Wall clock time and date at job start Tue Mar 31 2020 15:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09002 * 109.47078 * 305.54842 * 3 2 1 5 5 C 1.50696 * 109.47160 * 185.54913 * 3 2 1 6 6 H 1.08003 * 120.00517 * 245.59877 * 5 3 2 7 7 C 1.37879 * 119.99945 * 65.60451 * 5 3 2 8 8 N 1.31514 * 119.99762 * 196.28228 * 7 5 3 9 9 Si 1.86796 * 120.00093 * 16.28577 * 7 5 3 10 10 H 1.48498 * 109.47089 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46976 * 299.99625 * 9 7 5 12 12 H 1.48501 * 109.47383 * 59.99643 * 9 7 5 13 13 N 1.46496 * 109.47221 * 65.54989 * 3 2 1 14 14 C 1.34780 * 120.00152 * 275.00228 * 13 3 2 15 15 O 1.21278 * 119.99690 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00321 * 179.97438 * 14 13 3 17 17 C 1.50698 * 115.55022 * 325.72645 * 16 14 13 18 18 O 1.20826 * 119.99724 * 214.41671 * 17 16 14 19 19 O 1.34234 * 119.99951 * 34.40962 * 17 16 14 20 20 C 1.45208 * 116.99471 * 180.02562 * 19 17 16 21 21 C 1.53003 * 117.49701 * 111.38884 * 16 14 13 22 22 C 1.52992 * 117.49952 * 180.02562 * 16 14 13 23 23 H 1.09001 * 117.50004 * 0.02562 * 22 16 14 24 24 C 1.50706 * 117.49855 * 145.02322 * 22 16 14 25 25 C 1.38229 * 119.99630 * 59.72897 * 24 22 16 26 26 C 1.38242 * 119.99778 * 179.76893 * 25 24 22 27 27 C 1.38232 * 119.99608 * 0.50086 * 26 25 24 28 28 C 1.38234 * 120.00122 * 359.75283 * 27 26 25 29 29 C 1.38231 * 120.00175 * 359.97438 * 28 27 26 30 30 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 32 32 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 33 33 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 34 34 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 35 35 H 0.96999 * 120.00575 * 354.83297 * 8 7 5 36 36 H 0.97000 * 120.00343 * 94.99827 * 13 3 2 37 37 H 1.08992 * 109.47070 * 300.00302 * 20 19 17 38 38 H 1.08997 * 109.46931 * 60.00325 * 20 19 17 39 39 H 1.09000 * 109.46359 * 180.02562 * 20 19 17 40 40 H 1.08991 * 117.50144 * 214.98337 * 21 16 14 41 41 H 1.09003 * 117.49937 * 359.97438 * 21 16 14 42 42 H 1.08003 * 120.00396 * 359.97438 * 25 24 22 43 43 H 1.07996 * 120.00198 * 180.22877 * 26 25 24 44 44 H 1.08001 * 119.99695 * 179.72473 * 27 26 25 45 45 H 1.08004 * 119.99835 * 179.97438 * 28 27 26 46 46 H 1.08002 * 120.00280 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 3.5406 1.4448 -0.1374 6 1 4.1567 1.8043 0.6736 7 6 4.1273 0.9879 -1.2985 8 7 5.4072 0.6861 -1.3139 9 14 3.1041 0.7977 -2.8497 10 1 3.9635 0.2933 -3.9507 11 1 2.0025 -0.1666 -2.6009 12 1 2.5327 2.1144 -3.2305 13 7 1.6637 2.0935 1.2573 14 6 0.4475 2.6600 1.3853 15 8 -0.3353 2.6312 0.4594 16 6 0.0602 3.3292 2.6789 17 6 0.6156 2.6973 3.9292 18 8 -0.0372 2.6947 4.9460 19 8 1.8353 2.1371 3.9133 20 6 2.3058 1.5468 5.1538 21 6 -0.0987 4.8509 2.6671 22 6 -1.3343 3.9530 2.7617 23 1 -1.9718 3.8791 1.8807 24 6 -2.0477 3.8887 4.0876 25 6 -1.4827 4.4732 5.2055 26 6 -2.1394 4.4183 6.4208 27 6 -3.3562 3.7700 6.5201 28 6 -3.9187 3.1809 5.4032 29 6 -3.2647 3.2407 4.1869 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.9549 0.8552 -0.5313 36 1 2.2899 2.1168 1.9978 37 1 2.3451 2.3125 5.9285 38 1 1.6234 0.7541 5.4606 39 1 3.3021 1.1311 5.0033 40 1 0.1980 5.3948 3.5638 41 1 0.0773 5.3680 1.7239 42 1 -0.5297 4.9756 5.1289 43 1 -1.6997 4.8782 7.2935 44 1 -3.8671 3.7233 7.4705 45 1 -4.8692 2.6740 5.4810 46 1 -3.7040 2.7801 3.3143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:03 Heat of formation + Delta-G solvation = -58.833291 kcal Electronic energy + Delta-G solvation = -29593.477160 eV Core-core repulsion = 25642.635524 eV Total energy + Delta-G solvation = -3950.841637 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33717 -39.38105 -39.00919 -37.09903 -35.96519 -35.03742 -32.45677 -31.55498 -30.93565 -30.59721 -28.25698 -27.28897 -25.07998 -23.99838 -22.62519 -22.40209 -21.91692 -20.74381 -19.83208 -19.62626 -18.48975 -17.42636 -17.21002 -16.47385 -16.35807 -15.64269 -15.49418 -15.09600 -14.80442 -14.67555 -14.16939 -13.92176 -13.63355 -13.35982 -13.24676 -13.22430 -12.78737 -12.59175 -12.47462 -12.35865 -12.08002 -12.06024 -11.72120 -11.44584 -11.22021 -10.94549 -10.89519 -10.86361 -10.76278 -10.68033 -10.46468 -10.43220 -9.89289 -9.60413 -9.28788 -9.04281 -8.79380 -8.40461 -8.34371 -8.10011 -6.58378 -4.21995 1.24262 1.47115 2.00922 2.47325 2.98097 3.37864 3.43622 3.52788 3.59170 3.72187 4.01994 4.34069 4.41140 4.56284 4.71132 4.74888 4.86377 4.98585 5.05953 5.08123 5.13821 5.16208 5.22595 5.43767 5.45270 5.49529 5.62370 5.66695 5.87315 5.99083 6.06419 6.07233 6.09051 6.26639 6.27965 6.48002 6.52766 6.63579 6.68128 6.78434 6.93667 7.02483 7.03448 7.35951 7.38377 7.63425 7.66866 8.23347 8.46101 8.69454 8.94776 9.46889 10.82431 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.003605 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.811928 B = 7765.746744 C = 8357.864180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.247 3.753 4 H 0.042 0.958 5 C -0.615 4.615 6 H 0.062 0.938 7 C 0.039 3.961 8 N -0.899 5.899 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.684 5.684 14 C 0.540 3.460 15 O -0.542 6.542 16 C -0.167 4.167 17 C 0.498 3.502 18 O -0.482 6.482 19 O -0.352 6.352 20 C 0.040 3.960 21 C -0.120 4.120 22 C -0.047 4.047 23 H 0.141 0.859 24 C -0.053 4.053 25 C -0.059 4.059 26 C -0.128 4.128 27 C -0.119 4.119 28 C -0.130 4.130 29 C -0.104 4.104 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.269 0.731 36 H 0.402 0.598 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.811 6.579 14.691 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.060 0.940 5 C -0.652 4.652 6 H 0.080 0.920 7 C -0.167 4.167 8 N -0.532 5.532 9 Si 0.867 3.133 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.335 5.335 14 C 0.323 3.677 15 O -0.421 6.421 16 C -0.171 4.171 17 C 0.340 3.660 18 O -0.369 6.369 19 O -0.269 6.269 20 C -0.054 4.054 21 C -0.157 4.157 22 C -0.065 4.065 23 H 0.159 0.841 24 C -0.053 4.053 25 C -0.077 4.077 26 C -0.146 4.146 27 C -0.137 4.137 28 C -0.148 4.148 29 C -0.122 4.122 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.240 0.760 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.141 0.859 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.387 5.974 12.781 19.449 hybrid contribution 0.551 0.254 2.308 2.387 sum -12.836 6.228 15.089 20.766 Atomic orbital electron populations 1.21886 0.97426 0.98937 1.01866 1.22366 0.93767 0.99777 1.01902 1.19109 0.95957 0.88580 0.82014 0.94001 1.22084 0.89602 1.49430 1.04128 0.91971 1.25670 0.97544 0.92377 1.01143 1.70875 1.07058 1.40940 1.34303 0.84124 0.75519 0.77730 0.75891 1.20946 1.19490 1.20585 1.46417 1.14078 1.54408 1.18558 1.18781 0.83265 0.79413 0.86209 1.90675 1.51139 1.60309 1.39961 1.21404 1.03969 0.99096 0.92655 1.22219 0.79505 0.75657 0.88572 1.90749 1.58297 1.54288 1.33524 1.86385 1.33419 1.67736 1.39320 1.23304 1.00475 0.97895 0.83715 1.23332 0.99453 0.87445 1.05455 1.21266 0.87886 0.99247 0.98139 0.84131 1.18875 0.94831 0.98856 0.92760 1.20737 0.97647 0.97004 0.92287 1.20941 0.95666 1.00755 0.97248 1.21052 0.96040 0.98381 0.98211 1.20996 1.00102 1.00806 0.92892 1.20895 0.94730 0.98611 0.97930 0.95033 0.93467 0.92926 0.91180 0.93073 0.92116 0.76002 0.91901 0.91815 0.87677 0.87003 0.85894 0.87063 0.86647 0.86648 0.86407 0.86150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.53 37.15 0.32 -2.62 16 2 C -0.14 -3.13 5.28 -26.73 -0.14 -3.27 16 3 C 0.25 5.86 1.82 -69.08 -0.13 5.73 16 4 H 0.04 1.07 6.26 -51.93 -0.32 0.74 16 5 C -0.61 -16.46 9.01 -34.44 -0.31 -16.77 16 6 H 0.06 1.75 7.96 -52.48 -0.42 1.33 16 7 C 0.04 1.09 5.32 -17.82 -0.09 0.99 16 8 N -0.90 -26.46 13.70 55.43 0.76 -25.70 16 9 Si 1.04 24.78 26.27 -169.99 -4.47 20.31 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -5.99 5.67 56.52 0.32 -5.67 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.68 -14.12 4.84 -54.93 -0.27 -14.39 16 14 C 0.54 10.28 5.98 -10.98 -0.07 10.22 16 15 O -0.54 -11.44 13.40 5.56 0.07 -11.37 16 16 C -0.17 -2.53 2.57 -156.82 -0.40 -2.93 16 17 C 0.50 7.49 7.34 36.00 0.26 7.76 16 18 O -0.48 -7.36 11.45 -18.75 -0.21 -7.58 16 19 O -0.35 -5.17 7.65 -39.27 -0.30 -5.47 16 20 C 0.04 0.44 10.56 101.05 1.07 1.51 16 21 C -0.12 -1.43 9.28 -26.72 -0.25 -1.68 16 22 C -0.05 -0.62 5.56 -91.76 -0.51 -1.13 16 23 H 0.14 1.88 7.67 -51.93 -0.40 1.48 16 24 C -0.05 -0.69 4.38 -104.62 -0.46 -1.15 16 25 C -0.06 -0.72 6.17 -39.58 -0.24 -0.96 16 26 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 27 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 28 C -0.13 -1.44 10.05 -39.59 -0.40 -1.84 16 29 C -0.10 -1.28 9.74 -39.59 -0.39 -1.66 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.97 5.63 -51.93 -0.29 0.67 16 32 H 0.05 1.10 7.88 -51.93 -0.41 0.69 16 33 H 0.07 1.63 4.74 -51.93 -0.25 1.38 16 34 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.27 7.83 8.73 -40.82 -0.36 7.47 16 36 H 0.40 7.88 5.68 -40.82 -0.23 7.65 16 37 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 38 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.11 1.11 6.18 -51.93 -0.32 0.79 16 41 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.11 1.26 5.77 -52.48 -0.30 0.96 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 46 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 366.39 15.07 5.52 5.52 Total: -1.00 -31.53 366.39 -7.83 -39.36 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -6.40 Total: 10.62 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -2.53 Total: -11.30 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.49 Total: -40.09 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.44 Total: -24.41 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -4.47 Total: 20.31 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.53 -7.83 -39.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.476 kcal (2) G-P(sol) polarization free energy of solvation -31.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds