Wall clock time and date at job start Tue Mar 31 2020 17:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47413 * 2 1 4 4 C 1.50698 * 109.47045 * 120.00440 * 2 1 3 5 5 O 1.21283 * 120.00472 * 99.99838 * 4 2 1 6 6 N 1.34777 * 119.99538 * 279.99176 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 H 1.08999 * 109.47228 * 325.27715 * 7 6 4 9 9 C 1.52999 * 109.47341 * 85.27876 * 7 6 4 10 10 C 1.52997 * 109.47188 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.46860 * 299.99296 * 10 9 7 12 12 C 1.53003 * 109.46811 * 60.01012 * 11 10 9 13 13 H 1.08999 * 109.47531 * 59.99527 * 12 11 10 14 14 C 1.53000 * 109.47325 * 180.02562 * 12 11 10 15 15 C 1.53001 * 109.47193 * 205.27836 * 7 6 4 16 16 H 1.09004 * 109.47138 * 59.99988 * 15 7 6 17 17 C 1.53002 * 109.47147 * 299.99945 * 15 7 6 18 18 S 1.81399 * 109.46719 * 240.00120 * 2 1 3 19 19 O 1.42100 * 108.57936 * 174.48828 * 18 2 1 20 20 O 1.42107 * 108.57840 * 305.51561 * 18 2 1 21 21 C 1.81397 * 101.92466 * 59.99918 * 18 2 1 22 22 C 1.50704 * 109.47330 * 179.97438 * 21 18 2 23 23 H 1.07993 * 120.00045 * 0.02562 * 22 21 18 24 24 C 1.37877 * 119.99793 * 179.97438 * 22 21 18 25 25 N 1.31518 * 120.00004 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99746 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46681 * 60.00488 * 26 24 22 28 28 H 1.48504 * 109.46933 * 180.02562 * 26 24 22 29 29 H 1.48497 * 109.47099 * 300.00445 * 26 24 22 30 30 H 1.08994 * 109.47413 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46691 * 300.00133 * 1 2 3 32 32 H 1.08995 * 109.47304 * 59.99487 * 1 2 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 34 34 H 1.09001 * 109.46823 * 300.00095 * 9 7 6 35 35 H 1.08999 * 109.47091 * 59.99755 * 9 7 6 36 36 H 1.09002 * 109.46693 * 180.02562 * 10 9 7 37 37 H 1.08993 * 109.47585 * 60.00233 * 10 9 7 38 38 H 1.08999 * 109.47459 * 300.00495 * 11 10 9 39 39 H 1.09005 * 109.47227 * 180.02562 * 11 10 9 40 40 H 1.08990 * 109.47479 * 180.02562 * 14 12 11 41 41 H 1.09005 * 109.46703 * 299.99715 * 14 12 11 42 42 H 1.09000 * 109.47623 * 59.98920 * 14 12 11 43 43 H 1.09005 * 109.46734 * 60.00094 * 17 15 7 44 44 H 1.08998 * 109.46918 * 179.97438 * 17 15 7 45 45 H 1.08995 * 109.47013 * 299.99902 * 17 15 7 46 46 H 1.09002 * 109.47344 * 300.00341 * 21 18 2 47 47 H 1.08999 * 109.47264 * 59.99772 * 21 18 2 48 48 H 0.97004 * 119.99176 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.4064 -1.8618 1.1557 6 7 2.0660 -0.0664 2.4138 7 6 2.5487 -0.7590 3.6112 8 1 2.2601 -1.8091 3.5647 9 6 4.0732 -0.6517 3.6827 10 6 4.5773 -1.3755 4.9328 11 6 3.9619 -0.7326 6.1774 12 6 2.4373 -0.8400 6.1059 13 1 2.1488 -1.8901 6.0590 14 6 1.8218 -0.1965 7.3501 15 6 1.9332 -0.1156 4.8554 16 1 0.8470 -0.1921 4.8045 17 6 2.3382 1.3583 4.9208 18 16 2.1346 -0.8551 -1.4812 19 8 3.5495 -0.7331 -1.5286 20 8 1.5477 -2.1485 -1.5285 21 6 1.4228 0.1515 -2.8118 22 6 1.8279 -0.4205 -4.1460 23 1 2.4508 -1.3016 -4.1891 24 6 1.4023 0.1807 -5.3116 25 7 0.6432 1.2534 -5.2590 26 14 1.9050 -0.5278 -6.9653 27 1 1.4071 -1.9223 -7.0783 28 1 1.3221 0.2962 -8.0546 29 1 3.3857 -0.5202 -7.0776 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 1.7666 0.8543 2.4737 34 1 4.5117 -1.1100 2.7963 35 1 4.3617 0.3984 3.7292 36 1 5.6634 -1.2986 4.9840 37 1 4.2889 -2.4255 4.8859 38 1 4.2504 0.3175 6.2243 39 1 4.3214 -1.2479 7.0681 40 1 0.7358 -0.2735 7.2994 41 1 2.1810 -0.7118 8.2410 42 1 2.1103 0.8536 7.3967 43 1 1.9790 1.8736 4.0299 44 1 1.8993 1.8167 5.8070 45 1 3.4242 1.4348 4.9717 46 1 0.3359 0.1471 -2.7291 47 1 1.7892 1.1747 -2.7292 48 1 0.3435 1.6760 -6.0791 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905269360.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:58 Heat of formation + Delta-G solvation = -165.470535 kcal Electronic energy + Delta-G solvation = -27666.460533 eV Core-core repulsion = 23846.438710 eV Total energy + Delta-G solvation = -3820.021823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63553 -39.96667 -37.85707 -36.84729 -35.78927 -35.41748 -34.54535 -33.51023 -31.40450 -30.95444 -28.28813 -26.73078 -25.91292 -25.58382 -23.24003 -22.68111 -21.51848 -19.91457 -19.43025 -19.03694 -18.49214 -17.87764 -17.21306 -16.97029 -16.72548 -16.27442 -16.23478 -16.05368 -15.70136 -15.23187 -15.07961 -14.57293 -14.46111 -14.12467 -14.01248 -13.93876 -13.50020 -13.43364 -13.37857 -13.23424 -13.05980 -12.96798 -12.87982 -12.77959 -12.70153 -12.53882 -12.50449 -12.32994 -12.17314 -11.82062 -11.65896 -11.60926 -11.48897 -11.19277 -11.11998 -11.04825 -10.81231 -10.75313 -10.19754 -8.41122 -6.56523 -0.86599 1.26855 1.38208 1.40813 1.49102 1.80672 2.13235 2.32457 2.92165 2.96443 3.17125 3.40829 3.61164 3.67962 3.75943 3.85491 3.93413 4.08920 4.15742 4.31754 4.36526 4.42974 4.54550 4.57899 4.60351 4.70977 4.73174 4.74702 4.76545 4.81638 4.93015 4.99751 5.03395 5.08631 5.10440 5.12239 5.20926 5.27923 5.33309 5.36949 5.40268 5.44166 5.48996 5.67221 5.74606 6.24640 6.50478 6.95407 7.13287 8.70880 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.031267 B = 0.002662 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.288746 B =10516.448839 C =10862.706822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.602 4.602 3 H 0.195 0.805 4 C 0.538 3.462 5 O -0.576 6.576 6 N -0.694 5.694 7 C 0.143 3.857 8 H 0.064 0.936 9 C -0.134 4.134 10 C -0.116 4.116 11 C -0.111 4.111 12 C -0.085 4.085 13 H 0.062 0.938 14 C -0.144 4.144 15 C -0.084 4.084 16 H 0.081 0.919 17 C -0.157 4.157 18 S 2.417 3.583 19 O -0.992 6.992 20 O -0.978 6.978 21 C -0.411 4.411 22 C -0.568 4.568 23 H 0.054 0.946 24 C 0.032 3.968 25 N -0.902 5.902 26 Si 0.956 3.044 27 H -0.267 1.267 28 H -0.264 1.264 29 H -0.267 1.267 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.420 0.580 34 H 0.033 0.967 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.430 5.784 26.064 26.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.714 4.714 3 H 0.213 0.787 4 C 0.323 3.677 5 O -0.456 6.456 6 N -0.347 5.347 7 C 0.039 3.961 8 H 0.082 0.918 9 C -0.173 4.173 10 C -0.154 4.154 11 C -0.149 4.149 12 C -0.104 4.104 13 H 0.081 0.919 14 C -0.201 4.201 15 C -0.103 4.103 16 H 0.100 0.900 17 C -0.214 4.214 18 S 2.604 3.396 19 O -0.990 6.990 20 O -0.975 6.975 21 C -0.544 4.544 22 C -0.606 4.606 23 H 0.072 0.928 24 C -0.172 4.172 25 N -0.539 5.539 26 Si 0.779 3.221 27 H -0.192 1.192 28 H -0.188 1.188 29 H -0.191 1.191 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.118 0.882 33 H 0.259 0.741 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.117 0.883 47 H 0.113 0.887 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.279 4.357 25.935 26.300 hybrid contribution -0.191 0.389 -1.181 1.258 sum 0.088 4.746 24.754 25.205 Atomic orbital electron populations 1.21748 0.85461 1.04784 1.07563 1.30542 1.10785 1.16568 1.13475 0.78726 1.19611 0.77075 0.85797 0.85193 1.90837 1.49649 1.19017 1.86071 1.45867 1.64780 1.17338 1.06666 1.21174 0.94172 0.96767 0.83949 0.91824 1.21977 0.94867 1.02190 0.98264 1.21483 1.00660 0.99240 0.93988 1.21647 0.94410 1.01846 0.96963 1.21111 0.95599 0.99417 0.94242 0.91949 1.21837 1.00595 1.01386 0.96257 1.21359 1.00307 0.96600 0.92019 0.90016 1.22066 1.02564 0.93871 1.02891 1.08106 0.75383 0.77628 0.78444 1.93400 1.30828 1.87905 1.86820 1.93407 1.79411 1.38336 1.86349 1.27574 1.08669 1.09355 1.08850 1.20677 1.35098 1.14054 0.90776 0.92799 1.25683 0.93893 0.94823 1.02782 1.69969 1.33836 1.19782 1.30265 0.85626 0.79346 0.79113 0.78025 1.19157 1.18761 1.19132 0.91733 0.86295 0.88213 0.74093 0.94843 0.89742 0.91052 0.92894 0.90404 0.90898 0.92504 0.92196 0.91348 0.92166 0.90353 0.91556 0.88322 0.88722 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.92 71.98 0.64 -2.68 16 2 C -0.60 -18.08 3.11 29.85 0.09 -17.99 16 3 H 0.20 3.99 8.14 -2.39 -0.02 3.97 16 4 C 0.54 17.50 6.97 87.66 0.61 18.11 16 5 O -0.58 -24.98 15.31 5.47 0.08 -24.90 16 6 N -0.69 -15.14 5.00 -442.54 -2.21 -17.36 16 7 C 0.14 2.98 2.15 44.99 0.10 3.07 16 8 H 0.06 1.69 7.57 -2.39 -0.02 1.67 16 9 C -0.13 -2.84 5.22 30.59 0.16 -2.68 16 10 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 11 C -0.11 -1.29 4.93 30.60 0.15 -1.14 16 12 C -0.08 -0.99 2.50 -10.77 -0.03 -1.02 16 13 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 14 C -0.14 -1.19 8.84 71.98 0.64 -0.56 16 15 C -0.08 -1.08 2.41 -10.77 -0.03 -1.11 16 16 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 17 C -0.16 -1.44 7.97 71.98 0.57 -0.86 16 18 S 2.42 110.35 3.59 -56.49 -0.20 110.15 16 19 O -0.99 -51.98 18.10 -127.37 -2.31 -54.28 16 20 O -0.98 -51.95 17.40 -122.76 -2.14 -54.09 16 21 C -0.41 -19.68 5.11 71.24 0.36 -19.31 16 22 C -0.57 -32.47 9.13 25.60 0.23 -32.24 16 23 H 0.05 3.18 7.71 -2.91 -0.02 3.15 16 24 C 0.03 1.76 5.46 84.65 0.46 2.22 16 25 N -0.90 -49.82 13.29 21.45 0.28 -49.54 16 26 Si 0.96 43.29 29.54 68.60 2.03 45.32 16 27 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 29 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 30 H 0.06 1.80 8.06 -2.39 -0.02 1.78 16 31 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.10 2.27 6.56 -2.39 -0.02 2.25 16 33 H 0.42 5.84 6.87 -92.71 -0.64 5.20 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 1.49 6.43 -2.39 -0.02 1.47 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.76 6.43 -2.39 -0.02 0.75 16 39 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.07 0.46 6.43 -2.39 -0.02 0.44 16 43 H 0.06 0.47 6.51 -2.38 -0.02 0.46 16 44 H 0.08 0.52 6.43 -2.39 -0.02 0.51 16 45 H 0.07 0.64 4.81 -2.39 -0.01 0.63 16 46 H 0.10 4.44 6.87 -2.39 -0.02 4.43 16 47 H 0.09 4.27 8.14 -2.39 -0.02 4.25 16 48 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -82.82 380.72 0.01 -82.80 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.32 Total: 19.83 kcal Atomic # 6 Polarization: -62.08 SS G_CDS: 4.15 Total: -57.93 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -1.93 Total: -66.89 kcal Atomic # 8 Polarization: -128.91 SS G_CDS: -4.36 Total: -133.27 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 110.35 SS G_CDS: -0.20 Total: 110.15 kcal Total: -82.82 0.01 -82.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269360.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.666 kcal (2) G-P(sol) polarization free energy of solvation -82.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds