Wall clock time and date at job start Tue Mar 31 2020 15:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47004 * 2 1 4 4 H 1.09004 * 109.46977 * 305.75791 * 3 2 1 5 5 C 1.50704 * 109.47107 * 185.76079 * 3 2 1 6 6 H 1.07994 * 119.99752 * 335.20052 * 5 3 2 7 7 C 1.37876 * 119.99617 * 155.20439 * 5 3 2 8 8 N 1.31508 * 120.00318 * 355.31376 * 7 5 3 9 9 Si 1.86801 * 119.99425 * 175.32068 * 7 5 3 10 10 H 1.48503 * 109.47354 * 89.99684 * 9 7 5 11 11 H 1.48501 * 109.47243 * 329.99495 * 9 7 5 12 12 H 1.48499 * 109.46965 * 209.99657 * 9 7 5 13 13 N 1.46501 * 109.47185 * 65.75667 * 3 2 1 14 14 C 1.34773 * 120.00545 * 274.99976 * 13 3 2 15 15 O 1.21284 * 119.99718 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00457 * 179.97438 * 14 13 3 17 17 C 1.52997 * 109.50138 * 275.00414 * 16 14 13 18 18 C 1.52902 * 109.50440 * 154.92965 * 16 14 13 19 19 C 1.50665 * 110.27679 * 289.91130 * 18 16 14 20 20 C 1.38089 * 119.89707 * 158.91058 * 19 18 16 21 21 C 1.38321 * 120.14300 * 179.54797 * 20 19 18 22 22 C 1.38389 * 120.46924 * 0.02562 * 21 20 19 23 23 C 1.50699 * 119.97769 * 180.13137 * 22 21 20 24 24 C 1.38019 * 120.04158 * 0.10865 * 22 21 20 25 25 C 1.39395 * 119.66043 * 359.97438 * 24 22 21 26 26 C 1.48132 * 120.39478 * 179.80246 * 25 24 22 27 27 O 1.21470 * 121.44168 * 350.24919 * 26 25 24 28 28 O 1.35757 * 117.10855 * 170.27439 * 26 25 24 29 29 H 1.09004 * 109.47466 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47829 * 300.00118 * 1 2 3 31 31 H 1.09010 * 109.47198 * 60.00449 * 1 2 3 32 32 H 1.08997 * 109.47479 * 239.99711 * 2 1 3 33 33 H 1.08996 * 109.47039 * 119.99740 * 2 1 3 34 34 H 0.97003 * 120.00182 * 5.27407 * 8 7 5 35 35 H 0.97005 * 119.99388 * 95.00119 * 13 3 2 36 36 H 1.09002 * 109.47303 * 59.99794 * 17 16 14 37 37 H 1.09003 * 109.47173 * 179.97438 * 17 16 14 38 38 H 1.08998 * 109.47129 * 299.99775 * 17 16 14 39 39 H 1.09006 * 109.32695 * 50.19099 * 18 16 14 40 40 H 1.08996 * 109.33246 * 169.67663 * 18 16 14 41 41 H 1.08011 * 119.93173 * 359.54321 * 20 19 18 42 42 H 1.08005 * 119.76627 * 180.02562 * 21 20 19 43 43 H 1.09004 * 109.47276 * 269.98027 * 23 22 21 44 44 H 1.09003 * 109.47420 * 29.97766 * 23 22 21 45 45 H 1.09002 * 109.47207 * 149.97906 * 23 22 21 46 46 H 1.08004 * 120.16952 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5948 1.9852 -0.8340 5 6 3.5402 1.4449 -0.1426 6 1 4.1135 0.5841 0.1682 7 6 4.1807 2.5462 -0.6698 8 7 3.4778 3.5565 -1.1332 9 14 6.0470 2.6029 -0.7261 10 1 6.5215 2.0229 -2.0082 11 1 6.6005 1.8186 0.4069 12 1 6.5027 4.0124 -0.6218 13 7 1.6680 2.0920 1.2594 14 6 0.4523 2.6584 1.3923 15 8 -0.3341 2.6300 0.4694 16 6 0.0695 3.3259 2.6880 17 6 -0.4746 2.2781 3.6611 18 6 -1.0045 4.3809 2.4209 19 6 -0.4160 5.5465 1.6693 20 6 -1.2407 6.3891 0.9505 21 6 -0.7069 7.4662 0.2662 22 6 0.6551 7.7101 0.2941 23 6 1.2245 8.8885 -0.4530 24 6 1.4922 6.8750 1.0060 25 6 0.9582 5.7875 1.6954 26 6 1.8422 4.8782 2.4611 27 8 3.0516 4.9450 2.3700 28 8 1.2419 3.9667 3.2685 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.5128 3.5615 -1.0350 35 1 2.2968 2.1144 1.9977 36 1 0.2918 1.5270 3.8522 37 1 -0.7509 2.7614 4.5982 38 1 -1.3520 1.7994 3.2263 39 1 -1.8065 3.9378 1.8303 40 1 -1.4100 4.7313 3.3700 41 1 -2.3049 6.2067 0.9223 42 1 -1.3576 8.1216 -0.2937 43 1 1.4844 8.5848 -1.4671 44 1 0.4833 9.6869 -0.4916 45 1 2.1176 9.2464 0.0592 46 1 2.5555 7.0631 1.0287 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:37 Heat of formation + Delta-G solvation = -128.511157 kcal Electronic energy + Delta-G solvation = -30688.475389 eV Core-core repulsion = 26734.612294 eV Total energy + Delta-G solvation = -3953.863096 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.59821 -40.58121 -39.70235 -38.58448 -37.13123 -34.98575 -34.25933 -33.61526 -32.87788 -32.26728 -29.66868 -28.61237 -26.38530 -25.70983 -25.24940 -24.37517 -22.97739 -22.46646 -21.67715 -20.42525 -19.28774 -18.98867 -18.05608 -17.58017 -17.45268 -16.71328 -16.46328 -16.28506 -15.79928 -15.71053 -15.47555 -15.18985 -15.01609 -14.97248 -14.67528 -14.43996 -14.18278 -13.99914 -13.64888 -13.50601 -13.27786 -13.24334 -13.02266 -12.90529 -12.83798 -12.65966 -12.57890 -12.53375 -12.42183 -12.16174 -12.10007 -12.02320 -11.67235 -11.18718 -11.10205 -10.57610 -10.53142 -10.11864 -9.68523 -9.58662 -8.71543 -6.52147 -0.48062 0.23941 1.02411 1.44140 1.52657 1.54254 1.70370 1.89265 2.34886 2.49270 2.63721 2.98322 3.16843 3.27385 3.39300 3.69485 3.78543 3.87886 4.00020 4.20413 4.23729 4.27169 4.31717 4.44737 4.50622 4.53518 4.62485 4.67605 4.69801 4.76576 4.83614 4.85282 4.87167 5.03496 5.06119 5.12143 5.14392 5.18148 5.22563 5.25788 5.42982 5.45547 5.58783 5.74414 5.85102 5.89756 6.08379 6.23822 6.42607 6.82194 7.28365 7.34429 8.62837 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.009763 B = 0.006484 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.379376 B = 4317.367471 C = 5827.300235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.112 4.112 3 C 0.247 3.753 4 H 0.009 0.991 5 C -0.619 4.619 6 H 0.057 0.943 7 C -0.012 4.012 8 N -0.906 5.906 9 Si 1.110 2.890 10 H -0.267 1.267 11 H -0.268 1.268 12 H -0.293 1.293 13 N -0.695 5.695 14 C 0.474 3.526 15 O -0.562 6.562 16 C 0.102 3.898 17 C -0.132 4.132 18 C -0.093 4.093 19 C -0.048 4.048 20 C -0.120 4.120 21 C -0.076 4.076 22 C -0.108 4.108 23 C -0.110 4.110 24 C -0.071 4.071 25 C -0.197 4.197 26 C 0.520 3.480 27 O -0.477 6.477 28 O -0.357 6.357 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.031 0.969 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.255 0.745 35 H 0.388 0.612 36 H 0.069 0.931 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.140 0.860 41 H 0.169 0.831 42 H 0.169 0.831 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.351 5.993 8.289 16.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.151 4.151 3 C 0.146 3.854 4 H 0.027 0.973 5 C -0.657 4.657 6 H 0.075 0.925 7 C -0.215 4.215 8 N -0.541 5.541 9 Si 0.932 3.068 10 H -0.192 1.192 11 H -0.193 1.193 12 H -0.219 1.219 13 N -0.343 5.343 14 C 0.258 3.742 15 O -0.442 6.442 16 C 0.062 3.938 17 C -0.189 4.189 18 C -0.129 4.129 19 C -0.049 4.049 20 C -0.138 4.138 21 C -0.094 4.094 22 C -0.108 4.108 23 C -0.166 4.166 24 C -0.090 4.090 25 C -0.199 4.199 26 C 0.364 3.636 27 O -0.361 6.361 28 O -0.277 6.277 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.222 0.778 36 H 0.088 0.912 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.142 0.858 40 H 0.158 0.842 41 H 0.186 0.814 42 H 0.187 0.813 43 H 0.088 0.912 44 H 0.118 0.882 45 H 0.085 0.915 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.978 6.805 7.228 15.557 hybrid contribution -0.251 -0.894 0.512 1.060 sum -12.230 5.911 7.740 15.633 Atomic orbital electron populations 1.21709 0.95192 1.00444 1.01162 1.21722 0.95803 0.96617 1.00924 1.18703 0.94138 0.90099 0.82457 0.97281 1.22362 0.92267 1.03926 1.47137 0.92463 1.27212 1.10632 0.92141 0.91546 1.70852 1.08230 1.33377 1.41601 0.83051 0.69877 0.76072 0.77825 1.19172 1.19310 1.21898 1.47429 1.14316 1.54809 1.17732 1.21362 0.83155 0.79853 0.89807 1.90634 1.51297 1.61152 1.41157 1.23026 0.83641 0.94578 0.92504 1.21920 1.02148 0.96057 0.98792 1.21172 0.97223 0.91158 1.03364 1.20231 0.91185 0.96800 0.96659 1.21385 1.01378 0.94370 0.96651 1.21720 0.94194 0.96962 0.96520 1.20268 0.94321 0.98114 0.98144 1.20833 1.01977 0.94534 0.99265 1.21163 0.99855 0.93332 0.94642 1.20070 0.94832 0.99495 1.05497 1.21395 0.87083 0.79528 0.75630 1.90814 1.16113 1.70817 1.58308 1.86968 1.44371 1.54403 1.41942 0.91892 0.93149 0.94950 0.92638 0.92385 0.93470 0.77801 0.91231 0.86964 0.87534 0.85789 0.84228 0.81371 0.81330 0.91236 0.88173 0.91491 0.87112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.53 71.98 0.61 -4.27 16 2 C -0.11 -4.86 5.58 30.59 0.17 -4.69 16 3 C 0.25 12.81 1.95 44.25 0.09 12.89 16 4 H 0.01 0.56 6.12 -2.39 -0.01 0.55 16 5 C -0.62 -34.86 8.50 25.60 0.22 -34.64 16 6 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 7 C -0.01 -0.70 5.45 84.66 0.46 -0.24 16 8 N -0.91 -57.33 13.62 21.45 0.29 -57.04 16 9 Si 1.11 52.75 29.91 68.60 2.05 54.80 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 13 N -0.69 -32.43 4.61 -446.09 -2.06 -34.49 16 14 C 0.47 19.56 4.04 87.66 0.35 19.91 16 15 O -0.56 -25.33 12.99 -3.04 -0.04 -25.37 16 16 C 0.10 3.21 1.06 -11.58 -0.01 3.20 16 17 C -0.13 -2.85 8.82 71.98 0.63 -2.22 16 18 C -0.09 -2.35 4.52 29.80 0.13 -2.21 16 19 C -0.05 -1.51 5.46 -19.60 -0.11 -1.61 16 20 C -0.12 -2.95 9.71 22.25 0.22 -2.73 16 21 C -0.08 -1.80 9.68 22.33 0.22 -1.58 16 22 C -0.11 -3.16 5.88 -19.88 -0.12 -3.27 16 23 C -0.11 -2.44 10.01 71.24 0.71 -1.73 16 24 C -0.07 -2.71 9.29 22.50 0.21 -2.50 16 25 C -0.20 -7.74 5.66 -20.06 -0.11 -7.85 16 26 C 0.52 23.05 6.62 70.45 0.47 23.52 16 27 O -0.48 -24.99 17.40 19.78 0.34 -24.65 16 28 O -0.36 -13.42 9.56 -67.42 -0.64 -14.06 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.05 1.89 5.63 -2.39 -0.01 1.88 16 31 H 0.03 1.34 7.89 -2.38 -0.02 1.32 16 32 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.25 16.85 6.66 -92.71 -0.62 16.23 16 35 H 0.39 18.52 7.94 -92.70 -0.74 17.78 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.12 2.89 7.48 -2.38 -0.02 2.87 16 40 H 0.14 2.37 8.11 -2.39 -0.02 2.35 16 41 H 0.17 2.76 8.06 -2.90 -0.02 2.74 16 42 H 0.17 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.10 1.52 8.09 -2.39 -0.02 1.50 16 45 H 0.07 1.48 8.08 -2.39 -0.02 1.46 16 46 H 0.11 4.58 7.77 -2.91 -0.02 4.56 16 Total: -1.00 -78.79 374.87 4.51 -74.28 By element: Atomic # 1 Polarization: 36.15 SS G_CDS: 0.42 Total: 36.56 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: 4.15 Total: -10.03 kcal Atomic # 7 Polarization: -89.77 SS G_CDS: -1.76 Total: -91.53 kcal Atomic # 8 Polarization: -63.74 SS G_CDS: -0.34 Total: -64.08 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.05 Total: 54.80 kcal Total: -78.79 4.51 -74.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.235 kcal (2) G-P(sol) polarization free energy of solvation -78.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds