Wall clock time and date at job start Tue Mar 31 2020 17:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46549 * 142.83671 * 3 2 1 5 5 C 1.36933 * 120.00354 * 263.32739 * 4 3 2 6 6 H 1.07998 * 120.00512 * 213.89391 * 5 4 3 7 7 C 1.38815 * 119.99743 * 33.89011 * 5 4 3 8 8 N 1.31613 * 120.00118 * 5.39391 * 7 5 4 9 9 Si 1.86803 * 119.99996 * 185.39124 * 7 5 4 10 10 H 1.48504 * 109.46921 * 60.00127 * 9 7 5 11 11 H 1.48496 * 109.47150 * 179.97438 * 9 7 5 12 12 H 1.48489 * 109.47416 * 300.00278 * 9 7 5 13 13 C 1.46500 * 119.99739 * 83.33401 * 4 3 2 14 14 C 1.50698 * 109.47088 * 269.99463 * 13 4 3 15 15 C 1.38271 * 119.92578 * 270.02393 * 14 13 4 16 16 C 1.38221 * 120.15184 * 179.71923 * 15 14 13 17 17 C 1.38586 * 119.99988 * 0.51388 * 16 15 14 18 18 O 1.35990 * 120.07665 * 179.76536 * 17 16 15 19 19 C 1.34240 * 117.00309 * 260.21941 * 18 17 16 20 20 O 1.20830 * 119.99619 * 5.08315 * 19 18 17 21 21 C 1.50693 * 120.00211 * 185.08093 * 19 18 17 22 22 C 1.52999 * 109.47460 * 179.97438 * 21 19 18 23 23 C 1.39166 * 119.84734 * 359.48496 * 17 16 15 24 24 O 1.35965 * 120.07555 * 180.23158 * 23 17 16 25 25 C 1.42908 * 117.00274 * 180.02562 * 24 23 17 26 26 C 1.52993 * 109.47224 * 180.02562 * 25 24 23 27 27 C 1.38224 * 119.92725 * 89.99890 * 14 13 4 28 28 H 4.40639 * 5.51481 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47253 * 22.84134 * 3 2 1 30 30 H 1.08998 * 109.46896 * 262.83326 * 3 2 1 31 31 H 0.97005 * 120.00059 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47078 * 149.99610 * 13 4 3 33 33 H 1.08997 * 109.47310 * 29.99443 * 13 4 3 34 34 H 1.08004 * 119.92172 * 0.02562 * 15 14 13 35 35 H 1.08008 * 120.00116 * 180.24747 * 16 15 14 36 36 H 1.08998 * 109.47483 * 300.00282 * 21 19 18 37 37 H 1.09004 * 109.47242 * 59.99735 * 21 19 18 38 38 H 1.08994 * 109.47513 * 180.02562 * 22 21 19 39 39 H 1.08998 * 109.47158 * 300.00672 * 22 21 19 40 40 H 1.09000 * 109.46497 * 59.99925 * 22 21 19 41 41 H 1.09006 * 109.46688 * 300.00092 * 25 24 23 42 42 H 1.08996 * 109.47016 * 59.99930 * 25 24 23 43 43 H 1.09006 * 109.47027 * 299.99473 * 26 25 24 44 44 H 1.09001 * 109.47767 * 59.99445 * 26 25 24 45 45 H 1.08998 * 109.47457 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.99531 * 0.05106 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.1017 -0.8344 5 6 3.4920 0.8682 -2.1353 6 1 4.3029 1.4255 -2.5805 7 6 2.8128 -0.0849 -2.8818 8 7 1.7583 -0.6882 -2.3758 9 14 3.3956 -0.5111 -4.6047 10 1 4.7865 -1.0279 -4.5430 11 1 2.5073 -1.5500 -5.1849 12 1 3.3569 0.7053 -5.4554 13 6 3.2384 2.4524 -0.2770 14 6 1.9437 3.1901 -0.5015 15 6 1.7622 3.9294 -1.6558 16 6 0.5743 4.6032 -1.8691 17 6 -0.4341 4.5474 -0.9201 18 8 -1.6016 5.2135 -1.1263 19 6 -1.7461 6.3960 -0.5075 20 8 -0.8266 6.8658 0.1200 21 6 -3.0551 7.1375 -0.5954 22 6 -2.9542 8.4455 0.1918 23 6 -0.2515 3.8032 0.2416 24 8 -1.2396 3.7414 1.1736 25 6 -0.9819 2.9592 2.3415 26 6 -2.1992 3.0083 3.2669 27 6 0.9400 3.1258 0.4467 28 1 -1.0502 -0.0004 0.0000 29 1 3.0099 -0.9463 -0.3989 30 1 3.0093 0.1290 1.0196 31 1 1.2835 -1.3540 -2.8976 32 1 4.0511 2.9867 -0.7692 33 1 3.4401 2.3896 0.7923 34 1 2.5485 3.9765 -2.3946 35 1 0.4336 5.1767 -2.7735 36 1 -3.2787 7.3575 -1.6392 37 1 -3.8505 6.5216 -0.1756 38 1 -3.9011 8.9816 0.1286 39 1 -2.7308 8.2251 1.2357 40 1 -2.1588 9.0615 -0.2277 41 1 -0.7878 1.9265 2.0514 42 1 -0.1125 3.3598 2.8626 43 1 -2.3937 4.0409 3.5570 44 1 -3.0685 2.6074 2.7456 45 1 -2.0029 2.4113 4.1575 46 1 1.0845 2.5480 1.3476 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897163821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:04:55 Heat of formation + Delta-G solvation = -27.263688 kcal Electronic energy + Delta-G solvation = -29256.310596 eV Core-core repulsion = 25306.837920 eV Total energy + Delta-G solvation = -3949.472676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.38004 -40.70177 -38.96305 -38.25102 -37.14140 -34.00363 -33.58338 -33.27774 -32.72673 -31.57051 -30.41530 -28.01789 -27.59275 -26.00845 -25.04895 -23.85546 -22.72325 -22.41727 -21.51650 -19.48012 -19.23908 -18.53276 -18.28425 -18.04878 -17.88252 -17.04382 -16.88741 -16.48391 -15.78410 -15.55048 -15.46561 -15.33520 -14.90038 -14.83944 -14.51117 -14.31999 -14.02758 -13.45519 -13.43504 -13.37819 -13.32095 -13.06294 -12.90501 -12.77904 -12.71407 -12.61923 -12.38504 -12.28704 -12.19343 -12.13331 -11.92242 -11.74064 -11.68265 -11.61066 -10.83420 -10.61820 -10.24684 -9.65951 -9.11174 -8.72962 -7.79561 -5.40778 0.13755 0.45885 1.13265 1.48934 1.49854 1.55069 1.83181 2.17572 2.41441 2.56415 2.68310 2.78472 3.36805 3.59057 3.79741 3.93477 3.97705 3.99596 4.07678 4.13725 4.16552 4.19390 4.23396 4.33759 4.41010 4.51041 4.54130 4.68705 4.83438 4.86208 4.89324 4.92789 4.96753 4.98370 5.02752 5.13905 5.21618 5.25325 5.27253 5.29675 5.56427 5.68778 5.70051 5.74917 5.80611 6.31474 6.39499 6.84215 7.13787 7.48652 7.79079 8.28774 9.17306 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014066 B = 0.003982 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.139351 B = 7029.846516 C = 8026.514391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.103 4.103 3 C 0.271 3.729 4 N -0.582 5.582 5 C -0.274 4.274 6 H 0.073 0.927 7 C -0.028 4.028 8 N -0.902 5.902 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.302 1.302 12 H -0.281 1.281 13 C 0.175 3.825 14 C -0.046 4.046 15 C -0.136 4.136 16 C -0.094 4.094 17 C 0.014 3.986 18 O -0.290 6.290 19 C 0.446 3.554 20 O -0.530 6.530 21 C -0.108 4.108 22 C -0.138 4.138 23 C 0.116 3.884 24 O -0.326 6.326 25 C 0.046 3.954 26 C -0.141 4.141 27 C -0.177 4.177 28 H 0.199 0.801 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.245 0.755 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.132 0.868 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.102 0.898 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 12.163 8.318 17.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.106 4.106 3 C 0.146 3.854 4 N -0.301 5.301 5 C -0.404 4.404 6 H 0.091 0.909 7 C -0.227 4.227 8 N -0.544 5.544 9 Si 0.786 3.214 10 H -0.200 1.200 11 H -0.228 1.228 12 H -0.207 1.207 13 C 0.049 3.951 14 C -0.049 4.049 15 C -0.155 4.155 16 C -0.113 4.113 17 C -0.029 4.029 18 O -0.205 6.205 19 C 0.292 3.708 20 O -0.418 6.418 21 C -0.145 4.145 22 C -0.195 4.195 23 C 0.070 3.930 24 O -0.241 6.241 25 C -0.029 4.029 26 C -0.198 4.198 27 C -0.197 4.197 28 H 0.216 0.784 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.150 0.850 37 H 0.144 0.856 38 H 0.121 0.879 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.121 0.879 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.527 12.228 8.438 17.130 hybrid contribution 0.064 -0.865 -1.300 1.562 sum -8.463 11.363 7.138 15.865 Atomic orbital electron populations 1.24428 0.95745 1.04200 1.07761 1.24259 0.95544 0.96842 0.94004 1.17720 0.82948 0.92012 0.92749 1.44168 1.74208 1.01699 1.10029 1.19335 1.11495 1.20836 0.88730 0.90935 1.25945 0.95619 1.00706 1.00409 1.70104 1.19282 1.27990 1.37058 0.85522 0.77441 0.77153 0.81282 1.20028 1.22818 1.20661 1.20249 0.91564 0.84813 0.98446 1.21032 0.98994 0.92149 0.92772 1.20922 0.97455 0.99032 0.98108 1.21121 0.91469 1.00024 0.98662 1.17833 0.88407 1.01087 0.95534 1.84650 1.36259 1.33105 1.66502 1.25407 0.92098 0.78831 0.74511 1.90630 1.43715 1.67414 1.40041 1.21584 0.89815 0.96766 1.06294 1.21651 1.03714 0.94651 0.99520 1.19157 0.88607 0.96503 0.88686 1.85991 1.39104 1.68928 1.30055 1.23052 1.00937 0.94685 0.84210 1.21764 0.95967 1.03589 0.98444 1.20942 0.93084 1.03419 1.02253 0.78419 0.91910 0.91560 0.94470 0.91118 0.90924 0.85053 0.83789 0.85030 0.85619 0.87944 0.93249 0.92875 0.92212 0.91828 0.91551 0.91663 0.87897 0.85018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.65 18.80 74.32 1.40 -12.25 16 2 C -0.10 -4.83 9.70 31.13 0.30 -4.53 16 3 C 0.27 12.16 5.45 84.57 0.46 12.62 16 4 N -0.58 -26.79 2.46 -716.90 -1.76 -28.56 16 5 C -0.27 -13.92 9.54 84.03 0.80 -13.12 16 6 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 7 C -0.03 -1.50 5.16 84.86 0.44 -1.06 16 8 N -0.90 -50.47 9.29 21.65 0.20 -50.27 16 9 Si 0.96 43.53 29.56 68.60 2.03 45.56 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 11 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 13 C 0.17 6.77 5.81 85.63 0.50 7.27 16 14 C -0.05 -1.85 5.20 -19.86 -0.10 -1.96 16 15 C -0.14 -5.43 9.69 22.27 0.22 -5.21 16 16 C -0.09 -3.63 9.98 22.35 0.22 -3.41 16 17 C 0.01 0.54 4.98 22.58 0.11 0.65 16 18 O -0.29 -10.24 9.82 9.12 0.09 -10.15 16 19 C 0.45 13.56 7.78 71.23 0.55 14.11 16 20 O -0.53 -19.59 15.71 21.95 0.34 -19.25 16 21 C -0.11 -1.89 6.53 29.85 0.19 -1.70 16 22 C -0.14 -2.18 9.20 71.98 0.66 -1.52 16 23 C 0.12 4.60 6.63 22.58 0.15 4.75 16 24 O -0.33 -11.63 9.84 -79.29 -0.78 -12.41 16 25 C 0.05 1.27 5.46 71.98 0.39 1.67 16 26 C -0.14 -2.82 10.28 71.98 0.74 -2.08 16 27 C -0.18 -6.91 7.18 22.35 0.16 -6.75 16 28 H 0.20 7.99 7.80 -4.41 -0.03 7.96 16 29 H 0.06 3.12 7.12 -2.39 -0.02 3.10 16 30 H 0.07 2.50 7.99 -2.39 -0.02 2.48 16 31 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 32 H 0.07 2.58 7.98 -2.39 -0.02 2.57 16 33 H 0.07 2.44 7.90 -2.39 -0.02 2.42 16 34 H 0.13 4.98 8.06 -2.91 -0.02 4.96 16 35 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 40 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 41 H 0.06 1.77 7.66 -2.38 -0.02 1.75 16 42 H 0.06 1.67 7.66 -2.39 -0.02 1.65 16 43 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.13 4.79 6.27 -2.91 -0.02 4.77 16 Total: -1.00 -69.32 393.08 8.28 -61.04 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.96 Total: 26.56 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 7.20 Total: -12.52 kcal Atomic # 7 Polarization: -77.27 SS G_CDS: -1.56 Total: -78.83 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -0.35 Total: -41.80 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -69.32 8.28 -61.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897163821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.778 kcal (2) G-P(sol) polarization free energy of solvation -69.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds