Wall clock time and date at job start Tue Mar 31 2020 15:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47402 * 60.00067 * 9 7 5 11 11 H 1.48504 * 109.47024 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46769 * 299.99484 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21276 * 120.00121 * 0.02562 * 14 13 3 16 16 C 1.50698 * 119.99878 * 179.97438 * 14 13 3 17 17 C 1.50707 * 115.55123 * 34.41795 * 16 14 13 18 18 O 1.20824 * 119.99739 * 145.58095 * 17 16 14 19 19 O 1.34220 * 119.99821 * 325.58423 * 17 16 14 20 20 C 1.45204 * 117.00143 * 179.97438 * 19 17 16 21 21 C 1.52997 * 117.50022 * 248.74746 * 16 14 13 22 22 C 1.53002 * 117.49983 * 180.08468 * 16 14 13 23 23 H 1.09000 * 117.50202 * 214.98283 * 22 16 14 24 24 C 1.50702 * 117.49595 * 359.97438 * 22 16 14 25 25 C 1.38232 * 119.99857 * 59.72621 * 24 22 16 26 26 C 1.38244 * 119.99941 * 179.76463 * 25 24 22 27 27 C 1.38232 * 119.99821 * 0.48432 * 26 25 24 28 28 C 1.38238 * 119.99915 * 359.78913 * 27 26 25 29 29 C 1.38233 * 120.00008 * 239.99602 * 24 22 16 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 37 37 H 1.09002 * 109.46767 * 59.99942 * 20 19 17 38 38 H 1.08996 * 109.47631 * 179.97438 * 20 19 17 39 39 H 1.09002 * 109.46787 * 300.00185 * 20 19 17 40 40 H 1.08997 * 117.49854 * 359.97438 * 21 16 14 41 41 H 1.08998 * 117.50158 * 145.02104 * 21 16 14 42 42 H 1.07999 * 120.00546 * 359.97438 * 25 24 22 43 43 H 1.07999 * 119.99869 * 180.24801 * 26 25 24 44 44 H 1.08000 * 120.00175 * 179.76836 * 27 26 25 45 45 H 1.07999 * 120.00104 * 179.97438 * 28 27 26 46 46 H 1.08000 * 119.99806 * 0.02562 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5968 0.1453 -0.2344 11 1 6.3978 0.2168 -2.6505 12 1 6.5004 2.2800 -1.3810 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3395 2.6319 0.4345 16 6 0.0363 3.3376 2.6549 17 6 1.1478 4.0374 3.3939 18 8 0.9193 5.0520 4.0088 19 8 2.3916 3.5335 3.3688 20 6 3.4123 4.2604 4.1025 21 6 -1.0578 2.6710 3.4911 22 6 -1.3594 3.9606 2.7236 23 1 -1.4738 4.8764 3.3036 24 6 -2.2298 3.8546 1.4979 25 6 -2.5721 2.6118 0.9988 26 6 -3.3745 2.5144 -0.1227 27 6 -3.8264 3.6599 -0.7508 28 6 -3.4794 4.9028 -0.2549 29 6 -2.6813 5.0001 0.8696 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8292 -0.0604 -2.9503 36 1 2.2720 2.1231 1.9978 37 1 3.1371 4.3090 5.1561 38 1 4.3683 3.7470 4.0004 39 1 3.4974 5.2707 3.7022 40 1 -1.4894 1.7457 3.1096 41 1 -0.9739 2.7388 4.5758 42 1 -2.2154 1.7168 1.4868 43 1 -3.6452 1.5434 -0.5103 44 1 -4.4502 3.5839 -1.6291 45 1 -3.8321 5.7977 -0.7458 46 1 -2.4099 5.9710 1.2569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399540.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:06 Heat of formation + Delta-G solvation = -74.225010 kcal Electronic energy + Delta-G solvation = -29924.551130 eV Core-core repulsion = 25973.042059 eV Total energy + Delta-G solvation = -3951.509072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36613 -40.83226 -39.69081 -38.21159 -37.18344 -36.44193 -34.26304 -32.84221 -31.75010 -31.38891 -29.31136 -28.74532 -26.31950 -24.91214 -24.80984 -23.39742 -23.04017 -21.82338 -21.29223 -20.78145 -19.60520 -18.26329 -18.09260 -17.84568 -17.49017 -17.01242 -16.56628 -16.18524 -15.94581 -15.88228 -15.59156 -15.11907 -14.91896 -14.55637 -14.28660 -14.24342 -14.01365 -13.85639 -13.61153 -13.39906 -13.14980 -13.04744 -12.88324 -12.85475 -12.64998 -12.47855 -12.16436 -12.02873 -11.96774 -11.87483 -11.83341 -11.65551 -11.55994 -11.45791 -11.01668 -10.68769 -10.48979 -9.64511 -9.45971 -9.08958 -8.13385 -6.29659 0.41708 0.72550 0.88555 1.44399 1.45603 1.46340 1.53934 1.80395 2.33946 2.54449 2.60196 3.08037 3.15847 3.36633 3.60453 3.63139 3.85422 3.99621 4.21324 4.26993 4.28180 4.33989 4.34182 4.54535 4.56288 4.59213 4.64133 4.69260 4.72814 4.82877 4.84526 5.01401 5.12407 5.19599 5.24702 5.30126 5.32996 5.50286 5.60929 5.67510 5.70684 5.77801 5.83992 5.86146 5.99115 6.21915 6.28962 6.50951 6.77852 7.04633 7.36690 7.61739 8.91389 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.010704 B = 0.004939 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.282138 B = 5667.465122 C = 7426.124588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.120 4.120 3 C 0.283 3.717 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.965 3.035 10 H -0.264 1.264 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.696 5.696 14 C 0.531 3.469 15 O -0.539 6.539 16 C -0.188 4.188 17 C 0.510 3.490 18 O -0.516 6.516 19 O -0.361 6.361 20 C 0.030 3.970 21 C -0.095 4.095 22 C -0.041 4.041 23 H 0.143 0.857 24 C -0.066 4.066 25 C -0.050 4.050 26 C -0.145 4.145 27 C -0.125 4.125 28 C -0.142 4.142 29 C -0.120 4.120 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.070 0.930 35 H 0.264 0.736 36 H 0.403 0.597 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.124 0.876 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.134 0.866 45 H 0.137 0.863 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.749 5.292 12.757 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.159 4.159 3 C 0.180 3.820 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.790 3.210 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.316 3.684 15 O -0.418 6.418 16 C -0.192 4.192 17 C 0.354 3.646 18 O -0.405 6.405 19 O -0.277 6.277 20 C -0.063 4.063 21 C -0.132 4.132 22 C -0.059 4.059 23 H 0.161 0.839 24 C -0.066 4.066 25 C -0.068 4.068 26 C -0.163 4.163 27 C -0.143 4.143 28 C -0.160 4.160 29 C -0.138 4.138 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.241 0.759 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.080 0.920 40 H 0.142 0.858 41 H 0.163 0.837 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.151 0.849 45 H 0.155 0.845 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.249 5.466 12.109 16.188 hybrid contribution 1.728 0.069 -0.314 1.758 sum -7.521 5.535 11.795 15.044 Atomic orbital electron populations 1.21662 0.96440 0.99065 1.00503 1.21761 0.94273 0.98847 1.01035 1.18346 0.93427 0.89237 0.81033 0.98306 1.21532 0.91694 1.38738 1.06490 0.91551 1.25699 1.02966 0.94468 0.95045 1.70036 1.36930 1.38432 1.09782 0.85509 0.79591 0.78333 0.77576 1.18842 1.21229 1.19902 1.46515 1.15271 1.55183 1.17836 1.19282 0.82678 0.78944 0.87490 1.90769 1.50754 1.60377 1.39885 1.21324 0.90129 1.09192 0.98588 1.22069 0.83000 0.82206 0.77310 1.90624 1.83643 1.24141 1.42081 1.86360 1.18705 1.54237 1.68429 1.23638 0.89164 0.97274 0.96176 1.23556 0.92293 0.97555 0.99811 1.21295 0.87733 0.99752 0.97149 0.83912 1.18882 0.97787 0.93933 0.96020 1.20799 0.93641 0.96671 0.95713 1.21189 0.99444 0.99003 0.96660 1.21336 1.00319 0.92683 0.99922 1.21242 0.99642 0.98171 0.96912 1.21078 0.98315 0.97949 0.96435 0.95370 0.93207 0.93825 0.94405 0.91191 0.92696 0.75888 0.90275 0.85532 0.92021 0.85800 0.83748 0.86998 0.86002 0.84851 0.84482 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.03 8.51 71.98 0.61 -4.42 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.60 16 3 C 0.28 14.32 2.24 44.24 0.10 14.42 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.07 16 5 C -0.55 -28.89 8.73 25.60 0.22 -28.67 16 6 H 0.07 3.34 7.74 -2.91 -0.02 3.32 16 7 C 0.02 0.98 5.29 84.65 0.45 1.43 16 8 N -0.91 -51.85 11.30 21.45 0.24 -51.61 16 9 Si 0.96 41.89 29.54 68.60 2.03 43.92 16 10 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 N -0.70 -29.12 4.83 -446.11 -2.16 -31.28 16 14 C 0.53 20.47 5.80 87.66 0.51 20.98 16 15 O -0.54 -23.12 8.81 -3.02 -0.03 -23.14 16 16 C -0.19 -5.61 2.56 -53.67 -0.14 -5.75 16 17 C 0.51 15.23 7.49 71.24 0.53 15.77 16 18 O -0.52 -16.02 16.01 21.97 0.35 -15.67 16 19 O -0.36 -10.31 7.65 -51.32 -0.39 -10.70 16 20 C 0.03 0.62 10.56 113.37 1.20 1.82 16 21 C -0.10 -2.08 9.28 30.62 0.28 -1.79 16 22 C -0.04 -1.07 5.56 -11.51 -0.06 -1.13 16 23 H 0.14 3.34 7.67 -2.39 -0.02 3.32 16 24 C -0.07 -1.95 4.38 -19.87 -0.09 -2.03 16 25 C -0.05 -1.54 6.16 22.27 0.14 -1.40 16 26 C -0.14 -4.31 10.05 22.27 0.22 -4.09 16 27 C -0.12 -3.41 10.05 22.27 0.22 -3.18 16 28 C -0.14 -3.76 10.05 22.27 0.22 -3.54 16 29 C -0.12 -3.35 9.74 22.27 0.22 -3.14 16 30 H 0.03 1.29 7.85 -2.39 -0.02 1.27 16 31 H 0.05 1.95 5.22 -2.39 -0.01 1.93 16 32 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.07 3.79 5.95 -2.39 -0.01 3.78 16 35 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 36 H 0.40 15.49 5.70 -92.71 -0.53 14.97 16 37 H 0.08 1.36 8.13 -2.39 -0.02 1.34 16 38 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 40 H 0.12 2.61 6.19 -2.39 -0.01 2.59 16 41 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.11 3.34 5.34 -2.91 -0.02 3.32 16 43 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 44 H 0.13 2.97 8.06 -2.91 -0.02 2.94 16 45 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 46 H 0.13 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -66.65 369.96 5.33 -61.32 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: 0.48 Total: 37.50 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 4.81 Total: -10.34 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -1.91 Total: -82.89 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.07 Total: -49.51 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -66.65 5.33 -61.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399540.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.903 kcal (2) G-P(sol) polarization free energy of solvation -66.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds