20860 0.91656 0.99974 0.97890 1.17554 0.87765 1.00843 0.95402 1.84647 1.37093 1.32073 1.65897 1.24223 0.90600 0.79825 0.75894 1.90649 1.42065 1.66902 1.38545 1.21330 0.92802 0.96946 1.04145 1.21623 1.02277 0.95125 1.00795 1.18976 0.88152 0.96555 0.88090 1.85990 1.39394 1.68387 1.29354 1.22762 0.98826 0.95671 0.84882 1.21742 0.97628 1.02723 0.98418 1.20851 0.93181 1.03540 1.02050 0.79967 0.89432 0.94739 0.93206 0.91974 0.93219 0.85482 0.85696 0.87837 0.87713 0.91361 0.91771 0.91779 0.91297 0.92435 0.91996 0.91655 0.90533 0.85801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.74 18.80 29.55 0.56 -6.19 16 2 C -0.09 -2.07 9.70 -37.12 -0.36 -2.43 16 3 C 0.27 6.13 5.45 -6.82 -0.04 6.09 16 4 N -0.57 -13.28 2.46 -177.95 -0.44 -13.71 16 5 C -0.27 -7.00 9.54 -15.06 -0.14 -7.14 16 6 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 7 C 0.02 0.49 5.16 -17.43 -0.09 0.40 16 8 N -0.88 -24.20 9.29 55.49 0.52 -23.69 16 9 Si 0.90 21.00 29.56 -169.99 -5.02 15.97 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 C 0.17 3.45 5.81 -5.19 -0.03 3.42 16 14 C -0.03 -0.64 5.20 -104.62 -0.54 -1.19 16 15 C -0.12 -2.45 9.69 -39.58 -0.38 -2.84 16 16 C -0.09 -1.64 9.98 -39.46 -0.39 -2.04 16 17 C 0.03 0.52 4.98 -39.11 -0.19 0.33 16 18 O -0.28 -5.08 9.82 -29.08 -0.29 -5.36 16 19 C 0.45 7.09 7.78 36.00 0.28 7.37 16 20 O -0.50 -9.21 15.71 -18.75 -0.29 -9.50 16 21 C -0.11 -1.16 6.53 -27.89 -0.18 -1.34 16 22 C -0.14 -1.27 9.20 37.16 0.34 -0.93 16 23 C 0.13 2.54 6.63 -39.11 -0.26 2.28 16 24 O -0.32 -5.74 9.84 -34.13 -0.34 -6.08 16 25 C 0.05 0.78 5.46 37.15 0.20 0.98 16 26 C -0.15 -1.64 10.28 37.15 0.38 -1.25 16 27 C -0.18 -3.47 7.18 -39.46 -0.28 -3.75 16 28 H 0.18 3.73 7.80 -54.08 -0.42 3.31 16 29 H 0.09 2.14 7.12 -51.93 -0.37 1.78 16 30 H 0.03 0.68 7.99 -51.93 -0.41 0.26 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.06 1.17 7.98 -51.93 -0.41 0.75 16 33 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 34 H 0.13 2.41 8.06 -52.48 -0.42 1.99 16 35 H 0.13 2.09 8.06 -52.48 -0.42 1.67 16 36 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.07 1.05 7.66 -51.93 -0.40 0.65 16 42 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.12 2.29 6.27 -52.49 -0.33 1.96 16 LS Contribution 393.08 15.07 5.92 5.92 Total: -1.00 -31.93 393.08 -8.00 -39.94 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.93 Total: 4.74 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -1.14 Total: -8.23 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.08 Total: -37.40 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.92 Total: -20.95 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.93 -8.00 -39.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.487 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds