Wall clock time and date at job start Tue Mar 31 2020 15:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 H 1.09004 * 109.46977 * 305.75791 * 3 2 1 5 5 C 1.50704 * 109.47107 * 185.76079 * 3 2 1 6 6 H 1.07994 * 119.99752 * 335.20052 * 5 3 2 7 7 C 1.37876 * 119.99617 * 155.20439 * 5 3 2 8 8 N 1.31508 * 120.00318 * 355.31376 * 7 5 3 9 9 Si 1.86801 * 119.99425 * 175.32068 * 7 5 3 10 10 H 1.48503 * 109.47354 * 89.99684 * 9 7 5 11 11 H 1.48501 * 109.47243 * 329.99495 * 9 7 5 12 12 H 1.48499 * 109.46965 * 209.99657 * 9 7 5 13 13 N 1.46501 * 109.47185 * 65.75667 * 3 2 1 14 14 C 1.34773 * 120.00545 * 274.99976 * 13 3 2 15 15 O 1.21284 * 119.99718 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00457 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.50138 * 275.00414 * 16 14 13 18 18 C 1.52902 * 109.50440 * 154.92965 * 16 14 13 19 19 C 1.50665 * 110.27679 * 289.91130 * 18 16 14 20 20 C 1.38089 * 119.89707 * 158.91058 * 19 18 16 21 21 C 1.38321 * 120.14300 * 179.54797 * 20 19 18 22 22 C 1.38389 * 120.46924 * 0.02562 * 21 20 19 23 23 C 1.50699 * 119.97769 * 180.13137 * 22 21 20 24 24 C 1.38019 * 120.04158 * 0.10865 * 22 21 20 25 25 C 1.39395 * 119.66043 * 359.97438 * 24 22 21 26 26 C 1.48132 * 120.39478 * 179.80246 * 25 24 22 27 27 O 1.21470 * 121.44168 * 350.24919 * 26 25 24 28 28 O 1.35757 * 117.10855 * 170.27439 * 26 25 24 29 29 H 1.09004 * 109.47466 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47829 * 300.00118 * 1 2 3 31 31 H 1.09010 * 109.47198 * 60.00449 * 1 2 3 32 32 H 1.08997 * 109.47479 * 239.99711 * 2 1 3 33 33 H 1.08996 * 109.47039 * 119.99740 * 2 1 3 34 34 H 0.97003 * 120.00182 * 5.27407 * 8 7 5 35 35 H 0.97005 * 119.99388 * 95.00119 * 13 3 2 36 36 H 1.09002 * 109.47303 * 59.99794 * 17 16 14 37 37 H 1.09003 * 109.47173 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.47129 * 299.99775 * 17 16 14 39 39 H 1.09006 * 109.32695 * 50.19099 * 18 16 14 40 40 H 1.08996 * 109.33246 * 169.67663 * 18 16 14 41 41 H 1.08011 * 119.93173 * 359.54321 * 20 19 18 42 42 H 1.08005 * 119.76627 * 180.02562 * 21 20 19 43 43 H 1.09004 * 109.47276 * 269.98027 * 23 22 21 44 44 H 1.09003 * 109.47420 * 29.97766 * 23 22 21 45 45 H 1.09002 * 109.47207 * 149.97906 * 23 22 21 46 46 H 1.08004 * 120.16952 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5948 1.9852 -0.8340 5 6 3.5402 1.4449 -0.1426 6 1 4.1135 0.5841 0.1682 7 6 4.1807 2.5462 -0.6698 8 7 3.4778 3.5565 -1.1332 9 14 6.0470 2.6029 -0.7261 10 1 6.5215 2.0229 -2.0082 11 1 6.6005 1.8186 0.4069 12 1 6.5027 4.0124 -0.6218 13 7 1.6680 2.0920 1.2594 14 6 0.4523 2.6584 1.3923 15 8 -0.3341 2.6300 0.4694 16 6 0.0695 3.3259 2.6880 17 6 -0.4746 2.2781 3.6611 18 6 -1.0045 4.3809 2.4209 19 6 -0.4160 5.5465 1.6693 20 6 -1.2407 6.3891 0.9505 21 6 -0.7069 7.4662 0.2662 22 6 0.6551 7.7101 0.2941 23 6 1.2245 8.8885 -0.4530 24 6 1.4922 6.8750 1.0060 25 6 0.9582 5.7875 1.6954 26 6 1.8422 4.8782 2.4611 27 8 3.0516 4.9450 2.3700 28 8 1.2419 3.9667 3.2685 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.5128 3.5615 -1.0350 35 1 2.2968 2.1144 1.9977 36 1 0.2918 1.5270 3.8522 37 1 -0.7509 2.7614 4.5982 38 1 -1.3520 1.7994 3.2263 39 1 -1.8065 3.9378 1.8303 40 1 -1.4100 4.7313 3.3700 41 1 -2.3049 6.2067 0.9223 42 1 -1.3576 8.1216 -0.2937 43 1 1.4844 8.5848 -1.4671 44 1 0.4833 9.6869 -0.4916 45 1 2.1176 9.2464 0.0592 46 1 2.5555 7.0631 1.0287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:38 Heat of formation + Delta-G solvation = -108.565123 kcal Electronic energy + Delta-G solvation = -30687.610464 eV Core-core repulsion = 26734.612294 eV Total energy + Delta-G solvation = -3952.998171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16538 -39.02866 -38.30037 -36.98374 -35.27900 -33.73198 -32.34042 -32.14247 -31.25659 -31.04975 -28.59579 -26.69640 -25.26119 -24.30997 -23.51068 -22.78130 -21.61398 -21.08755 -19.88571 -18.77954 -17.83334 -17.13639 -16.58207 -16.18853 -15.85672 -15.08483 -15.06446 -14.61268 -14.43796 -14.17560 -13.95460 -13.76167 -13.54995 -13.45769 -13.20164 -12.99724 -12.66668 -12.58852 -12.35110 -12.29233 -12.16876 -12.00077 -11.80764 -11.57701 -11.41675 -11.06826 -10.99004 -10.90322 -10.76936 -10.73787 -10.37211 -10.13590 -9.83708 -9.75051 -9.16551 -8.88692 -8.74502 -8.42592 -8.40508 -7.83201 -6.47367 -4.28411 0.84807 1.42651 2.45293 3.09955 3.35218 3.41129 3.46882 3.61357 3.84014 3.98319 4.34591 4.43080 4.47001 4.59524 4.90893 4.93901 5.09978 5.16065 5.30088 5.34202 5.48285 5.51449 5.55636 5.61821 5.67816 5.70027 5.73660 5.89586 5.97756 5.98198 6.02360 6.03434 6.16046 6.21531 6.32319 6.42499 6.57505 6.64343 6.79616 6.92165 6.95862 7.01594 7.11183 7.28282 7.61782 7.79694 7.87274 8.30797 8.58685 8.76496 9.03688 9.50970 10.88757 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009763 B = 0.006484 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.379376 B = 4317.367471 C = 5827.300235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.241 3.759 4 H 0.054 0.946 5 C -0.610 4.610 6 H 0.056 0.944 7 C 0.037 3.963 8 N -0.879 5.879 9 Si 1.070 2.930 10 H -0.287 1.287 11 H -0.286 1.286 12 H -0.282 1.282 13 N -0.687 5.687 14 C 0.475 3.525 15 O -0.542 6.542 16 C 0.102 3.898 17 C -0.135 4.135 18 C -0.095 4.095 19 C -0.036 4.036 20 C -0.123 4.123 21 C -0.087 4.087 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.041 4.041 25 C -0.161 4.161 26 C 0.523 3.477 27 O -0.422 6.422 28 O -0.355 6.355 29 H 0.029 0.971 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.274 0.726 35 H 0.390 0.610 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.405 5.999 7.367 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.142 3.858 4 H 0.072 0.928 5 C -0.649 4.649 6 H 0.074 0.926 7 C -0.173 4.173 8 N -0.512 5.512 9 Si 0.898 3.102 10 H -0.214 1.214 11 H -0.212 1.212 12 H -0.208 1.208 13 N -0.336 5.336 14 C 0.257 3.743 15 O -0.421 6.421 16 C 0.062 3.938 17 C -0.193 4.193 18 C -0.133 4.133 19 C -0.036 4.036 20 C -0.141 4.141 21 C -0.105 4.105 22 C -0.102 4.102 23 C -0.168 4.168 24 C -0.059 4.059 25 C -0.163 4.163 26 C 0.363 3.637 27 O -0.302 6.302 28 O -0.275 6.275 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.225 0.775 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.115 0.885 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.093 0.907 44 H 0.084 0.916 45 H 0.086 0.914 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.990 6.836 6.288 12.927 hybrid contribution -1.058 -0.902 0.804 1.606 sum -10.048 5.934 7.092 13.656 Atomic orbital electron populations 1.21856 0.97124 0.98651 1.02164 1.21809 0.94117 0.99037 1.00600 1.18983 0.95428 0.88590 0.82828 0.92825 1.22073 0.90830 1.04266 1.47712 0.92575 1.25933 1.07093 0.92363 0.91945 1.70716 1.09420 1.32066 1.38973 0.83544 0.74062 0.76340 0.76301 1.21372 1.21210 1.20800 1.47907 1.13152 1.53722 1.18821 1.20716 0.84443 0.80821 0.88279 1.90654 1.50966 1.60660 1.39869 1.22724 0.83899 0.93173 0.93984 1.21778 1.01947 0.97224 0.98314 1.20997 0.98286 0.92716 1.01252 1.19852 0.92206 0.95506 0.96076 1.20867 0.99716 0.95247 0.98222 1.21176 0.94630 0.96994 0.97665 1.19877 0.93536 0.97937 0.98884 1.20768 1.00994 0.94785 1.00229 1.21103 1.00332 0.91851 0.92623 1.20004 0.93569 0.98878 1.03823 1.20892 0.87245 0.79381 0.76156 1.90864 1.13946 1.69344 1.56008 1.86989 1.43336 1.54757 1.42413 0.95199 0.93207 0.92956 0.92225 0.93604 0.91405 0.77518 0.90573 0.90406 0.89531 0.87054 0.88523 0.85307 0.85603 0.90748 0.91614 0.91367 0.84567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.53 37.16 0.32 -2.45 16 2 C -0.12 -2.54 5.58 -26.73 -0.15 -2.68 16 3 C 0.24 6.03 1.95 -69.08 -0.13 5.89 16 4 H 0.05 1.54 6.12 -51.93 -0.32 1.22 16 5 C -0.61 -16.64 8.50 -34.44 -0.29 -16.93 16 6 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 7 C 0.04 1.04 5.45 -17.82 -0.10 0.94 16 8 N -0.88 -26.33 13.62 55.43 0.76 -25.58 16 9 Si 1.07 25.46 29.91 -169.99 -5.08 20.37 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 N -0.69 -15.57 4.61 -54.93 -0.25 -15.82 16 14 C 0.48 9.78 4.04 -10.99 -0.04 9.73 16 15 O -0.54 -12.20 12.99 5.55 0.07 -12.13 16 16 C 0.10 1.69 1.06 -91.83 -0.10 1.59 16 17 C -0.14 -1.68 8.82 37.16 0.33 -1.35 16 18 C -0.10 -1.35 4.52 -27.95 -0.13 -1.48 16 19 C -0.04 -0.59 5.46 -104.21 -0.57 -1.16 16 20 C -0.12 -1.70 9.71 -39.61 -0.38 -2.09 16 21 C -0.09 -1.15 9.68 -39.50 -0.38 -1.53 16 22 C -0.10 -1.51 5.88 -104.65 -0.62 -2.13 16 23 C -0.11 -1.29 10.01 36.00 0.36 -0.93 16 24 C -0.04 -0.73 9.29 -39.23 -0.36 -1.10 16 25 C -0.16 -3.05 5.66 -104.92 -0.59 -3.65 16 26 C 0.52 10.98 6.62 34.79 0.23 11.21 16 27 O -0.42 -10.20 17.40 -19.08 -0.33 -10.53 16 28 O -0.35 -6.60 9.56 -43.45 -0.42 -7.01 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.97 5.63 -51.93 -0.29 0.68 16 31 H 0.05 1.09 7.89 -51.92 -0.41 0.69 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.27 8.48 6.66 -40.82 -0.27 8.20 16 35 H 0.39 8.94 7.94 -40.82 -0.32 8.61 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.11 1.52 7.48 -51.93 -0.39 1.13 16 40 H 0.10 1.06 8.11 -51.93 -0.42 0.64 16 41 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 42 H 0.13 1.27 8.06 -52.48 -0.42 0.84 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 45 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 46 H 0.14 2.49 7.77 -52.48 -0.41 2.09 16 LS Contribution 374.87 15.07 5.65 5.65 Total: -1.00 -32.85 374.87 -8.91 -41.75 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -6.68 Total: 11.38 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.62 Total: -8.09 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.50 Total: -41.40 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.68 Total: -29.67 kcal Atomic # 14 Polarization: 25.46 SS G_CDS: -5.08 Total: 20.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.85 -8.91 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.811 kcal (2) G-P(sol) polarization free energy of solvation -32.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds