Wall clock time and date at job start Tue Mar 31 2020 15:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.09002 * 109.47078 * 305.54842 * 3 2 1 5 5 C 1.50696 * 109.47160 * 185.54913 * 3 2 1 6 6 H 1.08003 * 120.00517 * 245.59877 * 5 3 2 7 7 C 1.37879 * 119.99945 * 65.60451 * 5 3 2 8 8 N 1.31514 * 119.99762 * 196.28228 * 7 5 3 9 9 Si 1.86796 * 120.00093 * 16.28577 * 7 5 3 10 10 H 1.48498 * 109.47089 * 180.02562 * 9 7 5 11 11 H 1.48501 * 109.46976 * 299.99625 * 9 7 5 12 12 H 1.48501 * 109.47383 * 59.99643 * 9 7 5 13 13 N 1.46496 * 109.47221 * 65.54989 * 3 2 1 14 14 C 1.34780 * 120.00152 * 275.00228 * 13 3 2 15 15 O 1.21278 * 119.99690 * 359.97438 * 14 13 3 16 16 C 1.50702 * 120.00321 * 179.97438 * 14 13 3 17 17 C 1.50698 * 115.55022 * 325.72645 * 16 14 13 18 18 O 1.20826 * 119.99724 * 214.41671 * 17 16 14 19 19 O 1.34234 * 119.99951 * 34.40962 * 17 16 14 20 20 C 1.45208 * 116.99471 * 180.02562 * 19 17 16 21 21 C 1.53003 * 117.49701 * 111.38884 * 16 14 13 22 22 C 1.52992 * 117.49952 * 180.02562 * 16 14 13 23 23 H 1.09001 * 117.50004 * 0.02562 * 22 16 14 24 24 C 1.50706 * 117.49855 * 145.02322 * 22 16 14 25 25 C 1.38229 * 119.99630 * 59.72897 * 24 22 16 26 26 C 1.38242 * 119.99778 * 179.76893 * 25 24 22 27 27 C 1.38232 * 119.99608 * 0.50086 * 26 25 24 28 28 C 1.38234 * 120.00122 * 359.75283 * 27 26 25 29 29 C 1.38231 * 120.00175 * 359.97438 * 28 27 26 30 30 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 32 32 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 33 33 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 34 34 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 35 35 H 0.96999 * 120.00575 * 354.83297 * 8 7 5 36 36 H 0.97000 * 120.00343 * 94.99827 * 13 3 2 37 37 H 1.08992 * 109.47070 * 300.00302 * 20 19 17 38 38 H 1.08997 * 109.46931 * 60.00325 * 20 19 17 39 39 H 1.09000 * 109.46359 * 180.02562 * 20 19 17 40 40 H 1.08991 * 117.50144 * 214.98337 * 21 16 14 41 41 H 1.09003 * 117.49937 * 359.97438 * 21 16 14 42 42 H 1.08003 * 120.00396 * 359.97438 * 25 24 22 43 43 H 1.07996 * 120.00198 * 180.22877 * 26 25 24 44 44 H 1.08001 * 119.99695 * 179.72473 * 27 26 25 45 45 H 1.08004 * 119.99835 * 179.97438 * 28 27 26 46 46 H 1.08002 * 120.00280 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5977 1.9842 -0.8361 5 6 3.5406 1.4448 -0.1374 6 1 4.1567 1.8043 0.6736 7 6 4.1273 0.9879 -1.2985 8 7 5.4072 0.6861 -1.3139 9 14 3.1041 0.7977 -2.8497 10 1 3.9635 0.2933 -3.9507 11 1 2.0025 -0.1666 -2.6009 12 1 2.5327 2.1144 -3.2305 13 7 1.6637 2.0935 1.2573 14 6 0.4475 2.6600 1.3853 15 8 -0.3353 2.6312 0.4594 16 6 0.0602 3.3292 2.6789 17 6 0.6156 2.6973 3.9292 18 8 -0.0372 2.6947 4.9460 19 8 1.8353 2.1371 3.9133 20 6 2.3058 1.5468 5.1538 21 6 -0.0987 4.8509 2.6671 22 6 -1.3343 3.9530 2.7617 23 1 -1.9718 3.8791 1.8807 24 6 -2.0477 3.8887 4.0876 25 6 -1.4827 4.4732 5.2055 26 6 -2.1394 4.4183 6.4208 27 6 -3.3562 3.7700 6.5201 28 6 -3.9187 3.1809 5.4032 29 6 -3.2647 3.2407 4.1869 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.9549 0.8552 -0.5313 36 1 2.2899 2.1168 1.9978 37 1 2.3451 2.3125 5.9285 38 1 1.6234 0.7541 5.4606 39 1 3.3021 1.1311 5.0033 40 1 0.1980 5.3948 3.5638 41 1 0.0773 5.3680 1.7239 42 1 -0.5297 4.9756 5.1289 43 1 -1.6997 4.8782 7.2935 44 1 -3.8671 3.7233 7.4705 45 1 -4.8692 2.6740 5.4810 46 1 -3.7040 2.7801 3.3143 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399539.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:02 Heat of formation + Delta-G solvation = -76.692804 kcal Electronic energy + Delta-G solvation = -29594.251607 eV Core-core repulsion = 25642.635524 eV Total energy + Delta-G solvation = -3951.616083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.48075 -40.64311 -40.14892 -38.21427 -37.26091 -36.60904 -34.46025 -33.21721 -31.80754 -31.56022 -29.49195 -28.86625 -26.31531 -24.91445 -24.30524 -23.58030 -23.16168 -21.94981 -21.33100 -20.97741 -20.05749 -19.03663 -18.27490 -17.61882 -17.51434 -17.21842 -16.65295 -16.30529 -16.00850 -15.86034 -15.49225 -15.14694 -15.02348 -14.62564 -14.48784 -14.37558 -14.24209 -14.15175 -13.94930 -13.71728 -13.57572 -13.05111 -12.96554 -12.71565 -12.55160 -12.42822 -12.27458 -12.12825 -11.93584 -11.86762 -11.79344 -11.69209 -11.54111 -11.38238 -11.09348 -10.79023 -10.46982 -9.82838 -9.66452 -9.31179 -8.78481 -6.42935 0.31826 0.59849 0.93448 1.36644 1.47036 1.51750 1.64276 1.71282 2.27846 2.43272 2.50530 3.01853 3.02929 3.28279 3.50865 3.60004 3.68525 3.91352 4.14134 4.18459 4.22092 4.28957 4.30057 4.30359 4.38419 4.45842 4.53498 4.55015 4.63946 4.67426 4.78439 4.83666 4.94693 5.07802 5.14563 5.18780 5.20960 5.22317 5.27670 5.53044 5.63479 5.64209 5.68294 5.69088 5.74522 6.01856 6.19161 6.53167 6.53895 6.80505 7.27727 7.38199 8.61288 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019619 B = 0.003605 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.811928 B = 7765.746744 C = 8357.864180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.136 4.136 3 C 0.251 3.749 4 H 0.028 0.972 5 C -0.611 4.611 6 H 0.038 0.962 7 C -0.004 4.004 8 N -0.928 5.928 9 Si 1.070 2.930 10 H -0.284 1.284 11 H -0.244 1.244 12 H -0.271 1.271 13 N -0.691 5.691 14 C 0.542 3.458 15 O -0.564 6.564 16 C -0.185 4.185 17 C 0.500 3.500 18 O -0.485 6.485 19 O -0.369 6.369 20 C 0.034 3.966 21 C -0.099 4.099 22 C -0.039 4.039 23 H 0.136 0.864 24 C -0.069 4.069 25 C -0.069 4.069 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.136 4.136 29 C -0.121 4.121 30 H 0.056 0.944 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.258 0.742 36 H 0.406 0.594 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.689 6.972 15.971 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.175 4.175 3 C 0.147 3.853 4 H 0.046 0.954 5 C -0.649 4.649 6 H 0.056 0.944 7 C -0.205 4.205 8 N -0.563 5.563 9 Si 0.892 3.108 10 H -0.209 1.209 11 H -0.168 1.168 12 H -0.196 1.196 13 N -0.342 5.342 14 C 0.327 3.673 15 O -0.445 6.445 16 C -0.189 4.189 17 C 0.343 3.657 18 O -0.372 6.372 19 O -0.286 6.286 20 C -0.059 4.059 21 C -0.136 4.136 22 C -0.058 4.058 23 H 0.153 0.847 24 C -0.069 4.069 25 C -0.087 4.087 26 C -0.154 4.154 27 C -0.139 4.139 28 C -0.154 4.154 29 C -0.139 4.139 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.245 0.755 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.153 0.847 41 H 0.148 0.852 42 H 0.135 0.865 43 H 0.153 0.847 44 H 0.158 0.842 45 H 0.156 0.844 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.276 6.376 14.102 21.746 hybrid contribution 1.130 0.169 2.036 2.335 sum -14.146 6.545 16.139 22.437 Atomic orbital electron populations 1.21764 0.95572 1.00396 1.01331 1.22264 0.95329 0.98453 1.01474 1.18825 0.93695 0.89661 0.83155 0.95419 1.22243 0.91344 1.48138 1.03163 0.94398 1.26816 0.97707 0.92022 1.03908 1.70978 1.08040 1.43283 1.33994 0.83743 0.75185 0.78804 0.73032 1.20933 1.16835 1.19639 1.46301 1.15152 1.55061 1.17643 1.19240 0.82149 0.78540 0.87337 1.90653 1.51531 1.60968 1.41326 1.21275 1.06019 1.00943 0.90673 1.22115 0.79581 0.75619 0.88404 1.90743 1.58409 1.54513 1.33582 1.86353 1.33333 1.67827 1.41088 1.23554 1.01089 0.98299 0.82940 1.23543 0.97702 0.85494 1.06893 1.21285 0.87341 0.98718 0.98455 0.84660 1.18927 0.95306 0.99929 0.92705 1.20881 0.98044 0.97225 0.92524 1.21260 0.95918 1.00653 0.97567 1.21412 0.95909 0.97441 0.99160 1.21301 1.00864 1.00699 0.92546 1.21107 0.94989 0.98966 0.98793 0.92539 0.93920 0.93514 0.91926 0.93168 0.93310 0.75533 0.90432 0.91807 0.86204 0.84669 0.85217 0.86517 0.84750 0.84187 0.84399 0.85886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.22 8.53 71.98 0.61 -4.61 16 2 C -0.14 -6.00 5.28 30.59 0.16 -5.84 16 3 C 0.25 11.91 1.82 44.25 0.08 11.99 16 4 H 0.03 1.41 6.26 -2.39 -0.01 1.40 16 5 C -0.61 -33.24 9.01 25.60 0.23 -33.00 16 6 H 0.04 2.20 7.96 -2.91 -0.02 2.17 16 7 C 0.00 -0.22 5.32 84.66 0.45 0.23 16 8 N -0.93 -55.72 13.70 21.45 0.29 -55.43 16 9 Si 1.07 49.61 26.27 68.60 1.80 51.41 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.24 -10.26 5.67 99.48 0.56 -9.70 16 12 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.69 -28.47 4.84 -446.10 -2.16 -30.63 16 14 C 0.54 20.39 5.98 87.66 0.52 20.91 16 15 O -0.56 -23.58 13.40 -3.02 -0.04 -23.62 16 16 C -0.18 -5.42 2.57 -53.68 -0.14 -5.56 16 17 C 0.50 14.51 7.34 71.24 0.52 15.03 16 18 O -0.49 -14.11 11.45 21.96 0.25 -13.85 16 19 O -0.37 -10.57 7.65 -51.46 -0.39 -10.96 16 20 C 0.03 0.71 10.56 113.37 1.20 1.91 16 21 C -0.10 -2.21 9.28 30.60 0.28 -1.93 16 22 C -0.04 -1.00 5.56 -11.53 -0.06 -1.07 16 23 H 0.14 3.54 7.67 -2.39 -0.02 3.52 16 24 C -0.07 -1.68 4.38 -19.87 -0.09 -1.76 16 25 C -0.07 -1.55 6.17 22.27 0.14 -1.41 16 26 C -0.14 -2.72 10.05 22.27 0.22 -2.50 16 27 C -0.12 -2.28 10.05 22.27 0.22 -2.05 16 28 C -0.14 -2.73 10.05 22.27 0.22 -2.51 16 29 C -0.12 -2.81 9.74 22.27 0.22 -2.60 16 30 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.04 1.69 5.63 -2.39 -0.01 1.68 16 32 H 0.05 1.87 7.88 -2.38 -0.02 1.85 16 33 H 0.06 2.83 4.74 -2.39 -0.01 2.82 16 34 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.26 15.51 8.73 -92.71 -0.81 14.70 16 36 H 0.41 16.01 5.68 -92.71 -0.53 15.48 16 37 H 0.08 1.38 8.13 -2.39 -0.02 1.36 16 38 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 39 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.14 2.36 6.18 -2.39 -0.01 2.34 16 41 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.12 2.40 5.77 -2.91 -0.02 2.38 16 43 H 0.13 2.09 8.06 -2.91 -0.02 2.06 16 44 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.14 2.10 8.06 -2.91 -0.02 2.08 16 46 H 0.12 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -67.70 366.39 4.85 -62.85 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.30 Total: 35.00 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 4.80 Total: -14.77 kcal Atomic # 7 Polarization: -84.19 SS G_CDS: -1.87 Total: -86.05 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -0.18 Total: -48.44 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 1.80 Total: 51.41 kcal Total: -67.70 4.85 -62.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399539.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.843 kcal (2) G-P(sol) polarization free energy of solvation -67.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds