Wall clock time and date at job start Tue Mar 31 2020 17:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47413 * 2 1 4 4 C 1.50698 * 109.47045 * 120.00440 * 2 1 3 5 5 O 1.21283 * 120.00472 * 99.99838 * 4 2 1 6 6 N 1.34777 * 119.99538 * 279.99176 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 H 1.08999 * 109.47228 * 325.27715 * 7 6 4 9 9 C 1.52999 * 109.47341 * 85.27876 * 7 6 4 10 10 C 1.52997 * 109.47188 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46860 * 299.99296 * 10 9 7 12 12 C 1.53003 * 109.46811 * 60.01012 * 11 10 9 13 13 H 1.08999 * 109.47531 * 59.99527 * 12 11 10 14 14 C 1.53000 * 109.47325 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47193 * 205.27836 * 7 6 4 16 16 H 1.09004 * 109.47138 * 59.99988 * 15 7 6 17 17 C 1.53002 * 109.47147 * 299.99945 * 15 7 6 18 18 S 1.81399 * 109.46719 * 240.00120 * 2 1 3 19 19 O 1.42100 * 108.57936 * 174.48828 * 18 2 1 20 20 O 1.42107 * 108.57840 * 305.51561 * 18 2 1 21 21 C 1.81397 * 101.92466 * 59.99918 * 18 2 1 22 22 C 1.50704 * 109.47330 * 179.97438 * 21 18 2 23 23 H 1.07993 * 120.00045 * 0.02562 * 22 21 18 24 24 C 1.37877 * 119.99793 * 179.97438 * 22 21 18 25 25 N 1.31518 * 120.00004 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99746 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46681 * 60.00488 * 26 24 22 28 28 H 1.48504 * 109.46933 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47099 * 300.00445 * 26 24 22 30 30 H 1.08994 * 109.47413 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46691 * 300.00133 * 1 2 3 32 32 H 1.08995 * 109.47304 * 59.99487 * 1 2 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.46823 * 300.00095 * 9 7 6 35 35 H 1.08999 * 109.47091 * 59.99755 * 9 7 6 36 36 H 1.09002 * 109.46693 * 180.02562 * 10 9 7 37 37 H 1.08993 * 109.47585 * 60.00233 * 10 9 7 38 38 H 1.08999 * 109.47459 * 300.00495 * 11 10 9 39 39 H 1.09005 * 109.47227 * 180.02562 * 11 10 9 40 40 H 1.08990 * 109.47479 * 180.02562 * 14 12 11 41 41 H 1.09005 * 109.46703 * 299.99715 * 14 12 11 42 42 H 1.09000 * 109.47623 * 59.98920 * 14 12 11 43 43 H 1.09005 * 109.46734 * 60.00094 * 17 15 7 44 44 H 1.08998 * 109.46918 * 179.97438 * 17 15 7 45 45 H 1.08995 * 109.47013 * 299.99902 * 17 15 7 46 46 H 1.09002 * 109.47344 * 300.00341 * 21 18 2 47 47 H 1.08999 * 109.47264 * 59.99772 * 21 18 2 48 48 H 0.97004 * 119.99176 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4064 -1.8618 1.1557 6 7 2.0660 -0.0664 2.4138 7 6 2.5487 -0.7590 3.6112 8 1 2.2601 -1.8091 3.5647 9 6 4.0732 -0.6517 3.6827 10 6 4.5773 -1.3755 4.9328 11 6 3.9619 -0.7326 6.1774 12 6 2.4373 -0.8400 6.1059 13 1 2.1488 -1.8901 6.0590 14 6 1.8218 -0.1965 7.3501 15 6 1.9332 -0.1156 4.8554 16 1 0.8470 -0.1921 4.8045 17 6 2.3382 1.3583 4.9208 18 16 2.1346 -0.8551 -1.4812 19 8 3.5495 -0.7331 -1.5286 20 8 1.5477 -2.1485 -1.5285 21 6 1.4228 0.1515 -2.8118 22 6 1.8279 -0.4205 -4.1460 23 1 2.4508 -1.3016 -4.1891 24 6 1.4023 0.1807 -5.3116 25 7 0.6432 1.2534 -5.2590 26 14 1.9050 -0.5278 -6.9653 27 1 1.4071 -1.9223 -7.0783 28 1 1.3221 0.2962 -8.0546 29 1 3.3857 -0.5202 -7.0776 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.7666 0.8543 2.4737 34 1 4.5117 -1.1100 2.7963 35 1 4.3617 0.3984 3.7292 36 1 5.6634 -1.2986 4.9840 37 1 4.2889 -2.4255 4.8859 38 1 4.2504 0.3175 6.2243 39 1 4.3214 -1.2479 7.0681 40 1 0.7358 -0.2735 7.2994 41 1 2.1810 -0.7118 8.2410 42 1 2.1103 0.8536 7.3967 43 1 1.9790 1.8736 4.0299 44 1 1.8993 1.8167 5.8070 45 1 3.4242 1.4348 4.9717 46 1 0.3359 0.1471 -2.7291 47 1 1.7892 1.1747 -2.7292 48 1 0.3435 1.6760 -6.0791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905269360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:59 Heat of formation + Delta-G solvation = -139.355193 kcal Electronic energy + Delta-G solvation = -27665.328087 eV Core-core repulsion = 23846.438710 eV Total energy + Delta-G solvation = -3818.889377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.62515 -38.94974 -35.97674 -34.99589 -34.67076 -33.53448 -33.20120 -32.78426 -30.59133 -29.02457 -27.61398 -26.09693 -24.77478 -23.57697 -22.43034 -21.81103 -20.40929 -18.91748 -17.94938 -17.49275 -16.96183 -16.42734 -15.84998 -15.47423 -15.44231 -15.12742 -14.93541 -14.68616 -14.41900 -14.18224 -13.96782 -13.82269 -13.21788 -12.91785 -12.77604 -12.61170 -12.57373 -12.40272 -12.30904 -11.97458 -11.87070 -11.78908 -11.67151 -11.42683 -11.38886 -11.04629 -11.01750 -10.98842 -10.85352 -10.74707 -10.60161 -10.43624 -10.40541 -10.15242 -9.87247 -9.76593 -9.14438 -9.05417 -8.69484 -6.33232 -4.42159 0.87922 2.57433 2.99400 3.26485 3.27742 3.33915 3.80272 4.23586 4.28408 4.34020 4.38235 4.49224 4.58396 4.78658 4.83551 4.89678 4.96734 5.00501 5.02359 5.10356 5.13342 5.18479 5.28722 5.35264 5.36204 5.40952 5.48616 5.57521 5.58655 5.62379 5.67924 5.73486 5.78109 5.82196 5.90689 5.98779 6.04428 6.08637 6.10939 6.25557 6.40134 6.63539 6.67713 7.32589 7.49111 7.74843 8.10919 8.59427 9.24755 10.78655 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.031267 B = 0.002662 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.288746 B =10516.448839 C =10862.706822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.634 4.634 3 H 0.148 0.852 4 C 0.547 3.453 5 O -0.523 6.523 6 N -0.720 5.720 7 C 0.148 3.852 8 H 0.090 0.910 9 C -0.136 4.136 10 C -0.117 4.117 11 C -0.117 4.117 12 C -0.084 4.084 13 H 0.073 0.927 14 C -0.148 4.148 15 C -0.093 4.093 16 H 0.076 0.924 17 C -0.156 4.156 18 S 2.419 3.581 19 O -0.950 6.950 20 O -0.933 6.933 21 C -0.404 4.404 22 C -0.529 4.529 23 H 0.072 0.928 24 C 0.076 3.924 25 N -0.882 5.882 26 Si 0.905 3.095 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.269 1.269 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.401 0.599 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.487 3.292 23.906 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.737 4.737 3 H 0.166 0.834 4 C 0.332 3.668 5 O -0.399 6.399 6 N -0.372 5.372 7 C 0.043 3.957 8 H 0.108 0.892 9 C -0.174 4.174 10 C -0.155 4.155 11 C -0.155 4.155 12 C -0.103 4.103 13 H 0.091 0.909 14 C -0.205 4.205 15 C -0.112 4.112 16 H 0.095 0.905 17 C -0.213 4.213 18 S 2.599 3.401 19 O -0.947 6.947 20 O -0.930 6.930 21 C -0.539 4.539 22 C -0.568 4.568 23 H 0.090 0.910 24 C -0.130 4.130 25 N -0.519 5.519 26 Si 0.731 3.269 27 H -0.193 1.193 28 H -0.207 1.207 29 H -0.194 1.194 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.108 0.892 33 H 0.236 0.764 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.106 0.894 47 H 0.103 0.897 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.187 1.847 23.819 23.920 hybrid contribution -0.456 1.130 -0.655 1.384 sum 0.731 2.977 23.164 23.366 Atomic orbital electron populations 1.21546 0.87951 1.04780 1.04704 1.30985 1.08861 1.15611 1.18280 0.83446 1.19464 0.77200 0.86282 0.83897 1.90841 1.47090 1.16645 1.85303 1.46012 1.66649 1.16725 1.07849 1.21026 0.93806 0.97695 0.83133 0.89190 1.21999 0.95138 1.01395 0.98885 1.21485 1.00158 0.99952 0.93877 1.21674 0.94601 1.01313 0.97875 1.21103 0.95495 0.99853 0.93871 0.90888 1.21875 1.00594 1.00987 0.97076 1.21396 1.00305 0.95742 0.93738 0.90548 1.22035 1.02417 0.95181 1.01698 1.08716 0.76404 0.78055 0.76950 1.93460 1.28430 1.87410 1.85372 1.93467 1.79106 1.35594 1.84839 1.27610 1.08008 1.08932 1.09365 1.20323 1.34467 1.13871 0.88116 0.90987 1.24918 0.93988 0.94459 0.99648 1.69936 1.33582 1.19288 1.29077 0.86412 0.79507 0.79477 0.81491 1.19335 1.20736 1.19381 0.90169 0.91094 0.89168 0.76380 0.90973 0.91339 0.91620 0.91673 0.91547 0.91947 0.92689 0.92670 0.92284 0.92884 0.91967 0.91520 0.89353 0.89718 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 8.92 37.16 0.33 -1.43 16 2 C -0.63 -10.03 3.11 -27.88 -0.09 -10.12 16 3 H 0.15 1.79 8.14 -51.93 -0.42 1.37 16 4 C 0.55 9.07 6.97 -10.99 -0.08 8.99 16 5 O -0.52 -10.93 15.31 -3.35 -0.05 -10.98 16 6 N -0.72 -8.57 5.00 -53.81 -0.27 -8.84 16 7 C 0.15 1.60 2.15 -67.93 -0.15 1.45 16 8 H 0.09 1.16 7.57 -51.93 -0.39 0.76 16 9 C -0.14 -1.45 5.22 -26.73 -0.14 -1.59 16 10 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 11 C -0.12 -0.81 4.93 -26.73 -0.13 -0.94 16 12 C -0.08 -0.59 2.50 -90.59 -0.23 -0.81 16 13 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 14 C -0.15 -0.85 8.84 37.16 0.33 -0.52 16 15 C -0.09 -0.72 2.41 -90.59 -0.22 -0.93 16 16 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.16 -1.02 7.97 37.16 0.30 -0.73 16 18 S 2.42 53.71 3.59 -107.50 -0.39 53.33 16 19 O -0.95 -23.88 18.10 -57.83 -1.05 -24.92 16 20 O -0.93 -23.59 17.40 -62.66 -1.09 -24.68 16 21 C -0.40 -9.57 5.11 36.01 0.18 -9.38 16 22 C -0.53 -14.73 9.13 -34.44 -0.31 -15.04 16 23 H 0.07 2.01 7.71 -52.49 -0.40 1.61 16 24 C 0.08 2.08 5.46 -17.82 -0.10 1.98 16 25 N -0.88 -24.53 13.29 55.43 0.74 -23.79 16 26 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 30 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 31 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.09 1.15 6.56 -51.93 -0.34 0.81 16 33 H 0.40 3.58 6.87 -40.82 -0.28 3.30 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.44 6.43 -51.93 -0.33 0.10 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.06 0.32 6.43 -51.93 -0.33 -0.02 16 43 H 0.05 0.33 6.51 -51.93 -0.34 -0.01 16 44 H 0.06 0.35 6.43 -51.93 -0.33 0.02 16 45 H 0.07 0.45 4.81 -51.93 -0.25 0.20 16 46 H 0.09 1.98 6.87 -51.92 -0.36 1.63 16 47 H 0.08 1.91 8.14 -51.92 -0.42 1.49 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -35.92 380.72 -9.75 -45.67 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -7.90 Total: 2.65 kcal Atomic # 6 Polarization: -29.79 SS G_CDS: -0.45 Total: -30.25 kcal Atomic # 7 Polarization: -33.10 SS G_CDS: 0.47 Total: -32.63 kcal Atomic # 8 Polarization: -58.40 SS G_CDS: -2.19 Total: -60.59 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 53.71 SS G_CDS: -0.39 Total: 53.33 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.92 -9.75 -45.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.684 kcal (2) G-P(sol) polarization free energy of solvation -35.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds