Wall clock time and date at job start Tue Mar 31 2020 17:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46981 * 2 1 4 4 C 1.50699 * 109.47055 * 240.00228 * 2 1 3 5 5 O 1.21279 * 119.99997 * 264.99601 * 4 2 1 6 6 N 1.34777 * 120.00179 * 84.99951 * 4 2 1 7 7 C 1.46497 * 120.00376 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.46725 * 324.99686 * 7 6 4 9 9 C 1.53002 * 109.47499 * 84.99642 * 7 6 4 10 10 C 1.53002 * 109.47128 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47106 * 300.00123 * 10 9 7 12 12 C 1.52997 * 109.47482 * 60.00162 * 11 10 9 13 13 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 14 14 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47389 * 204.99860 * 7 6 4 16 16 H 1.09002 * 109.47497 * 299.99913 * 15 7 6 17 17 C 1.53006 * 109.47445 * 59.99687 * 15 7 6 18 18 S 1.81398 * 109.47323 * 119.99946 * 2 1 3 19 19 O 1.42100 * 108.57586 * 59.49204 * 18 2 1 20 20 O 1.42102 * 108.57442 * 190.51300 * 18 2 1 21 21 C 1.81402 * 101.92146 * 305.00227 * 18 2 1 22 22 C 1.50698 * 109.46908 * 180.02562 * 21 18 2 23 23 H 1.08004 * 119.99966 * 359.97438 * 22 21 18 24 24 C 1.37872 * 120.00032 * 179.97438 * 22 21 18 25 25 N 1.31512 * 119.99821 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00197 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46680 * 60.00305 * 26 24 22 28 28 H 1.48503 * 109.47012 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47256 * 300.00491 * 26 24 22 30 30 H 1.09001 * 109.47300 * 299.99743 * 1 2 3 31 31 H 1.09001 * 109.47496 * 59.99876 * 1 2 3 32 32 H 1.09002 * 109.46981 * 179.97438 * 1 2 3 33 33 H 0.97003 * 120.00267 * 359.97438 * 6 4 2 34 34 H 1.08996 * 109.46698 * 300.00290 * 9 7 6 35 35 H 1.09002 * 109.46838 * 59.99786 * 9 7 6 36 36 H 1.09002 * 109.47070 * 60.00059 * 10 9 7 37 37 H 1.08996 * 109.46550 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.47103 * 299.99915 * 11 10 9 39 39 H 1.08998 * 109.46862 * 180.02562 * 11 10 9 40 40 H 1.09004 * 109.46724 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.47194 * 299.99650 * 14 12 11 42 42 H 1.08992 * 109.47399 * 59.99823 * 14 12 11 43 43 H 1.08996 * 109.47165 * 180.02562 * 17 15 7 44 44 H 1.09001 * 109.46726 * 300.00265 * 17 15 7 45 45 H 1.09002 * 109.46589 * 59.99669 * 17 15 7 46 46 H 1.08996 * 109.46644 * 299.99850 * 21 18 2 47 47 H 1.08993 * 109.46662 * 60.00151 * 21 18 2 48 48 H 0.97007 * 120.00282 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3208 -1.8871 -1.1761 6 7 2.1610 -0.0380 -2.3914 7 6 2.6488 -0.7286 -3.5878 8 1 3.3925 -1.4718 -3.3003 9 6 1.4790 -1.4223 -4.2889 10 6 1.9887 -2.1442 -5.5380 11 6 2.6243 -1.1290 -6.4899 12 6 3.7940 -0.4354 -5.7889 13 1 4.5376 -1.1786 -5.5011 14 6 4.4292 0.5802 -6.7408 15 6 3.2840 0.2869 -4.5396 16 1 2.5404 1.0302 -4.8271 17 6 4.4538 0.9806 -3.8386 18 16 2.1347 -0.8551 1.4811 19 8 1.6409 -2.1875 1.4679 20 8 3.5342 -0.6349 1.5912 21 6 1.2997 0.0577 2.8079 22 6 1.6912 -0.5247 4.1416 23 1 2.3737 -1.3605 4.1864 24 6 1.1782 0.0096 5.3044 25 7 0.3475 1.0278 5.2497 26 14 1.6628 -0.7126 6.9576 27 1 3.1337 -0.6060 7.1322 28 1 0.9794 0.0347 8.0437 29 1 1.2603 -2.1411 7.0109 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9299 0.9031 -2.4351 34 1 1.0265 -2.1458 -3.6107 35 1 0.7353 -0.6791 -4.5762 36 1 2.7322 -2.8874 -5.2501 37 1 1.1554 -2.6387 -6.0371 38 1 1.8808 -0.3858 -6.7777 39 1 2.9869 -1.6432 -7.3799 40 1 5.2628 1.0741 -6.2414 41 1 4.7922 0.0664 -7.6309 42 1 3.6855 1.3234 -7.0282 43 1 4.9061 1.7044 -4.5166 44 1 4.0908 1.4945 -2.9485 45 1 5.1975 0.2373 -3.5512 46 1 1.5949 1.1062 2.7689 47 1 0.2203 -0.0211 2.6794 48 1 -0.0138 1.4035 6.0678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905269362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:06 Heat of formation + Delta-G solvation = -143.657227 kcal Electronic energy + Delta-G solvation = -27629.652882 eV Core-core repulsion = 23810.576955 eV Total energy + Delta-G solvation = -3819.075927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.46739 -38.78919 -35.97966 -34.99779 -34.64574 -33.55572 -33.35163 -33.10303 -30.63053 -29.02152 -27.40862 -25.90145 -24.69184 -23.56082 -22.08158 -21.38023 -20.61687 -19.93083 -17.98517 -17.44484 -16.97123 -16.38197 -15.59347 -15.39733 -15.21623 -15.01841 -14.88464 -14.66712 -14.53845 -14.24822 -14.08771 -13.76833 -13.10918 -13.03616 -12.71102 -12.57326 -12.44389 -12.34270 -12.13078 -12.04172 -11.93357 -11.82393 -11.71707 -11.39081 -11.33219 -11.13581 -11.04729 -10.99464 -10.85362 -10.76723 -10.64596 -10.59970 -10.36542 -10.15208 -9.84657 -9.75763 -9.13069 -9.05008 -8.69525 -6.33234 -4.42191 0.87286 2.58634 2.99566 3.26381 3.27720 3.33827 3.79280 4.23445 4.27460 4.34073 4.39676 4.51801 4.58484 4.70232 4.84415 4.89278 5.02205 5.06758 5.09471 5.12107 5.16327 5.17420 5.25326 5.34364 5.35751 5.44970 5.51331 5.59950 5.62234 5.64557 5.74269 5.75398 5.77773 5.88652 5.90506 5.96234 6.05035 6.08224 6.10017 6.20011 6.40358 6.63559 6.67721 7.33727 7.48967 7.74833 8.12323 8.59303 9.24730 10.78640 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.029705 B = 0.002670 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.363603 B =10485.217293 C =10671.886994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.632 4.632 3 H 0.146 0.854 4 C 0.545 3.455 5 O -0.520 6.520 6 N -0.719 5.719 7 C 0.147 3.853 8 H 0.091 0.909 9 C -0.131 4.131 10 C -0.117 4.117 11 C -0.115 4.115 12 C -0.084 4.084 13 H 0.074 0.926 14 C -0.148 4.148 15 C -0.092 4.092 16 H 0.075 0.925 17 C -0.153 4.153 18 S 2.415 3.585 19 O -0.929 6.929 20 O -0.952 6.952 21 C -0.403 4.403 22 C -0.529 4.529 23 H 0.072 0.928 24 C 0.076 3.924 25 N -0.882 5.882 26 Si 0.905 3.095 27 H -0.269 1.269 28 H -0.282 1.282 29 H -0.268 1.268 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.401 0.599 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 3.495 -23.494 23.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.736 4.736 3 H 0.164 0.836 4 C 0.329 3.671 5 O -0.395 6.395 6 N -0.370 5.370 7 C 0.043 3.957 8 H 0.109 0.891 9 C -0.170 4.170 10 C -0.155 4.155 11 C -0.153 4.153 12 C -0.103 4.103 13 H 0.092 0.908 14 C -0.205 4.205 15 C -0.111 4.111 16 H 0.093 0.907 17 C -0.210 4.210 18 S 2.596 3.404 19 O -0.926 6.926 20 O -0.949 6.949 21 C -0.538 4.538 22 C -0.568 4.568 23 H 0.090 0.910 24 C -0.130 4.130 25 N -0.519 5.519 26 Si 0.731 3.269 27 H -0.194 1.194 28 H -0.207 1.207 29 H -0.193 1.193 30 H 0.110 0.890 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.235 0.765 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.263 2.057 -23.417 23.616 hybrid contribution -0.520 1.101 0.634 1.372 sum 1.743 3.157 -22.783 23.067 Atomic orbital electron populations 1.21560 0.87892 1.04770 1.04767 1.30951 1.08881 1.15464 1.18304 0.83603 1.19467 0.77089 0.86800 0.83703 1.90858 1.48791 1.14984 1.84856 1.45951 1.67842 1.13969 1.09288 1.21074 0.96159 0.94639 0.83871 0.89120 1.21945 0.97841 1.00067 0.97131 1.21492 1.00583 0.97990 0.95475 1.21631 0.97351 0.98257 0.98034 1.21134 0.97459 0.97466 0.94284 0.90791 1.21876 1.00738 0.98930 0.98979 1.21433 0.97885 0.97027 0.94732 0.90661 1.21927 0.98003 1.00714 1.00379 1.08794 0.76870 0.77732 0.77040 1.93479 1.81668 1.32541 1.84936 1.93464 1.29579 1.86874 1.85007 1.27603 1.08444 1.08514 1.09267 1.20322 1.30272 1.17915 0.88280 0.91003 1.24912 0.94031 0.94423 0.99629 1.69931 1.29855 1.22905 1.29186 0.86414 0.79336 0.79637 0.81511 1.19386 1.20737 1.19343 0.89045 0.91099 0.90221 0.76495 0.91055 0.91815 0.91615 0.91674 0.91941 0.91847 0.92200 0.92685 0.92727 0.92073 0.92352 0.92296 0.89712 0.89281 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.78 8.88 37.16 0.33 -1.45 16 2 C -0.63 -9.94 3.15 -27.89 -0.09 -10.03 16 3 H 0.15 1.74 8.14 -51.92 -0.42 1.32 16 4 C 0.54 8.94 6.92 -10.99 -0.08 8.87 16 5 O -0.52 -10.77 15.14 -9.38 -0.14 -10.91 16 6 N -0.72 -8.45 4.38 -53.81 -0.24 -8.69 16 7 C 0.15 1.58 1.90 -67.93 -0.13 1.46 16 8 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 9 C -0.13 -1.32 5.49 -26.73 -0.15 -1.46 16 10 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 11 C -0.12 -0.79 5.20 -26.74 -0.14 -0.93 16 12 C -0.08 -0.60 2.25 -90.59 -0.20 -0.81 16 13 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 14 C -0.15 -0.89 8.84 37.16 0.33 -0.56 16 15 C -0.09 -0.73 1.83 -90.59 -0.17 -0.90 16 16 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 17 C -0.15 -1.28 8.68 37.16 0.32 -0.96 16 18 S 2.42 53.34 3.80 -107.50 -0.41 52.93 16 19 O -0.93 -23.52 17.21 -64.29 -1.11 -24.63 16 20 O -0.95 -23.69 18.10 -57.83 -1.05 -24.73 16 21 C -0.40 -9.51 4.95 36.00 0.18 -9.34 16 22 C -0.53 -14.70 9.13 -34.44 -0.31 -15.01 16 23 H 0.07 2.01 7.71 -52.48 -0.40 1.60 16 24 C 0.08 2.08 5.46 -17.82 -0.10 1.99 16 25 N -0.88 -24.49 13.29 55.43 0.74 -23.75 16 26 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 30 H 0.09 1.18 6.39 -51.93 -0.33 0.85 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.40 3.48 8.39 -40.82 -0.34 3.14 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.43 6.43 -51.93 -0.33 0.09 16 44 H 0.06 0.51 7.45 -51.93 -0.39 0.12 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 47 H 0.09 2.00 6.77 -51.93 -0.35 1.65 16 48 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 388.97 15.07 5.86 5.86 Total: -1.00 -35.78 388.97 -10.08 -45.85 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.36 Total: 2.28 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: -0.36 Total: -30.26 kcal Atomic # 7 Polarization: -32.94 SS G_CDS: 0.50 Total: -32.44 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -2.29 Total: -60.28 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 53.34 SS G_CDS: -0.41 Total: 52.93 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.78 -10.08 -45.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.806 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds