Wall clock time and date at job start Tue Mar 31 2020 15:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 H 1.08995 * 109.47014 * 55.00017 * 3 2 1 5 5 C 1.50695 * 109.47050 * 175.00250 * 3 2 1 6 6 H 1.07999 * 120.00218 * 120.00259 * 5 3 2 7 7 C 1.37881 * 119.99764 * 299.99806 * 5 3 2 8 8 N 1.31513 * 119.99981 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99712 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47027 * 90.00272 * 9 7 5 11 11 H 1.48506 * 109.47116 * 210.00158 * 9 7 5 12 12 H 1.48500 * 109.47133 * 329.99960 * 9 7 5 13 13 N 1.46498 * 109.47208 * 295.00176 * 3 2 1 14 14 C 1.34778 * 120.00104 * 85.00034 * 13 3 2 15 15 O 1.21281 * 119.99881 * 0.02562 * 14 13 3 16 16 C 1.50707 * 120.00234 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.49677 * 274.93304 * 16 14 13 18 18 C 1.52901 * 109.52834 * 154.84579 * 16 14 13 19 19 C 1.50587 * 110.32201 * 289.91618 * 18 16 14 20 20 C 1.38085 * 119.91371 * 158.80325 * 19 18 16 21 21 C 1.38325 * 120.14116 * 179.57786 * 20 19 18 22 22 C 1.38389 * 120.46750 * 359.97438 * 21 20 19 23 23 C 1.50700 * 119.97570 * 180.02562 * 22 21 20 24 24 C 1.38023 * 120.04596 * 0.09258 * 22 21 20 25 25 C 1.39402 * 119.65403 * 0.02562 * 24 22 21 26 26 C 1.48123 * 120.39099 * 179.59919 * 25 24 22 27 27 O 1.21472 * 121.44546 * 350.33326 * 26 25 24 28 28 O 1.35746 * 117.11179 * 170.31981 * 26 25 24 29 29 H 1.09001 * 109.46815 * 300.00073 * 1 2 3 30 30 H 1.09001 * 109.46972 * 59.99688 * 1 2 3 31 31 H 1.08994 * 109.47080 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46815 * 239.99927 * 2 1 3 33 33 H 1.08999 * 109.47188 * 119.99815 * 2 1 3 34 34 H 0.97000 * 119.99547 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00036 * 265.00002 * 13 3 2 36 36 H 1.08992 * 109.47216 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46945 * 300.06709 * 17 16 14 38 38 H 1.09000 * 109.47310 * 60.06156 * 17 16 14 39 39 H 1.09004 * 109.32528 * 169.66172 * 18 16 14 40 40 H 1.08994 * 109.33134 * 50.17863 * 18 16 14 41 41 H 1.08004 * 119.93418 * 359.55663 * 20 19 18 42 42 H 1.08003 * 119.76809 * 179.71475 * 21 20 19 43 43 H 1.09002 * 109.47001 * 90.00374 * 23 22 21 44 44 H 1.09004 * 109.47152 * 210.00047 * 23 22 21 45 45 H 1.08996 * 109.47672 * 330.00023 * 23 22 21 46 46 H 1.07997 * 120.17253 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8813 1.3817 10 1 6.4417 2.1142 2.0848 11 1 6.4397 -0.3098 2.1548 12 1 6.6136 0.8416 0.0277 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3392 2.6327 -0.4340 16 6 0.0362 3.3377 -2.6548 17 6 0.5445 4.7808 -2.6554 18 6 -1.4874 3.3332 -2.7833 19 6 -1.9870 1.9349 -3.0336 20 6 -3.2999 1.6121 -2.7528 21 6 -3.7661 0.3314 -2.9891 22 6 -2.9247 -0.6370 -3.5083 23 6 -3.4445 -2.0286 -3.7620 24 6 -1.6096 -0.3295 -3.7927 25 6 -1.1354 0.9595 -3.5536 26 6 0.2753 1.3049 -3.8444 27 8 1.0913 0.4510 -4.1280 28 8 0.6166 2.6172 -3.7806 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0612 2.9498 35 1 2.2719 2.1232 -1.9977 36 1 0.2553 5.2675 -3.5867 37 1 0.1100 5.3194 -1.8132 38 1 1.6309 4.7834 -2.5667 39 1 -1.7813 3.9753 -3.6136 40 1 -1.9283 3.7143 -1.8622 41 1 -3.9642 2.3610 -2.3474 42 1 -4.7929 0.0842 -2.7629 43 1 -3.8410 -2.0892 -4.7755 44 1 -2.6324 -2.7465 -3.6460 45 1 -4.2358 -2.2568 -3.0480 46 1 -0.9511 -1.0837 -4.1975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:42 Heat of formation + Delta-G solvation = -101.933321 kcal Electronic energy + Delta-G solvation = -30396.306418 eV Core-core repulsion = 26443.595824 eV Total energy + Delta-G solvation = -3952.710594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.37657 -39.14469 -38.51147 -37.14971 -35.23302 -33.90986 -32.54193 -32.23275 -31.26664 -30.79915 -28.72922 -27.07602 -25.41200 -24.51587 -23.73367 -22.65492 -21.80477 -21.19533 -19.57617 -19.02145 -18.04446 -16.96136 -16.68032 -16.14319 -15.83146 -15.45901 -15.27597 -14.74357 -14.56226 -14.30107 -14.17088 -14.11070 -13.65931 -13.48415 -13.39295 -12.71223 -12.68261 -12.58737 -12.44251 -12.26173 -12.01341 -11.98590 -11.75648 -11.56489 -11.47413 -11.26803 -11.19779 -11.07621 -10.95547 -10.83398 -10.30787 -10.19339 -9.97938 -9.63119 -9.09502 -9.07526 -9.02799 -8.62087 -8.49591 -7.90921 -6.11662 -4.20694 0.62009 1.21957 2.22922 2.92221 3.22755 3.26369 3.32845 3.36155 3.63189 3.81434 4.13496 4.29248 4.36280 4.44926 4.74205 4.74328 4.98247 5.11665 5.14106 5.19855 5.22885 5.38497 5.42337 5.45235 5.50642 5.60321 5.62315 5.74031 5.81566 5.95023 6.01256 6.11043 6.24298 6.37393 6.39106 6.45690 6.64854 6.75372 6.89140 7.05672 7.16112 7.31207 7.38021 7.51672 7.60772 7.71027 7.87831 8.16483 8.55485 8.72502 8.97701 9.45789 10.93732 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014411 B = 0.004408 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.521380 B = 6350.265686 C = 7041.318265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.051 0.949 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.068 3.932 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.693 5.693 14 C 0.480 3.520 15 O -0.530 6.530 16 C 0.106 3.894 17 C -0.137 4.137 18 C -0.098 4.098 19 C -0.031 4.031 20 C -0.119 4.119 21 C -0.083 4.083 22 C -0.103 4.103 23 C -0.112 4.112 24 C -0.048 4.048 25 C -0.167 4.167 26 C 0.527 3.473 27 O -0.436 6.436 28 O -0.352 6.352 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.022 0.978 32 H 0.032 0.968 33 H 0.100 0.900 34 H 0.264 0.736 35 H 0.394 0.606 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.115 0.885 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.460 3.552 -12.101 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.080 0.920 7 C -0.135 4.135 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.340 5.340 14 C 0.262 3.738 15 O -0.408 6.408 16 C 0.066 3.934 17 C -0.195 4.195 18 C -0.135 4.135 19 C -0.032 4.032 20 C -0.137 4.137 21 C -0.101 4.101 22 C -0.103 4.103 23 C -0.169 4.169 24 C -0.067 4.067 25 C -0.168 4.168 26 C 0.368 3.632 27 O -0.318 6.318 28 O -0.272 6.272 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.227 0.773 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.133 0.867 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.426 3.083 -11.480 18.693 hybrid contribution 1.209 -0.108 -0.128 1.221 sum -13.217 2.974 -11.608 17.841 Atomic orbital electron populations 1.21827 0.98376 0.98060 1.00983 1.21931 0.92554 0.99696 1.02453 1.18860 0.94475 0.89247 0.80430 0.93153 1.21218 0.90556 1.39123 1.06286 0.92013 1.24867 0.98667 0.94673 0.95335 1.69893 1.35154 1.37634 1.09342 0.86444 0.84799 0.77614 0.78268 1.20549 1.21052 1.19748 1.46616 1.14159 1.54278 1.18961 1.20447 0.83781 0.80617 0.88980 1.90699 1.51278 1.59268 1.39580 1.22736 0.93427 0.94280 0.82950 1.21811 1.03490 0.90231 1.03929 1.21030 0.93047 0.94226 1.05207 1.19870 0.93821 0.94408 0.95067 1.20925 0.94750 0.97080 1.00966 1.21227 0.99583 0.92694 0.96621 1.19886 0.93550 0.96667 1.00244 1.20777 1.01644 0.92431 1.02033 1.21085 0.95091 0.94655 0.95821 1.20001 0.94063 0.95792 1.06974 1.20930 0.87258 0.81103 0.73936 1.90826 1.54441 1.45582 1.40902 1.87016 1.71407 1.22060 1.46677 0.93278 0.94387 0.95925 0.94919 0.88144 0.92574 0.77286 0.90305 0.89196 0.90239 0.88155 0.86691 0.85037 0.85427 0.91109 0.91194 0.91308 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.52 37.16 0.32 -2.81 16 2 C -0.13 -3.24 5.45 -26.73 -0.15 -3.39 16 3 C 0.27 6.97 2.24 -69.09 -0.15 6.82 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -14.46 8.73 -34.44 -0.30 -14.77 16 6 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 7 C 0.07 1.85 5.29 -17.82 -0.09 1.75 16 8 N -0.88 -24.96 11.29 55.43 0.63 -24.33 16 9 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 N -0.69 -15.15 4.60 -54.93 -0.25 -15.40 16 14 C 0.48 9.39 4.01 -10.98 -0.04 9.35 16 15 O -0.53 -11.58 12.99 5.56 0.07 -11.50 16 16 C 0.11 1.59 1.06 -91.82 -0.10 1.49 16 17 C -0.14 -1.60 8.82 37.16 0.33 -1.27 16 18 C -0.10 -1.22 4.51 -27.99 -0.13 -1.35 16 19 C -0.03 -0.44 5.46 -104.25 -0.57 -1.00 16 20 C -0.12 -1.40 9.71 -39.61 -0.38 -1.78 16 21 C -0.08 -0.91 9.69 -39.49 -0.38 -1.29 16 22 C -0.10 -1.23 5.88 -104.64 -0.62 -1.84 16 23 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 24 C -0.05 -0.69 9.29 -39.23 -0.36 -1.06 16 25 C -0.17 -2.64 5.26 -104.92 -0.55 -3.20 16 26 C 0.53 9.48 6.62 34.79 0.23 9.71 16 27 O -0.44 -8.91 17.40 -19.09 -0.33 -9.24 16 28 O -0.35 -5.80 9.57 -43.42 -0.42 -6.22 16 29 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 30 H 0.04 0.85 5.24 -51.93 -0.27 0.58 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.10 2.78 5.95 -51.93 -0.31 2.48 16 34 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.39 8.35 7.89 -40.82 -0.32 8.03 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.93 8.11 -51.93 -0.42 0.51 16 40 H 0.11 1.39 7.48 -51.93 -0.39 1.00 16 41 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 42 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 45 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 46 H 0.14 1.90 7.77 -52.49 -0.41 1.49 16 LS Contribution 372.30 15.07 5.61 5.61 Total: -1.00 -32.00 372.30 -8.99 -41.00 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.68 Total: 9.33 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -2.60 Total: -5.26 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.37 Total: -39.73 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.68 Total: -26.96 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.00 -8.99 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.938 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds