Wall clock time and date at job start Tue Mar 31 2020 15:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00578 * 180.02562 * 14 13 3 17 17 C 1.50698 * 115.54848 * 34.33071 * 16 14 13 18 18 O 1.20830 * 120.00296 * 145.58111 * 17 16 14 19 19 O 1.34235 * 120.00143 * 325.58312 * 17 16 14 20 20 C 1.45192 * 116.99937 * 180.02562 * 19 17 16 21 21 C 1.52999 * 117.50050 * 248.62255 * 16 14 13 22 22 C 1.52995 * 117.50096 * 179.97438 * 16 14 13 23 23 H 1.09006 * 117.49990 * 359.97438 * 22 16 14 24 24 C 1.50708 * 117.49983 * 214.98072 * 22 16 14 25 25 C 1.38228 * 119.99882 * 299.72757 * 24 22 16 26 26 C 1.38235 * 120.00207 * 179.81111 * 25 24 22 27 27 C 1.38236 * 119.99593 * 0.39789 * 26 25 24 28 28 C 1.38242 * 120.00305 * 359.85149 * 27 26 25 29 29 C 1.38229 * 119.99523 * 359.96317 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 37 37 H 1.08997 * 109.47829 * 60.00153 * 20 19 17 38 38 H 1.09002 * 109.47380 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.47422 * 299.99611 * 20 19 17 40 40 H 1.09000 * 117.49639 * 359.97438 * 21 16 14 41 41 H 1.09005 * 117.49739 * 145.01944 * 21 16 14 42 42 H 1.07998 * 120.00423 * 359.97438 * 25 24 22 43 43 H 1.07997 * 120.00440 * 180.22959 * 26 25 24 44 44 H 1.08001 * 120.00071 * 179.83810 * 27 26 25 45 45 H 1.07996 * 120.00194 * 179.97438 * 28 27 26 46 46 H 1.07998 * 119.99855 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3387 2.6543 17 6 1.1486 4.0375 3.3933 18 8 0.9211 5.0527 4.0078 19 8 2.3919 3.5321 3.3690 20 6 3.4128 4.2575 4.1036 21 6 -1.0593 2.6742 3.4900 22 6 -1.3582 3.9639 2.7221 23 1 -1.9874 3.8879 1.8352 24 6 -1.5148 5.2305 3.5235 25 6 -1.2197 5.2349 4.8739 26 6 -1.3596 6.3977 5.6083 27 6 -1.8026 7.5540 4.9938 28 6 -2.1026 7.5484 3.6444 29 6 -1.9590 6.3866 2.9093 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0604 -2.9502 36 1 2.2719 2.1232 1.9977 37 1 3.1371 4.3061 5.1570 38 1 4.3684 3.7430 4.0020 39 1 3.4995 5.2678 3.7037 40 1 -1.4923 1.7496 3.1084 41 1 -0.9759 2.7423 4.5748 42 1 -0.8773 4.3305 5.3548 43 1 -1.1256 6.4020 6.6626 44 1 -1.9144 8.4619 5.5681 45 1 -2.4491 8.4517 3.1644 46 1 -2.1938 6.3821 1.8552 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:14 Heat of formation + Delta-G solvation = -59.428192 kcal Electronic energy + Delta-G solvation = -29456.893874 eV Core-core repulsion = 25506.026441 eV Total energy + Delta-G solvation = -3950.867433 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.23667 -39.29224 -38.85917 -36.98479 -35.83333 -34.85908 -32.38776 -31.13427 -30.86158 -30.47348 -28.13897 -27.05884 -25.02413 -23.93369 -23.06077 -22.48121 -21.76275 -20.58454 -19.71977 -19.43196 -18.26097 -17.20003 -16.75728 -16.34487 -15.97822 -15.50682 -15.24170 -14.99157 -14.79180 -14.47862 -14.34449 -13.95963 -13.74092 -13.29267 -13.17848 -13.07982 -12.70074 -12.61343 -12.15133 -12.09321 -11.89725 -11.50933 -11.40088 -11.22711 -11.14822 -11.03488 -10.86901 -10.80407 -10.77124 -10.69301 -10.37738 -10.30547 -10.15427 -9.63838 -9.12011 -9.04289 -8.73438 -8.49640 -8.33724 -7.82727 -6.11828 -4.20626 1.30947 1.52986 2.09411 2.57126 3.11753 3.25384 3.30805 3.31689 3.63721 3.83828 4.10169 4.34152 4.43904 4.65070 4.79857 4.84984 4.93616 5.03976 5.12441 5.14324 5.19486 5.21263 5.31503 5.50183 5.53418 5.55172 5.69376 5.78155 5.94444 6.05020 6.12626 6.36427 6.38033 6.44128 6.53796 6.58189 6.64138 6.70023 7.02904 7.08359 7.18259 7.35374 7.43177 7.62406 7.71524 7.77263 7.90483 8.17895 8.67310 8.76775 9.11188 9.46138 10.93611 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.003555 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.229338 B = 7873.373960 C = 8691.995913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.049 0.951 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.691 5.691 14 C 0.540 3.460 15 O -0.540 6.540 16 C -0.165 4.165 17 C 0.499 3.501 18 O -0.484 6.484 19 O -0.351 6.351 20 C 0.040 3.960 21 C -0.121 4.121 22 C -0.048 4.048 23 H 0.141 0.859 24 C -0.051 4.051 25 C -0.061 4.061 26 C -0.127 4.127 27 C -0.120 4.120 28 C -0.129 4.129 29 C -0.104 4.104 30 H 0.023 0.977 31 H 0.050 0.950 32 H 0.037 0.963 33 H 0.032 0.968 34 H 0.100 0.900 35 H 0.265 0.735 36 H 0.397 0.603 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 8.122 15.314 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.067 0.933 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.341 5.341 14 C 0.322 3.678 15 O -0.419 6.419 16 C -0.170 4.170 17 C 0.341 3.659 18 O -0.371 6.371 19 O -0.267 6.267 20 C -0.054 4.054 21 C -0.158 4.158 22 C -0.067 4.067 23 H 0.158 0.842 24 C -0.051 4.051 25 C -0.079 4.079 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.147 4.147 29 C -0.122 4.122 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.051 0.949 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.235 0.765 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.082 0.918 40 H 0.140 0.860 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.868 8.289 14.635 18.568 hybrid contribution 1.715 0.126 0.309 1.747 sum -6.153 8.415 14.944 18.220 Atomic orbital electron populations 1.21843 0.98384 0.98082 1.01149 1.21940 0.92600 0.99733 1.02393 1.18837 0.94340 0.89205 0.80781 0.93281 1.21189 0.90655 1.38948 1.06270 0.92066 1.24873 0.98538 0.94839 0.95375 1.69881 1.35176 1.37642 1.09323 0.86526 0.84947 0.78288 0.77440 1.20154 1.21150 1.20221 1.46649 1.14094 1.54344 1.19034 1.18716 0.83594 0.79429 0.86059 1.90686 1.51816 1.60546 1.38839 1.21447 0.89116 1.07003 0.99411 1.22231 0.82751 0.82885 0.78019 1.90746 1.82406 1.23285 1.40616 1.86386 1.18598 1.53769 1.67936 1.23286 0.89209 0.97364 0.95516 1.23313 0.96008 0.97955 0.98533 1.21260 0.92847 0.91390 1.01191 0.84167 1.18884 0.99658 0.93187 0.93361 1.20730 0.95889 0.97947 0.93288 1.20929 1.01035 0.93079 0.99512 1.21045 0.99904 0.97875 0.94996 1.20996 1.01579 0.97800 0.94360 1.20906 0.99388 0.92217 0.99718 0.95768 0.93097 0.94410 0.94940 0.88187 0.92525 0.76540 0.92034 0.87719 0.91819 0.86033 0.87109 0.87080 0.86698 0.86695 0.86426 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.51 37.16 0.32 -2.65 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.20 16 3 C 0.27 6.74 2.24 -69.08 -0.15 6.58 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 13 N -0.69 -14.59 4.83 -54.94 -0.27 -14.86 16 14 C 0.54 10.69 5.95 -10.99 -0.07 10.62 16 15 O -0.54 -12.10 13.39 5.56 0.07 -12.03 16 16 C -0.17 -2.59 2.56 -156.82 -0.40 -2.99 16 17 C 0.50 7.74 7.36 36.00 0.26 8.00 16 18 O -0.48 -7.64 11.49 -18.75 -0.22 -7.85 16 19 O -0.35 -5.24 7.65 -39.27 -0.30 -5.54 16 20 C 0.04 0.45 10.55 101.05 1.07 1.52 16 21 C -0.12 -1.47 9.28 -26.71 -0.25 -1.72 16 22 C -0.05 -0.67 5.56 -91.75 -0.51 -1.18 16 23 H 0.14 1.98 7.67 -51.93 -0.40 1.58 16 24 C -0.05 -0.68 4.35 -104.62 -0.46 -1.14 16 25 C -0.06 -0.76 6.20 -39.59 -0.25 -1.01 16 26 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 27 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 28 C -0.13 -1.50 10.05 -39.58 -0.40 -1.90 16 29 C -0.10 -1.35 9.74 -39.58 -0.39 -1.73 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.17 7.85 -51.93 -0.41 0.76 16 32 H 0.04 0.77 5.64 -51.93 -0.29 0.48 16 33 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 2.64 5.95 -51.93 -0.31 2.33 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.40 7.77 5.70 -40.82 -0.23 7.54 16 37 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 40 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.11 1.11 6.17 -51.93 -0.32 0.79 16 42 H 0.11 1.29 5.80 -52.49 -0.30 0.98 16 43 H 0.11 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.11 1.00 8.06 -52.49 -0.42 0.58 16 45 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 46 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -30.62 370.92 -8.49 -39.12 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.43 Total: 10.97 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -2.55 Total: -6.99 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 0.36 Total: -38.67 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.44 Total: -25.42 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.62 -8.49 -39.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.312 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds