Wall clock time and date at job start Tue Mar 31 2020 15:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47041 * 2 1 4 4 H 1.08995 * 109.47014 * 55.00017 * 3 2 1 5 5 C 1.50695 * 109.47050 * 175.00250 * 3 2 1 6 6 H 1.07999 * 120.00218 * 120.00259 * 5 3 2 7 7 C 1.37881 * 119.99764 * 299.99806 * 5 3 2 8 8 N 1.31513 * 119.99981 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99712 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47027 * 90.00272 * 9 7 5 11 11 H 1.48506 * 109.47116 * 210.00158 * 9 7 5 12 12 H 1.48500 * 109.47133 * 329.99960 * 9 7 5 13 13 N 1.46498 * 109.47208 * 295.00176 * 3 2 1 14 14 C 1.34778 * 120.00104 * 85.00034 * 13 3 2 15 15 O 1.21281 * 119.99881 * 0.02562 * 14 13 3 16 16 C 1.50707 * 120.00234 * 180.02562 * 14 13 3 17 17 C 1.52999 * 109.49677 * 274.93304 * 16 14 13 18 18 C 1.52901 * 109.52834 * 154.84579 * 16 14 13 19 19 C 1.50587 * 110.32201 * 289.91618 * 18 16 14 20 20 C 1.38085 * 119.91371 * 158.80325 * 19 18 16 21 21 C 1.38325 * 120.14116 * 179.57786 * 20 19 18 22 22 C 1.38389 * 120.46750 * 359.97438 * 21 20 19 23 23 C 1.50700 * 119.97570 * 180.02562 * 22 21 20 24 24 C 1.38023 * 120.04596 * 0.09258 * 22 21 20 25 25 C 1.39402 * 119.65403 * 0.02562 * 24 22 21 26 26 C 1.48123 * 120.39099 * 179.59919 * 25 24 22 27 27 O 1.21472 * 121.44546 * 350.33326 * 26 25 24 28 28 O 1.35746 * 117.11179 * 170.31981 * 26 25 24 29 29 H 1.09001 * 109.46815 * 300.00073 * 1 2 3 30 30 H 1.09001 * 109.46972 * 59.99688 * 1 2 3 31 31 H 1.08994 * 109.47080 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46815 * 239.99927 * 2 1 3 33 33 H 1.08999 * 109.47188 * 119.99815 * 2 1 3 34 34 H 0.97000 * 119.99547 * 180.02562 * 8 7 5 35 35 H 0.96999 * 120.00036 * 265.00002 * 13 3 2 36 36 H 1.08992 * 109.47216 * 180.02562 * 17 16 14 37 37 H 1.09001 * 109.46945 * 300.06709 * 17 16 14 38 38 H 1.09000 * 109.47310 * 60.06156 * 17 16 14 39 39 H 1.09004 * 109.32528 * 169.66172 * 18 16 14 40 40 H 1.08994 * 109.33134 * 50.17863 * 18 16 14 41 41 H 1.08004 * 119.93418 * 359.55663 * 20 19 18 42 42 H 1.08003 * 119.76809 * 179.71475 * 21 20 19 43 43 H 1.09002 * 109.47001 * 90.00374 * 23 22 21 44 44 H 1.09004 * 109.47152 * 210.00047 * 23 22 21 45 45 H 1.08996 * 109.47672 * 330.00023 * 23 22 21 46 46 H 1.07997 * 120.17253 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4062 0.3366 2.1728 9 14 6.0050 0.8813 1.3817 10 1 6.4417 2.1142 2.0848 11 1 6.4397 -0.3098 2.1548 12 1 6.6136 0.8416 0.0277 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3392 2.6327 -0.4340 16 6 0.0362 3.3377 -2.6548 17 6 0.5445 4.7808 -2.6554 18 6 -1.4874 3.3332 -2.7833 19 6 -1.9870 1.9349 -3.0336 20 6 -3.2999 1.6121 -2.7528 21 6 -3.7661 0.3314 -2.9891 22 6 -2.9247 -0.6370 -3.5083 23 6 -3.4445 -2.0286 -3.7620 24 6 -1.6096 -0.3295 -3.7927 25 6 -1.1354 0.9595 -3.5536 26 6 0.2753 1.3049 -3.8444 27 8 1.0913 0.4510 -4.1280 28 8 0.6166 2.6172 -3.7806 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0612 2.9498 35 1 2.2719 2.1232 -1.9977 36 1 0.2553 5.2675 -3.5867 37 1 0.1100 5.3194 -1.8132 38 1 1.6309 4.7834 -2.5667 39 1 -1.7813 3.9753 -3.6136 40 1 -1.9283 3.7143 -1.8622 41 1 -3.9642 2.3610 -2.3474 42 1 -4.7929 0.0842 -2.7629 43 1 -3.8410 -2.0892 -4.7755 44 1 -2.6324 -2.7465 -3.6460 45 1 -4.2358 -2.2568 -3.0480 46 1 -0.9511 -1.0837 -4.1975 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399979.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:41 Heat of formation + Delta-G solvation = -120.563002 kcal Electronic energy + Delta-G solvation = -30397.114262 eV Core-core repulsion = 26443.595824 eV Total energy + Delta-G solvation = -3953.518438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.63909 -40.55530 -39.69638 -38.58198 -37.08389 -34.98628 -34.34373 -33.57973 -32.63187 -32.25342 -29.64934 -29.04218 -26.35700 -25.78278 -25.28585 -24.26522 -22.97661 -22.44709 -21.48021 -20.57693 -19.28005 -18.46515 -18.00271 -17.58529 -17.37737 -17.15398 -16.48148 -16.34612 -15.92909 -15.68669 -15.41901 -15.12403 -15.06359 -14.68624 -14.65009 -14.36818 -13.85802 -13.73124 -13.61781 -13.40228 -13.29365 -13.24480 -13.14891 -13.00484 -12.94917 -12.82267 -12.73245 -12.48536 -12.43863 -12.22129 -12.14556 -12.07002 -11.68387 -11.19901 -11.13776 -10.68193 -10.54847 -10.09412 -9.77882 -9.55446 -8.21712 -6.38914 -0.48155 0.27044 1.01358 1.40033 1.41130 1.48015 1.52425 1.88645 2.26695 2.44922 2.65057 2.96961 3.07373 3.25878 3.41144 3.61980 3.80965 3.89739 4.02829 4.23172 4.30018 4.38400 4.46401 4.47710 4.56167 4.63573 4.66139 4.70834 4.73799 4.82213 4.88419 4.89322 4.96780 5.10088 5.13450 5.14549 5.22902 5.29823 5.32217 5.42434 5.46664 5.51772 5.61355 5.70609 5.81044 5.87082 6.07393 6.19520 6.65788 6.76437 7.19787 7.35974 8.83712 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.014411 B = 0.004408 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.521380 B = 6350.265686 C = 7041.318265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.119 4.119 3 C 0.282 3.718 4 H 0.011 0.989 5 C -0.554 4.554 6 H 0.063 0.937 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.268 1.268 13 N -0.701 5.701 14 C 0.478 3.522 15 O -0.553 6.553 16 C 0.110 3.890 17 C -0.136 4.136 18 C -0.095 4.095 19 C -0.045 4.045 20 C -0.120 4.120 21 C -0.076 4.076 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.070 4.070 25 C -0.197 4.197 26 C 0.521 3.479 27 O -0.480 6.480 28 O -0.355 6.355 29 H 0.035 0.965 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.021 0.979 33 H 0.076 0.924 34 H 0.267 0.733 35 H 0.396 0.604 36 H 0.115 0.885 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.533 4.679 -12.882 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.158 4.158 3 C 0.179 3.821 4 H 0.029 0.971 5 C -0.592 4.592 6 H 0.081 0.919 7 C -0.180 4.180 8 N -0.549 5.549 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.192 1.192 13 N -0.349 5.349 14 C 0.262 3.738 15 O -0.433 6.433 16 C 0.070 3.930 17 C -0.193 4.193 18 C -0.132 4.132 19 C -0.046 4.046 20 C -0.137 4.137 21 C -0.093 4.093 22 C -0.106 4.106 23 C -0.168 4.168 24 C -0.088 4.088 25 C -0.198 4.198 26 C 0.365 3.635 27 O -0.364 6.364 28 O -0.275 6.275 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.229 0.771 36 H 0.133 0.867 37 H 0.122 0.878 38 H 0.086 0.914 39 H 0.159 0.841 40 H 0.141 0.859 41 H 0.181 0.819 42 H 0.183 0.817 43 H 0.107 0.893 44 H 0.081 0.919 45 H 0.105 0.895 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.525 4.241 -12.281 21.022 hybrid contribution 1.752 -0.463 0.125 1.817 sum -14.773 3.777 -12.157 19.501 Atomic orbital electron populations 1.21640 0.96537 0.98947 1.00449 1.21762 0.94115 0.99360 1.00551 1.18404 0.93794 0.88937 0.80947 0.97089 1.21527 0.91469 1.39494 1.06686 0.91866 1.25714 1.03343 0.94072 0.94865 1.70020 1.37047 1.38055 1.09780 0.85396 0.79067 0.77844 0.78373 1.19708 1.20592 1.19228 1.46451 1.15551 1.55139 1.17710 1.21300 0.82339 0.79527 0.90622 1.90672 1.51575 1.59864 1.41178 1.22935 0.95549 0.94822 0.79662 1.21942 1.02855 0.88031 1.06483 1.21173 0.90432 0.94361 1.07202 1.20156 0.94677 0.94627 0.95114 1.21355 0.94152 0.98238 0.99985 1.21714 1.01023 0.92005 0.94583 1.20255 0.92560 0.98433 0.99361 1.20847 1.01881 0.90413 1.03635 1.21199 0.96448 0.94205 0.96960 1.20011 0.93069 0.97185 1.09562 1.21440 0.88139 0.81141 0.72736 1.90786 1.55716 1.46725 1.43214 1.86999 1.72071 1.21643 1.46825 0.94624 0.93862 0.94268 0.96007 0.90556 0.92399 0.77082 0.86662 0.87829 0.91383 0.84104 0.85909 0.81870 0.81744 0.89347 0.91907 0.89452 0.85854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.61 8.52 71.98 0.61 -5.00 16 2 C -0.12 -6.31 5.45 30.60 0.17 -6.14 16 3 C 0.28 15.15 2.24 44.24 0.10 15.25 16 4 H 0.01 0.69 7.58 -2.39 -0.02 0.67 16 5 C -0.55 -30.98 8.73 25.60 0.22 -30.76 16 6 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 1.15 5.29 84.66 0.45 1.59 16 8 N -0.91 -52.94 11.29 21.45 0.24 -52.70 16 9 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.70 -31.74 4.60 -446.10 -2.05 -33.79 16 14 C 0.48 18.85 4.01 87.66 0.35 19.20 16 15 O -0.55 -24.33 12.99 -3.03 -0.04 -24.37 16 16 C 0.11 3.16 1.06 -11.57 -0.01 3.14 16 17 C -0.14 -2.85 8.82 71.98 0.63 -2.22 16 18 C -0.10 -2.10 4.51 29.78 0.13 -1.97 16 19 C -0.05 -1.17 5.46 -19.62 -0.11 -1.28 16 20 C -0.12 -2.39 9.71 22.25 0.22 -2.17 16 21 C -0.08 -1.38 9.69 22.33 0.22 -1.17 16 22 C -0.11 -2.32 5.88 -19.88 -0.12 -2.44 16 23 C -0.11 -1.72 10.01 71.24 0.71 -1.01 16 24 C -0.07 -2.02 9.29 22.50 0.21 -1.81 16 25 C -0.20 -6.23 5.26 -20.06 -0.11 -6.33 16 26 C 0.52 19.32 6.62 70.45 0.47 19.79 16 27 O -0.48 -20.76 17.40 19.77 0.34 -20.42 16 28 O -0.36 -11.71 9.57 -67.31 -0.64 -12.35 16 29 H 0.03 1.75 7.85 -2.39 -0.02 1.73 16 30 H 0.04 1.98 5.24 -2.39 -0.01 1.97 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 4.42 5.95 -2.39 -0.01 4.41 16 34 H 0.27 14.62 8.31 -92.71 -0.77 13.84 16 35 H 0.40 17.51 7.89 -92.71 -0.73 16.78 16 36 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.14 1.98 8.11 -2.38 -0.02 1.96 16 40 H 0.12 2.57 7.48 -2.39 -0.02 2.55 16 41 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 42 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.06 1.06 8.08 -2.38 -0.02 1.04 16 45 H 0.09 1.03 8.09 -2.39 -0.02 1.02 16 46 H 0.12 3.70 7.77 -2.91 -0.02 3.68 16 Total: -1.00 -73.59 372.30 4.30 -69.29 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.27 Total: 31.95 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 4.15 Total: -3.32 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -1.81 Total: -86.49 kcal Atomic # 8 Polarization: -56.80 SS G_CDS: -0.34 Total: -57.14 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -73.59 4.30 -69.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399979.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.273 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds