Wall clock time and date at job start Tue Mar 31 2020 15:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50707 * 115.55123 * 34.41795 * 16 14 13 18 18 O 1.20824 * 119.99739 * 145.58095 * 17 16 14 19 19 O 1.34220 * 119.99821 * 325.58423 * 17 16 14 20 20 C 1.45204 * 117.00143 * 179.97438 * 19 17 16 21 21 C 1.52997 * 117.50022 * 248.74746 * 16 14 13 22 22 C 1.53002 * 117.49983 * 180.08468 * 16 14 13 23 23 H 1.09000 * 117.50202 * 214.98283 * 22 16 14 24 24 C 1.50702 * 117.49595 * 359.97438 * 22 16 14 25 25 C 1.38232 * 119.99857 * 59.72621 * 24 22 16 26 26 C 1.38244 * 119.99941 * 179.76463 * 25 24 22 27 27 C 1.38232 * 119.99821 * 0.48432 * 26 25 24 28 28 C 1.38238 * 119.99915 * 359.78913 * 27 26 25 29 29 C 1.38233 * 120.00008 * 239.99602 * 24 22 16 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 37 37 H 1.09002 * 109.46767 * 59.99942 * 20 19 17 38 38 H 1.08996 * 109.47631 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46787 * 300.00185 * 20 19 17 40 40 H 1.08997 * 117.49854 * 359.97438 * 21 16 14 41 41 H 1.08998 * 117.50158 * 145.02104 * 21 16 14 42 42 H 1.07999 * 120.00546 * 359.97438 * 25 24 22 43 43 H 1.07999 * 119.99869 * 180.24801 * 26 25 24 44 44 H 1.08000 * 120.00175 * 179.76836 * 27 26 25 45 45 H 1.07999 * 120.00104 * 179.97438 * 28 27 26 46 46 H 1.08000 * 119.99806 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 1.1478 4.0374 3.3939 18 8 0.9193 5.0520 4.0088 19 8 2.3916 3.5335 3.3688 20 6 3.4123 4.2604 4.1025 21 6 -1.0578 2.6710 3.4911 22 6 -1.3594 3.9606 2.7236 23 1 -1.4738 4.8764 3.3036 24 6 -2.2298 3.8546 1.4979 25 6 -2.5721 2.6118 0.9988 26 6 -3.3745 2.5144 -0.1227 27 6 -3.8264 3.6599 -0.7508 28 6 -3.4794 4.9028 -0.2549 29 6 -2.6813 5.0001 0.8696 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8292 -0.0604 -2.9503 36 1 2.2720 2.1231 1.9978 37 1 3.1371 4.3090 5.1561 38 1 4.3683 3.7470 4.0004 39 1 3.4974 5.2707 3.7022 40 1 -1.4894 1.7457 3.1096 41 1 -0.9739 2.7388 4.5758 42 1 -2.2154 1.7168 1.4868 43 1 -3.6452 1.5434 -0.5103 44 1 -4.4502 3.5839 -1.6291 45 1 -3.8321 5.7977 -0.7458 46 1 -2.4099 5.9710 1.2569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:07 Heat of formation + Delta-G solvation = -58.460238 kcal Electronic energy + Delta-G solvation = -29923.867519 eV Core-core repulsion = 25973.042059 eV Total energy + Delta-G solvation = -3950.825460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.14808 -39.60593 -38.33531 -37.03065 -35.87254 -34.79045 -32.40344 -31.12586 -30.63911 -30.17570 -28.15388 -27.05157 -25.02069 -23.78858 -23.08513 -22.17725 -21.70491 -20.64686 -19.58634 -19.39071 -18.23154 -16.97761 -16.75249 -16.46091 -16.27689 -15.23356 -15.18342 -14.83190 -14.61797 -14.41203 -14.24083 -13.88774 -13.67688 -13.22447 -13.06486 -12.86054 -12.69401 -12.54828 -12.18164 -11.99242 -11.87219 -11.49409 -11.36804 -11.22962 -11.02368 -10.89283 -10.83981 -10.82108 -10.74017 -10.54417 -10.40290 -10.30096 -10.13284 -9.62981 -9.24227 -9.03968 -8.50841 -8.44341 -7.88700 -7.76630 -6.11290 -4.19898 1.54364 1.84981 2.04309 2.55260 3.14845 3.25310 3.30833 3.31624 3.76762 3.91017 4.20380 4.35573 4.47869 4.69823 4.77034 5.00715 5.08996 5.16262 5.19272 5.20244 5.32706 5.35128 5.35705 5.52122 5.56156 5.71017 5.80137 5.90802 6.06420 6.29212 6.32836 6.37140 6.38413 6.44604 6.63579 6.80436 6.88273 6.96324 7.02771 7.19040 7.36106 7.37746 7.46199 7.62443 7.66297 7.76937 7.92104 8.18927 8.70943 8.78408 9.15259 9.47091 10.94072 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.004939 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.282138 B = 5667.465122 C = 7426.124588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.531 4.531 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.693 5.693 14 C 0.534 3.466 15 O -0.518 6.518 16 C -0.170 4.170 17 C 0.507 3.493 18 O -0.505 6.505 19 O -0.347 6.347 20 C 0.038 3.962 21 C -0.122 4.122 22 C -0.044 4.044 23 H 0.130 0.870 24 C -0.052 4.052 25 C -0.036 4.036 26 C -0.127 4.127 27 C -0.115 4.115 28 C -0.136 4.136 29 C -0.106 4.106 30 H 0.051 0.949 31 H 0.037 0.963 32 H 0.021 0.979 33 H 0.030 0.970 34 H 0.099 0.901 35 H 0.264 0.736 36 H 0.395 0.605 37 H 0.062 0.938 38 H 0.106 0.894 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.921 4.906 10.973 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.570 4.570 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.344 5.344 14 C 0.316 3.684 15 O -0.396 6.396 16 C -0.175 4.175 17 C 0.350 3.650 18 O -0.393 6.393 19 O -0.263 6.263 20 C -0.056 4.056 21 C -0.160 4.160 22 C -0.062 4.062 23 H 0.148 0.852 24 C -0.053 4.053 25 C -0.054 4.054 26 C -0.145 4.145 27 C -0.134 4.134 28 C -0.154 4.154 29 C -0.124 4.124 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.232 0.768 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.083 0.917 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.417 5.070 10.290 14.842 hybrid contribution 1.821 0.144 0.273 1.847 sum -7.596 5.214 10.564 14.017 Atomic orbital electron populations 1.21847 0.98405 0.97928 1.01102 1.21927 0.92604 0.99800 1.02278 1.18793 0.94220 0.89109 0.80833 0.93282 1.21191 0.90749 1.38854 1.06190 0.92151 1.24867 0.98462 0.94874 0.95397 1.69882 1.35135 1.37702 1.09322 0.86541 0.85055 0.78268 0.77425 1.20171 1.21166 1.20258 1.46708 1.14202 1.54542 1.18926 1.18766 0.83666 0.79655 0.86308 1.90765 1.50343 1.59894 1.38598 1.21472 0.89090 1.07388 0.99522 1.22148 0.82793 0.82496 0.77532 1.90635 1.83448 1.23902 1.41341 1.86395 1.18431 1.53557 1.67905 1.23335 0.89244 0.97384 0.95606 1.23318 0.95964 0.98181 0.98505 1.21192 0.89614 0.98240 0.97174 0.85185 1.18667 0.97419 0.93847 0.95320 1.20707 0.93084 0.96415 0.95226 1.20931 0.99073 0.98117 0.96399 1.21017 1.00211 0.92801 0.99322 1.20889 1.00117 0.97282 0.97078 1.20757 0.98195 0.97343 0.96117 0.93028 0.94430 0.95952 0.95072 0.88286 0.92564 0.76768 0.91917 0.87546 0.91734 0.86310 0.86885 0.86833 0.86689 0.86890 0.86803 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.52 16 2 C -0.13 -3.00 5.45 -26.74 -0.15 -3.14 16 3 C 0.27 6.71 2.24 -69.08 -0.15 6.55 16 4 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -13.89 8.73 -34.44 -0.30 -14.19 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.43 11.30 55.43 0.63 -23.81 16 9 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 13 N -0.69 -14.42 4.83 -54.94 -0.27 -14.68 16 14 C 0.53 10.29 5.80 -10.99 -0.06 10.23 16 15 O -0.52 -10.94 8.81 5.56 0.05 -10.89 16 16 C -0.17 -2.66 2.56 -156.81 -0.40 -3.06 16 17 C 0.51 7.96 7.49 36.01 0.27 8.23 16 18 O -0.51 -8.31 16.01 -18.75 -0.30 -8.61 16 19 O -0.35 -5.19 7.65 -39.23 -0.30 -5.49 16 20 C 0.04 0.42 10.56 101.05 1.07 1.49 16 21 C -0.12 -1.48 9.28 -26.69 -0.25 -1.73 16 22 C -0.04 -0.61 5.56 -91.73 -0.51 -1.11 16 23 H 0.13 1.66 7.67 -51.93 -0.40 1.27 16 24 C -0.05 -0.79 4.38 -104.62 -0.46 -1.25 16 25 C -0.04 -0.56 6.16 -39.58 -0.24 -0.80 16 26 C -0.13 -1.90 10.05 -39.58 -0.40 -2.30 16 27 C -0.12 -1.62 10.05 -39.58 -0.40 -2.01 16 28 C -0.14 -1.87 10.05 -39.58 -0.40 -2.27 16 29 C -0.11 -1.54 9.74 -39.58 -0.39 -1.92 16 30 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 31 H 0.04 0.74 5.22 -51.93 -0.27 0.46 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.10 2.60 5.95 -51.93 -0.31 2.29 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.40 7.68 5.70 -40.82 -0.23 7.44 16 37 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 38 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 40 H 0.12 1.38 6.19 -51.93 -0.32 1.06 16 41 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.11 1.71 5.34 -52.49 -0.28 1.43 16 43 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 369.96 15.07 5.58 5.58 Total: -1.00 -30.34 369.96 -8.57 -38.90 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -6.38 Total: 11.71 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -2.55 Total: -8.13 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: 0.36 Total: -38.49 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.55 Total: -24.99 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.34 -8.57 -38.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.557 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds