Wall clock time and date at job start Tue Mar 31 2020 15:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08996 * 109.46945 * 304.99450 * 3 2 1 5 5 C 1.50703 * 109.47148 * 184.99915 * 3 2 1 6 6 H 1.07998 * 119.99948 * 239.99959 * 5 3 2 7 7 C 1.37883 * 119.99901 * 59.99690 * 5 3 2 8 8 N 1.31514 * 119.99866 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99806 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47093 * 60.00099 * 9 7 5 11 11 H 1.48503 * 109.47086 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47388 * 300.00253 * 9 7 5 13 13 N 1.46490 * 109.47115 * 64.99762 * 3 2 1 14 14 C 1.34777 * 120.00429 * 275.00047 * 13 3 2 15 15 O 1.21283 * 119.99304 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00578 * 180.02562 * 14 13 3 17 17 C 1.50698 * 115.54848 * 34.33071 * 16 14 13 18 18 O 1.20830 * 120.00296 * 145.58111 * 17 16 14 19 19 O 1.34235 * 120.00143 * 325.58312 * 17 16 14 20 20 C 1.45192 * 116.99937 * 180.02562 * 19 17 16 21 21 C 1.52999 * 117.50050 * 248.62255 * 16 14 13 22 22 C 1.52995 * 117.50096 * 179.97438 * 16 14 13 23 23 H 1.09006 * 117.49990 * 359.97438 * 22 16 14 24 24 C 1.50708 * 117.49983 * 214.98072 * 22 16 14 25 25 C 1.38228 * 119.99882 * 299.72757 * 24 22 16 26 26 C 1.38235 * 120.00207 * 179.81111 * 25 24 22 27 27 C 1.38236 * 119.99593 * 0.39789 * 26 25 24 28 28 C 1.38242 * 120.00305 * 359.85149 * 27 26 25 29 29 C 1.38229 * 119.99523 * 359.96317 * 28 27 26 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 0.97000 * 119.99365 * 179.97438 * 8 7 5 36 36 H 0.97001 * 120.00176 * 95.00254 * 13 3 2 37 37 H 1.08997 * 109.47829 * 60.00153 * 20 19 17 38 38 H 1.09002 * 109.47380 * 179.97438 * 20 19 17 39 39 H 1.09001 * 109.47422 * 299.99611 * 20 19 17 40 40 H 1.09000 * 117.49639 * 359.97438 * 21 16 14 41 41 H 1.09005 * 117.49739 * 145.01944 * 21 16 14 42 42 H 1.07998 * 120.00423 * 359.97438 * 25 24 22 43 43 H 1.07997 * 120.00440 * 180.22959 * 26 25 24 44 44 H 1.08001 * 120.00071 * 179.83810 * 27 26 25 45 45 H 1.07996 * 120.00194 * 179.97438 * 28 27 26 46 46 H 1.07998 * 119.99855 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3817 10 1 6.5975 0.1474 -0.2348 11 1 6.3979 0.2166 -2.6503 12 1 6.4995 2.2815 -1.3821 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6644 1.3669 15 8 -0.3396 2.6319 0.4343 16 6 0.0366 3.3387 2.6543 17 6 1.1486 4.0375 3.3933 18 8 0.9211 5.0527 4.0078 19 8 2.3919 3.5321 3.3690 20 6 3.4128 4.2575 4.1036 21 6 -1.0593 2.6742 3.4900 22 6 -1.3582 3.9639 2.7221 23 1 -1.9874 3.8879 1.8352 24 6 -1.5148 5.2305 3.5235 25 6 -1.2197 5.2349 4.8739 26 6 -1.3596 6.3977 5.6083 27 6 -1.8026 7.5540 4.9938 28 6 -2.1026 7.5484 3.6444 29 6 -1.9590 6.3866 2.9093 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8293 -0.0604 -2.9502 36 1 2.2719 2.1232 1.9977 37 1 3.1371 4.3061 5.1570 38 1 4.3684 3.7430 4.0020 39 1 3.4995 5.2678 3.7037 40 1 -1.4923 1.7496 3.1084 41 1 -0.9759 2.7423 4.5748 42 1 -0.8773 4.3305 5.3548 43 1 -1.1256 6.4020 6.6626 44 1 -1.9144 8.4619 5.5681 45 1 -2.4491 8.4517 3.1644 46 1 -2.1938 6.3821 1.8552 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399542.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:13 Heat of formation + Delta-G solvation = -75.729316 kcal Electronic energy + Delta-G solvation = -29457.600744 eV Core-core repulsion = 25506.026441 eV Total energy + Delta-G solvation = -3951.574303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.41962 -40.55429 -40.09613 -38.13509 -37.14874 -36.53530 -34.29258 -32.84208 -31.78924 -31.53434 -29.32307 -28.75200 -26.33317 -24.90252 -24.86707 -23.50007 -23.06761 -21.82839 -21.25007 -20.89263 -19.66763 -18.35388 -18.19857 -17.50913 -17.39076 -17.07506 -16.56671 -16.32012 -16.15886 -15.92686 -15.59920 -15.16811 -14.94947 -14.57309 -14.32868 -14.24935 -14.08943 -13.84453 -13.67644 -13.43466 -13.16168 -12.99579 -12.95542 -12.87811 -12.64773 -12.46743 -12.17827 -12.09977 -12.06711 -11.86984 -11.80464 -11.67013 -11.54374 -11.46075 -11.04785 -10.72302 -10.50063 -9.65774 -9.63007 -9.29021 -8.14504 -6.31354 0.34698 0.61601 0.97457 1.43839 1.45619 1.47027 1.54727 1.72807 2.30105 2.50239 2.55049 3.05148 3.14803 3.32305 3.55513 3.69002 3.74515 3.94905 4.17832 4.21378 4.29688 4.31093 4.35482 4.51374 4.52399 4.56131 4.61243 4.67145 4.73388 4.79045 4.80692 4.97307 5.08641 5.16256 5.23442 5.26661 5.28586 5.46328 5.57379 5.62532 5.64998 5.70298 5.76496 5.82009 5.94130 6.18584 6.20859 6.59492 6.75328 6.95130 7.33822 7.52961 8.90589 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.017352 B = 0.003555 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.229338 B = 7873.373960 C = 8691.995913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.278 3.722 4 H -0.001 1.001 5 C -0.548 4.548 6 H 0.068 0.932 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.691 5.691 14 C 0.538 3.462 15 O -0.572 6.572 16 C -0.183 4.183 17 C 0.501 3.499 18 O -0.488 6.488 19 O -0.366 6.366 20 C 0.034 3.966 21 C -0.093 4.093 22 C -0.046 4.046 23 H 0.130 0.870 24 C -0.067 4.067 25 C -0.069 4.069 26 C -0.134 4.134 27 C -0.122 4.122 28 C -0.136 4.136 29 C -0.125 4.125 30 H 0.048 0.952 31 H 0.026 0.974 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.265 0.735 36 H 0.406 0.594 37 H 0.078 0.922 38 H 0.124 0.876 39 H 0.058 0.942 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.121 0.879 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.137 0.863 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 8.641 18.020 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.174 3.826 4 H 0.017 0.983 5 C -0.586 4.586 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.342 5.342 14 C 0.323 3.677 15 O -0.453 6.453 16 C -0.188 4.188 17 C 0.344 3.656 18 O -0.375 6.375 19 O -0.283 6.283 20 C -0.059 4.059 21 C -0.130 4.130 22 C -0.065 4.065 23 H 0.147 0.853 24 C -0.067 4.067 25 C -0.087 4.087 26 C -0.152 4.152 27 C -0.140 4.140 28 C -0.154 4.154 29 C -0.143 4.143 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.245 0.755 37 H 0.097 0.903 38 H 0.142 0.858 39 H 0.077 0.923 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.139 0.861 43 H 0.155 0.845 44 H 0.159 0.841 45 H 0.154 0.846 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.354 8.820 17.380 20.831 hybrid contribution 1.518 0.046 -0.529 1.608 sum -5.836 8.866 16.851 19.915 Atomic orbital electron populations 1.21687 0.96697 0.99369 1.00386 1.21780 0.94048 0.98775 1.01383 1.18443 0.93762 0.89398 0.80951 0.98315 1.21519 0.91425 1.38997 1.06692 0.91354 1.25729 1.03186 0.94358 0.94962 1.70034 1.37049 1.38292 1.09785 0.85467 0.79280 0.78386 0.77632 1.18770 1.21156 1.19831 1.46455 1.15058 1.54704 1.18018 1.19283 0.82561 0.78577 0.87232 1.90668 1.52564 1.61562 1.40541 1.21271 0.90371 1.08868 0.98244 1.22089 0.82877 0.82712 0.77963 1.90739 1.82525 1.23192 1.41038 1.86346 1.18887 1.54485 1.68533 1.23566 0.89110 0.97126 0.96109 1.23537 0.92402 0.97410 0.99652 1.21268 0.90970 0.92834 1.01427 0.85264 1.18933 1.00839 0.92958 0.93935 1.20892 0.95952 0.98881 0.92935 1.21274 1.00423 0.92807 1.00662 1.21413 0.98807 0.98849 0.94939 1.21287 1.01264 0.98002 0.94871 1.21102 1.00192 0.92955 1.00044 0.93320 0.95471 0.93514 0.94026 0.90870 0.92586 0.75492 0.90301 0.85789 0.92299 0.85201 0.84328 0.86145 0.84495 0.84122 0.84553 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.51 71.98 0.61 -4.81 16 2 C -0.12 -5.90 5.45 30.60 0.17 -5.73 16 3 C 0.28 14.31 2.24 44.25 0.10 14.41 16 4 H 0.00 -0.06 7.58 -2.39 -0.02 -0.08 16 5 C -0.55 -29.17 8.73 25.60 0.22 -28.95 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.96 5.29 84.66 0.45 1.41 16 8 N -0.91 -51.92 11.29 21.45 0.24 -51.68 16 9 Si 0.97 41.84 29.54 68.60 2.03 43.86 16 10 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 11 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 N -0.69 -29.63 4.83 -446.11 -2.16 -31.79 16 14 C 0.54 21.69 5.95 87.66 0.52 22.22 16 15 O -0.57 -26.61 13.39 -3.04 -0.04 -26.65 16 16 C -0.18 -5.63 2.56 -53.68 -0.14 -5.77 16 17 C 0.50 14.99 7.36 71.24 0.52 15.52 16 18 O -0.49 -14.65 11.49 21.95 0.25 -14.40 16 19 O -0.37 -10.51 7.65 -51.46 -0.39 -10.90 16 20 C 0.03 0.70 10.55 113.37 1.20 1.89 16 21 C -0.09 -2.10 9.28 30.61 0.28 -1.82 16 22 C -0.05 -1.26 5.56 -11.52 -0.06 -1.33 16 23 H 0.13 3.75 7.67 -2.38 -0.02 3.74 16 24 C -0.07 -1.73 4.35 -19.86 -0.09 -1.82 16 25 C -0.07 -1.59 6.20 22.27 0.14 -1.45 16 26 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 27 C -0.12 -2.41 10.05 22.27 0.22 -2.18 16 28 C -0.14 -2.95 10.05 22.27 0.22 -2.73 16 29 C -0.12 -3.18 9.74 22.27 0.22 -2.96 16 30 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.03 1.28 7.85 -2.39 -0.02 1.26 16 32 H 0.05 1.92 5.64 -2.38 -0.01 1.91 16 33 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.07 3.99 5.95 -2.39 -0.01 3.97 16 35 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.41 15.84 5.70 -92.71 -0.53 15.31 16 37 H 0.08 1.36 8.13 -2.39 -0.02 1.34 16 38 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 40 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 41 H 0.14 2.36 6.17 -2.38 -0.01 2.34 16 42 H 0.12 2.45 5.80 -2.91 -0.02 2.44 16 43 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 45 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 46 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -67.74 370.92 5.22 -62.52 By element: Atomic # 1 Polarization: 35.18 SS G_CDS: 0.47 Total: 35.66 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 4.81 Total: -6.62 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -1.91 Total: -83.47 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -0.18 Total: -51.96 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -67.74 5.22 -62.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399542.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.211 kcal (2) G-P(sol) polarization free energy of solvation -67.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds