Wall clock time and date at job start Tue Mar 31 2020 17:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46981 * 2 1 4 4 C 1.50699 * 109.47055 * 240.00228 * 2 1 3 5 5 O 1.21279 * 119.99997 * 264.99601 * 4 2 1 6 6 N 1.34777 * 120.00179 * 84.99951 * 4 2 1 7 7 C 1.46497 * 120.00376 * 180.02562 * 6 4 2 8 8 H 1.09002 * 109.46725 * 324.99686 * 7 6 4 9 9 C 1.53002 * 109.47499 * 84.99642 * 7 6 4 10 10 C 1.53002 * 109.47128 * 180.02562 * 9 7 6 11 11 C 1.52992 * 109.47106 * 300.00123 * 10 9 7 12 12 C 1.52997 * 109.47482 * 60.00162 * 11 10 9 13 13 H 1.09002 * 109.47153 * 59.99783 * 12 11 10 14 14 C 1.53000 * 109.47060 * 180.02562 * 12 11 10 15 15 C 1.52997 * 109.47389 * 204.99860 * 7 6 4 16 16 H 1.09002 * 109.47497 * 299.99913 * 15 7 6 17 17 C 1.53006 * 109.47445 * 59.99687 * 15 7 6 18 18 S 1.81398 * 109.47323 * 119.99946 * 2 1 3 19 19 O 1.42100 * 108.57586 * 59.49204 * 18 2 1 20 20 O 1.42102 * 108.57442 * 190.51300 * 18 2 1 21 21 C 1.81402 * 101.92146 * 305.00227 * 18 2 1 22 22 C 1.50698 * 109.46908 * 180.02562 * 21 18 2 23 23 H 1.08004 * 119.99966 * 359.97438 * 22 21 18 24 24 C 1.37872 * 120.00032 * 179.97438 * 22 21 18 25 25 N 1.31512 * 119.99821 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00197 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46680 * 60.00305 * 26 24 22 28 28 H 1.48503 * 109.47012 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47256 * 300.00491 * 26 24 22 30 30 H 1.09001 * 109.47300 * 299.99743 * 1 2 3 31 31 H 1.09001 * 109.47496 * 59.99876 * 1 2 3 32 32 H 1.09002 * 109.46981 * 179.97438 * 1 2 3 33 33 H 0.97003 * 120.00267 * 359.97438 * 6 4 2 34 34 H 1.08996 * 109.46698 * 300.00290 * 9 7 6 35 35 H 1.09002 * 109.46838 * 59.99786 * 9 7 6 36 36 H 1.09002 * 109.47070 * 60.00059 * 10 9 7 37 37 H 1.08996 * 109.46550 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.47103 * 299.99915 * 11 10 9 39 39 H 1.08998 * 109.46862 * 180.02562 * 11 10 9 40 40 H 1.09004 * 109.46724 * 180.02562 * 14 12 11 41 41 H 1.09001 * 109.47194 * 299.99650 * 14 12 11 42 42 H 1.08992 * 109.47399 * 59.99823 * 14 12 11 43 43 H 1.08996 * 109.47165 * 180.02562 * 17 15 7 44 44 H 1.09001 * 109.46726 * 300.00265 * 17 15 7 45 45 H 1.09002 * 109.46589 * 59.99669 * 17 15 7 46 46 H 1.08996 * 109.46644 * 299.99850 * 21 18 2 47 47 H 1.08993 * 109.46662 * 60.00151 * 21 18 2 48 48 H 0.97007 * 120.00282 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3208 -1.8871 -1.1761 6 7 2.1610 -0.0380 -2.3914 7 6 2.6488 -0.7286 -3.5878 8 1 3.3925 -1.4718 -3.3003 9 6 1.4790 -1.4223 -4.2889 10 6 1.9887 -2.1442 -5.5380 11 6 2.6243 -1.1290 -6.4899 12 6 3.7940 -0.4354 -5.7889 13 1 4.5376 -1.1786 -5.5011 14 6 4.4292 0.5802 -6.7408 15 6 3.2840 0.2869 -4.5396 16 1 2.5404 1.0302 -4.8271 17 6 4.4538 0.9806 -3.8386 18 16 2.1347 -0.8551 1.4811 19 8 1.6409 -2.1875 1.4679 20 8 3.5342 -0.6349 1.5912 21 6 1.2997 0.0577 2.8079 22 6 1.6912 -0.5247 4.1416 23 1 2.3737 -1.3605 4.1864 24 6 1.1782 0.0096 5.3044 25 7 0.3475 1.0278 5.2497 26 14 1.6628 -0.7126 6.9576 27 1 3.1337 -0.6060 7.1322 28 1 0.9794 0.0347 8.0437 29 1 1.2603 -2.1411 7.0109 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9299 0.9031 -2.4351 34 1 1.0265 -2.1458 -3.6107 35 1 0.7353 -0.6791 -4.5762 36 1 2.7322 -2.8874 -5.2501 37 1 1.1554 -2.6387 -6.0371 38 1 1.8808 -0.3858 -6.7777 39 1 2.9869 -1.6432 -7.3799 40 1 5.2628 1.0741 -6.2414 41 1 4.7922 0.0664 -7.6309 42 1 3.6855 1.3234 -7.0282 43 1 4.9061 1.7044 -4.5166 44 1 4.0908 1.4945 -2.9485 45 1 5.1975 0.2373 -3.5512 46 1 1.5949 1.1062 2.7689 47 1 0.2203 -0.0211 2.6794 48 1 -0.0138 1.4035 6.0678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905269362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:05 Heat of formation + Delta-G solvation = -168.993191 kcal Electronic energy + Delta-G solvation = -27630.751532 eV Core-core repulsion = 23810.576955 eV Total energy + Delta-G solvation = -3820.174577 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.165 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52473 -39.75828 -37.85001 -36.84610 -35.74673 -35.42290 -34.53152 -33.99281 -31.49222 -30.94398 -28.10208 -26.61077 -25.82491 -25.55261 -23.01155 -22.13825 -21.60202 -20.74105 -19.64336 -19.11896 -18.46812 -17.86287 -17.25841 -16.84750 -16.68847 -16.17916 -16.07606 -15.64609 -15.55941 -15.40428 -14.96178 -14.92895 -14.47236 -14.14301 -14.08925 -13.76825 -13.57757 -13.41462 -13.34738 -13.06597 -13.01303 -12.95206 -12.87617 -12.76487 -12.70252 -12.63017 -12.49595 -12.46037 -12.03272 -11.81026 -11.79205 -11.63392 -11.50943 -11.36495 -11.12005 -11.05524 -10.78548 -10.74370 -10.17024 -8.40789 -6.56162 -0.86440 1.29299 1.38309 1.40882 1.49149 1.81742 2.12866 2.32529 2.92464 2.96330 3.17761 3.41241 3.57289 3.70143 3.77559 3.84199 3.94742 4.05927 4.15472 4.37304 4.41417 4.48118 4.48643 4.58550 4.61217 4.67181 4.70874 4.75347 4.76840 4.83832 4.95576 4.97216 5.06805 5.08432 5.09243 5.14168 5.18396 5.24580 5.31077 5.35911 5.37227 5.44797 5.51950 5.60645 5.75065 6.27520 6.50836 6.98135 7.13622 8.71195 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.029705 B = 0.002670 C = 0.002623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.363603 B =10485.217293 C =10671.886994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.601 4.601 3 H 0.195 0.805 4 C 0.537 3.463 5 O -0.572 6.572 6 N -0.693 5.693 7 C 0.142 3.858 8 H 0.058 0.942 9 C -0.127 4.127 10 C -0.117 4.117 11 C -0.109 4.109 12 C -0.085 4.085 13 H 0.059 0.941 14 C -0.144 4.144 15 C -0.082 4.082 16 H 0.099 0.901 17 C -0.155 4.155 18 S 2.415 3.585 19 O -0.976 6.976 20 O -0.993 6.993 21 C -0.410 4.410 22 C -0.567 4.567 23 H 0.054 0.946 24 C 0.032 3.968 25 N -0.902 5.902 26 Si 0.956 3.044 27 H -0.266 1.266 28 H -0.264 1.264 29 H -0.267 1.267 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.062 0.938 33 H 0.421 0.579 34 H 0.040 0.960 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.055 0.945 45 H 0.039 0.961 46 H 0.095 0.905 47 H 0.099 0.901 48 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 6.007 -25.715 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.712 4.712 3 H 0.212 0.788 4 C 0.322 3.678 5 O -0.452 6.452 6 N -0.345 5.345 7 C 0.038 3.962 8 H 0.076 0.924 9 C -0.166 4.166 10 C -0.155 4.155 11 C -0.147 4.147 12 C -0.104 4.104 13 H 0.077 0.923 14 C -0.201 4.201 15 C -0.101 4.101 16 H 0.117 0.883 17 C -0.213 4.213 18 S 2.602 3.398 19 O -0.973 6.973 20 O -0.990 6.990 21 C -0.544 4.544 22 C -0.606 4.606 23 H 0.072 0.928 24 C -0.172 4.172 25 N -0.539 5.539 26 Si 0.779 3.221 27 H -0.191 1.191 28 H -0.188 1.188 29 H -0.192 1.192 30 H 0.118 0.882 31 H 0.136 0.864 32 H 0.081 0.919 33 H 0.259 0.741 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.348 4.588 -25.594 26.037 hybrid contribution -0.248 0.356 1.177 1.254 sum 1.100 4.943 -24.418 24.937 Atomic orbital electron populations 1.21745 0.85568 1.04689 1.07506 1.30508 1.10671 1.16491 1.13530 0.78792 1.19591 0.77019 0.86298 0.84933 1.90854 1.51325 1.17329 1.85645 1.45793 1.65819 1.14727 1.08143 1.21222 0.96027 0.95067 0.83855 0.92375 1.21903 0.97714 0.99877 0.97095 1.21495 1.00647 0.98154 0.95192 1.21601 0.97306 0.98052 0.97694 1.21137 0.97427 0.97564 0.94247 0.92282 1.21841 1.00888 0.98691 0.98698 1.21411 0.98035 0.96539 0.94096 0.88285 1.21962 0.97825 1.00631 1.00835 1.08168 0.75895 0.77240 0.78507 1.93420 1.81977 1.35484 1.86393 1.93406 1.31792 1.87281 1.86512 1.27570 1.09140 1.08917 1.08778 1.20679 1.30760 1.18209 0.90937 0.92796 1.25676 0.93941 0.94795 1.02753 1.69965 1.30146 1.23390 1.30359 0.85631 0.79292 0.79151 0.78062 1.19088 1.18786 1.19217 0.88199 0.86412 0.91855 0.74101 0.94152 0.89707 0.93161 0.90717 0.90517 0.90874 0.92245 0.92167 0.91638 0.90171 0.92554 0.94192 0.88671 0.88357 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 8.88 71.98 0.64 -2.70 16 2 C -0.60 -17.88 3.15 29.85 0.09 -17.79 16 3 H 0.19 3.89 8.14 -2.39 -0.02 3.87 16 4 C 0.54 17.24 6.92 87.66 0.61 17.85 16 5 O -0.57 -24.60 15.14 11.25 0.17 -24.43 16 6 N -0.69 -14.86 4.38 -442.54 -1.94 -16.80 16 7 C 0.14 2.93 1.90 44.99 0.09 3.01 16 8 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 9 C -0.13 -2.40 5.49 30.60 0.17 -2.23 16 10 C -0.12 -1.80 5.92 30.59 0.18 -1.62 16 11 C -0.11 -1.20 5.20 30.59 0.16 -1.04 16 12 C -0.08 -1.03 2.25 -10.78 -0.02 -1.06 16 13 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 14 C -0.14 -1.29 8.84 71.98 0.64 -0.65 16 15 C -0.08 -1.10 1.83 -10.78 -0.02 -1.12 16 16 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 17 C -0.16 -2.29 8.68 71.98 0.62 -1.66 16 18 S 2.41 109.54 3.80 -56.49 -0.21 109.33 16 19 O -0.98 -51.97 17.21 -121.20 -2.09 -54.05 16 20 O -0.99 -51.23 18.10 -127.37 -2.31 -53.54 16 21 C -0.41 -19.61 4.95 71.24 0.35 -19.25 16 22 C -0.57 -32.40 9.13 25.60 0.23 -32.17 16 23 H 0.05 3.17 7.71 -2.91 -0.02 3.15 16 24 C 0.03 1.77 5.46 84.65 0.46 2.23 16 25 N -0.90 -49.80 13.29 21.45 0.28 -49.51 16 26 Si 0.96 43.26 29.54 68.60 2.03 45.28 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 30 H 0.10 2.32 6.39 -2.39 -0.02 2.30 16 31 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.42 5.59 8.39 -92.71 -0.78 4.81 16 34 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.55 6.43 -2.39 -0.02 0.53 16 41 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.08 0.89 6.43 -2.39 -0.02 0.87 16 44 H 0.06 0.84 7.45 -2.39 -0.02 0.82 16 45 H 0.04 0.73 8.14 -2.39 -0.02 0.72 16 46 H 0.10 4.27 8.14 -2.39 -0.02 4.25 16 47 H 0.10 4.44 6.77 -2.39 -0.02 4.42 16 48 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 Total: -1.00 -82.49 388.97 0.30 -82.19 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.16 Total: 19.74 kcal Atomic # 6 Polarization: -62.41 SS G_CDS: 4.20 Total: -58.21 kcal Atomic # 7 Polarization: -64.66 SS G_CDS: -1.65 Total: -66.31 kcal Atomic # 8 Polarization: -127.80 SS G_CDS: -4.22 Total: -132.02 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 109.54 SS G_CDS: -0.21 Total: 109.33 kcal Total: -82.49 0.30 -82.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905269362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.800 kcal (2) G-P(sol) polarization free energy of solvation -82.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds