Wall clock time and date at job start Tue Mar 31 2020 17:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46854 * 2 1 4 4 C 1.50697 * 109.46776 * 240.00829 * 2 1 3 5 5 O 1.21286 * 120.00123 * 264.99615 * 4 2 1 6 6 N 1.34777 * 120.00507 * 85.00046 * 4 2 1 7 7 C 1.46502 * 120.00033 * 180.02562 * 6 4 2 8 8 H 1.08991 * 109.46966 * 324.99290 * 7 6 4 9 9 C 1.53002 * 109.47146 * 84.99907 * 7 6 4 10 10 C 1.52998 * 109.46910 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47705 * 300.00136 * 10 9 7 12 12 C 1.53004 * 109.46901 * 59.99593 * 11 10 9 13 13 H 1.08999 * 109.46874 * 60.00431 * 12 11 10 14 14 C 1.53006 * 109.47013 * 180.02562 * 12 11 10 15 15 C 1.52996 * 109.47224 * 300.00116 * 12 11 10 16 16 H 1.09006 * 109.47032 * 180.02562 * 15 12 11 17 17 C 1.52999 * 109.47548 * 300.00229 * 15 12 11 18 18 S 1.81393 * 109.47388 * 120.00731 * 2 1 3 19 19 O 1.42096 * 108.57861 * 190.51164 * 18 2 1 20 20 O 1.42105 * 108.57947 * 59.48237 * 18 2 1 21 21 C 1.81399 * 101.92117 * 304.99766 * 18 2 1 22 22 C 1.50703 * 109.47147 * 179.97438 * 21 18 2 23 23 H 1.07998 * 120.00275 * 0.02562 * 22 21 18 24 24 C 1.37884 * 119.99709 * 179.97438 * 22 21 18 25 25 N 1.31508 * 120.00040 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99653 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47245 * 60.00334 * 26 24 22 28 28 H 1.48496 * 109.47065 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47180 * 300.00097 * 26 24 22 30 30 H 1.08996 * 109.47333 * 59.99281 * 1 2 3 31 31 H 1.09000 * 109.46854 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46674 * 299.99432 * 1 2 3 33 33 H 0.96999 * 119.99534 * 359.97438 * 6 4 2 34 34 H 1.08994 * 109.47197 * 299.99750 * 9 7 6 35 35 H 1.08999 * 109.47090 * 59.99709 * 9 7 6 36 36 H 1.09007 * 109.46733 * 60.00064 * 10 9 7 37 37 H 1.08998 * 109.47136 * 179.97438 * 10 9 7 38 38 H 1.08991 * 109.47216 * 179.97438 * 11 10 9 39 39 H 1.08999 * 109.47005 * 300.00104 * 11 10 9 40 40 H 1.09004 * 109.46516 * 59.99917 * 14 12 11 41 41 H 1.08992 * 109.47054 * 180.02562 * 14 12 11 42 42 H 1.08993 * 109.47178 * 300.00534 * 14 12 11 43 43 H 1.08993 * 109.47165 * 180.02562 * 17 15 12 44 44 H 1.09003 * 109.46812 * 299.99794 * 17 15 12 45 45 H 1.08992 * 109.47027 * 59.99700 * 17 15 12 46 46 H 1.09001 * 109.47190 * 299.99865 * 21 18 2 47 47 H 1.09004 * 109.47089 * 59.99998 * 21 18 2 48 48 H 0.97006 * 119.99966 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 8 2.3208 -1.8870 -1.1763 6 7 2.1610 -0.0378 -2.3915 7 6 2.6488 -0.7285 -3.5879 8 1 3.3924 -1.4717 -3.3005 9 6 1.4789 -1.4221 -4.2889 10 6 1.9882 -2.1428 -5.5387 11 6 2.6232 -1.1269 -6.4903 12 6 3.7930 -0.4334 -5.7892 13 1 4.5368 -1.1766 -5.5022 14 6 4.4277 0.5830 -6.7406 15 6 3.2837 0.2875 -4.5395 16 1 4.1170 0.7820 -4.0403 17 6 2.2395 1.3308 -4.9424 18 16 2.1348 -0.8553 1.4809 19 8 3.5343 -0.6351 1.5911 20 8 1.6408 -2.1877 1.4677 21 6 1.3000 0.0574 2.8079 22 6 1.6905 -0.5259 4.1414 23 1 2.3729 -1.3617 4.1863 24 6 1.1772 0.0083 5.3044 25 7 0.3466 1.0264 5.2498 26 14 1.6607 -0.7152 6.9574 27 1 3.1315 -0.6097 7.1328 28 1 0.9784 0.0328 8.0437 29 1 1.2570 -2.1433 7.0098 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.9300 0.9033 -2.4350 34 1 1.0263 -2.1455 -3.6109 35 1 0.7353 -0.6788 -4.5763 36 1 2.7321 -2.8861 -5.2516 37 1 1.1550 -2.6373 -6.0379 38 1 2.9864 -1.6405 -7.3804 39 1 1.8794 -0.3837 -6.7773 40 1 3.6835 1.3262 -7.0273 41 1 5.2612 1.0768 -6.2414 42 1 4.7904 0.0699 -7.6312 43 1 1.8770 1.8446 -4.0521 44 1 2.6919 2.0546 -5.6203 45 1 1.4062 0.8367 -5.4418 46 1 1.5951 1.1060 2.7691 47 1 0.2204 -0.0212 2.6794 48 1 -0.0142 1.4024 6.0680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905269359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:55 Heat of formation + Delta-G solvation = -138.654152 kcal Electronic energy + Delta-G solvation = -27658.198307 eV Core-core repulsion = 23839.339329 eV Total energy + Delta-G solvation = -3818.858978 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.62464 -38.94376 -35.97916 -34.99822 -34.65782 -33.54641 -33.17944 -32.80729 -30.60356 -29.02517 -27.62862 -26.08800 -24.76969 -23.56029 -22.41051 -21.86076 -20.38205 -18.92520 -17.94996 -17.48762 -16.97858 -16.42233 -15.84894 -15.54400 -15.34109 -15.15664 -14.89097 -14.75640 -14.40896 -14.21630 -13.96051 -13.64314 -13.36709 -12.91042 -12.80880 -12.65407 -12.53061 -12.39062 -12.27962 -11.93431 -11.90173 -11.79124 -11.66984 -11.43487 -11.38825 -11.04723 -11.02060 -10.99346 -10.85244 -10.74432 -10.59958 -10.44857 -10.40403 -10.15276 -9.85000 -9.76163 -9.14019 -9.04951 -8.69429 -6.33154 -4.42050 0.87430 2.58455 3.00050 3.26489 3.27808 3.33921 3.79444 4.23631 4.28341 4.33673 4.38444 4.49704 4.58743 4.77422 4.82890 4.88827 4.96344 4.99542 5.02402 5.10428 5.13728 5.18554 5.28967 5.34991 5.35997 5.40138 5.48394 5.57356 5.59850 5.63025 5.68304 5.74490 5.78219 5.80419 5.90248 5.98289 6.03813 6.07517 6.09906 6.24412 6.39860 6.63713 6.67814 7.33567 7.49132 7.74934 8.12178 8.59439 9.24818 10.78729 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.031028 B = 0.002621 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.207609 B =10679.750135 C =10757.644448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.632 4.632 3 H 0.146 0.854 4 C 0.544 3.456 5 O -0.520 6.520 6 N -0.720 5.720 7 C 0.147 3.853 8 H 0.090 0.910 9 C -0.133 4.133 10 C -0.117 4.117 11 C -0.117 4.117 12 C -0.085 4.085 13 H 0.073 0.927 14 C -0.148 4.148 15 C -0.094 4.094 16 H 0.078 0.922 17 C -0.156 4.156 18 S 2.416 3.584 19 O -0.952 6.952 20 O -0.929 6.929 21 C -0.403 4.403 22 C -0.529 4.529 23 H 0.072 0.928 24 C 0.076 3.924 25 N -0.882 5.882 26 Si 0.905 3.095 27 H -0.269 1.269 28 H -0.282 1.282 29 H -0.268 1.268 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.400 0.600 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 3.609 -23.878 24.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.736 4.736 3 H 0.164 0.836 4 C 0.329 3.671 5 O -0.395 6.395 6 N -0.373 5.373 7 C 0.043 3.957 8 H 0.108 0.892 9 C -0.171 4.171 10 C -0.155 4.155 11 C -0.154 4.154 12 C -0.104 4.104 13 H 0.092 0.908 14 C -0.205 4.205 15 C -0.113 4.113 16 H 0.096 0.904 17 C -0.213 4.213 18 S 2.596 3.404 19 O -0.949 6.949 20 O -0.926 6.926 21 C -0.538 4.538 22 C -0.568 4.568 23 H 0.090 0.910 24 C -0.130 4.130 25 N -0.519 5.519 26 Si 0.731 3.269 27 H -0.194 1.194 28 H -0.207 1.207 29 H -0.193 1.193 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.236 0.764 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.591 2.175 -23.802 23.954 hybrid contribution -0.468 1.100 0.659 1.365 sum 1.123 3.275 -23.143 23.400 Atomic orbital electron populations 1.21562 0.87881 1.04783 1.04764 1.30955 1.08892 1.15469 1.18306 0.83609 1.19490 0.77089 0.86817 0.83735 1.90859 1.48778 1.14981 1.84874 1.46039 1.67956 1.14050 1.09243 1.21027 0.96341 0.94533 0.83811 0.89157 1.21973 0.97988 1.00054 0.97109 1.21487 1.00571 0.97967 0.95481 1.21667 0.97478 0.98267 0.98011 1.21097 0.97411 0.97424 0.94421 0.90840 1.21876 1.00586 0.99020 0.99061 1.21397 0.98515 0.95902 0.95512 0.90393 1.22027 0.99265 0.98570 1.01393 1.08788 0.76862 0.77731 0.77030 1.93463 1.29596 1.86876 1.85004 1.93480 1.81662 1.32532 1.84933 1.27607 1.08456 1.08507 1.09265 1.20325 1.30287 1.17897 0.88281 0.90998 1.24914 0.94026 0.94428 0.99629 1.69929 1.29855 1.22910 1.29180 0.86413 0.79333 0.79641 0.81506 1.19394 1.20740 1.19335 0.91116 0.90201 0.89028 0.76405 0.91146 0.91461 0.91653 0.91701 0.91945 0.91578 0.92305 0.92617 0.92671 0.92894 0.91948 0.91610 0.89711 0.89270 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.88 37.16 0.33 -1.45 16 2 C -0.63 -10.01 3.15 -27.88 -0.09 -10.10 16 3 H 0.15 1.76 8.14 -51.92 -0.42 1.34 16 4 C 0.54 9.02 6.92 -10.99 -0.08 8.94 16 5 O -0.52 -10.82 15.14 -9.37 -0.14 -10.97 16 6 N -0.72 -8.62 5.00 -53.80 -0.27 -8.89 16 7 C 0.15 1.60 2.15 -67.93 -0.15 1.45 16 8 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 9 C -0.13 -1.33 5.22 -26.73 -0.14 -1.47 16 10 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 11 C -0.12 -0.79 4.93 -26.73 -0.13 -0.92 16 12 C -0.08 -0.60 2.50 -90.62 -0.23 -0.83 16 13 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 14 C -0.15 -0.88 8.84 37.16 0.33 -0.56 16 15 C -0.09 -0.75 2.41 -90.62 -0.22 -0.97 16 16 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 17 C -0.16 -1.01 7.97 37.16 0.30 -0.72 16 18 S 2.42 53.49 3.80 -107.50 -0.41 53.08 16 19 O -0.95 -23.77 18.10 -57.83 -1.05 -24.82 16 20 O -0.93 -23.55 17.21 -64.28 -1.11 -24.66 16 21 C -0.40 -9.53 4.95 36.01 0.18 -9.35 16 22 C -0.53 -14.71 9.13 -34.44 -0.31 -15.03 16 23 H 0.07 2.01 7.71 -52.49 -0.40 1.60 16 24 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 25 N -0.88 -24.50 13.29 55.43 0.74 -23.76 16 26 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.18 6.39 -51.93 -0.33 0.85 16 33 H 0.40 3.61 6.86 -40.82 -0.28 3.33 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 36 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.42 6.43 -51.93 -0.33 0.09 16 40 H 0.06 0.32 6.43 -51.93 -0.33 -0.01 16 41 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 0.33 6.50 -51.93 -0.34 -0.01 16 44 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 45 H 0.07 0.42 4.81 -51.93 -0.25 0.17 16 46 H 0.08 1.91 8.14 -51.92 -0.42 1.49 16 47 H 0.09 2.00 6.77 -51.92 -0.35 1.65 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -35.84 380.17 -9.88 -45.73 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.89 Total: 2.62 kcal Atomic # 6 Polarization: -29.67 SS G_CDS: -0.46 Total: -30.13 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 0.47 Total: -32.65 kcal Atomic # 8 Polarization: -58.14 SS G_CDS: -2.29 Total: -60.44 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 53.49 SS G_CDS: -0.41 Total: 53.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.84 -9.88 -45.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.928 kcal (2) G-P(sol) polarization free energy of solvation -35.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds