Wall clock time and date at job start Tue Mar 31 2020 15:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 H 1.09002 * 109.47070 * 55.00009 * 3 2 1 5 5 C 1.50703 * 109.46966 * 174.99919 * 3 2 1 6 6 H 1.07996 * 119.99751 * 120.00006 * 5 3 2 7 7 C 1.37877 * 120.00001 * 300.00469 * 5 3 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46942 * 119.99666 * 9 7 5 12 12 H 1.48504 * 109.46979 * 239.99580 * 9 7 5 13 13 N 1.46505 * 109.47411 * 294.99930 * 3 2 1 14 14 C 1.34769 * 119.99686 * 84.99974 * 13 3 2 15 15 O 1.21275 * 120.00678 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99690 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.50252 * 84.92568 * 16 14 13 18 18 C 1.52912 * 109.50637 * 205.00065 * 16 14 13 19 19 C 1.50580 * 110.32558 * 169.84419 * 18 16 14 20 20 C 1.38092 * 119.92094 * 158.71955 * 19 18 16 21 21 C 1.38324 * 120.14083 * 179.86650 * 20 19 18 22 22 C 1.38387 * 120.47054 * 359.95349 * 21 20 19 23 23 C 1.50701 * 119.97754 * 180.08929 * 22 21 20 24 24 C 1.38024 * 120.04596 * 0.07448 * 22 21 20 25 25 C 1.39402 * 119.65363 * 0.03292 * 24 22 21 26 26 C 1.48126 * 120.38993 * 179.57717 * 25 24 22 27 27 O 1.21474 * 121.44485 * 350.59671 * 26 25 24 28 28 O 1.35745 * 117.11657 * 170.56625 * 26 25 24 29 29 H 1.09000 * 109.46927 * 59.99869 * 1 2 3 30 30 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47306 * 299.99810 * 1 2 3 32 32 H 1.09000 * 109.47306 * 240.00190 * 2 1 3 33 33 H 1.08996 * 109.47287 * 119.99816 * 2 1 3 34 34 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99634 * 265.00306 * 13 3 2 36 36 H 1.09003 * 109.46758 * 59.99828 * 17 16 14 37 37 H 1.08994 * 109.47314 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.46950 * 300.00256 * 17 16 14 39 39 H 1.09002 * 109.32791 * 290.10930 * 18 16 14 40 40 H 1.09002 * 109.32327 * 49.74993 * 18 16 14 41 41 H 1.07998 * 119.92796 * 359.84830 * 20 19 18 42 42 H 1.07999 * 119.76178 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.46915 * 90.00480 * 23 22 21 44 44 H 1.09000 * 109.47503 * 210.00436 * 23 22 21 45 45 H 1.09001 * 109.47319 * 330.00452 * 23 22 21 46 46 H 1.07997 * 120.17074 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.5987 1.5465 0.1942 11 1 6.3989 1.6168 2.6103 12 1 6.4971 -0.5174 1.4630 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4342 16 6 0.0366 3.3387 -2.6544 17 6 -0.5175 2.2957 -3.6271 18 6 -1.0355 4.3910 -2.3691 19 6 -1.2695 5.2431 -3.5883 20 6 -2.4533 5.9412 -3.7239 21 6 -2.6719 6.7275 -4.8407 22 6 -1.7096 6.8237 -5.8306 23 6 -1.9586 7.6852 -7.0417 24 6 -0.5218 6.1313 -5.7092 25 6 -0.2986 5.3361 -4.5863 26 6 0.9664 4.5787 -4.4438 27 8 1.7598 4.4922 -5.3595 28 8 1.2009 3.9858 -3.2454 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0611 2.9499 35 1 2.2719 2.1232 -1.9978 36 1 -1.3893 1.8135 -3.1848 37 1 -0.8051 2.7838 -4.5582 38 1 0.2476 1.5466 -3.8312 39 1 -1.9651 3.8932 -2.0929 40 1 -0.7079 5.0257 -1.5458 41 1 -3.2101 5.8728 -2.9565 42 1 -3.6001 7.2705 -4.9407 43 1 -1.5997 8.6962 -6.8484 44 1 -1.4289 7.2692 -7.8987 45 1 -3.0274 7.7135 -7.2540 46 1 0.2308 6.2052 -6.4803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:45 Heat of formation + Delta-G solvation = -103.625841 kcal Electronic energy + Delta-G solvation = -29086.990682 eV Core-core repulsion = 25134.206694 eV Total energy + Delta-G solvation = -3952.783987 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44249 -39.38702 -38.74604 -37.30421 -35.25368 -34.15189 -32.49249 -32.05692 -31.51900 -30.84307 -28.78408 -27.06877 -26.24934 -24.44926 -23.85542 -22.79880 -21.98707 -20.81763 -19.54503 -18.94664 -18.25867 -17.44264 -16.61476 -16.25443 -15.80606 -15.48607 -15.31683 -15.04552 -14.72048 -14.69380 -14.43671 -14.23307 -13.89466 -13.46245 -13.36114 -12.95131 -12.75682 -12.70092 -12.60898 -12.39204 -12.16658 -12.06332 -11.83485 -11.66092 -11.54751 -11.40416 -11.26402 -10.98549 -10.86779 -10.76783 -10.38650 -10.25568 -10.20901 -9.67610 -9.36131 -9.14310 -9.06606 -8.85492 -8.51718 -7.92046 -6.13154 -4.21886 0.37744 0.96420 2.05063 2.75084 3.25071 3.29357 3.33330 3.37346 3.38606 3.70219 3.99324 4.25008 4.32865 4.40802 4.52674 4.58660 4.65447 4.89526 4.90776 5.15780 5.17248 5.19983 5.24174 5.31804 5.40677 5.45841 5.54936 5.58159 5.66791 5.78582 5.90127 5.92849 6.04236 6.13748 6.33865 6.39219 6.51441 6.59228 6.82156 6.98172 7.12863 7.28434 7.32114 7.35221 7.57899 7.70359 7.86363 8.14340 8.55941 8.72568 8.98369 9.45042 10.92308 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020332 B = 0.003078 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.823915 B = 9094.526405 C = 9872.978095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.129 4.129 3 C 0.268 3.732 4 H 0.052 0.948 5 C -0.533 4.533 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.686 5.686 14 C 0.522 3.478 15 O -0.534 6.534 16 C 0.109 3.891 17 C -0.176 4.176 18 C -0.096 4.096 19 C -0.034 4.034 20 C -0.123 4.123 21 C -0.082 4.082 22 C -0.105 4.105 23 C -0.113 4.113 24 C -0.051 4.051 25 C -0.171 4.171 26 C 0.531 3.469 27 O -0.449 6.449 28 O -0.344 6.344 29 H 0.036 0.964 30 H 0.024 0.976 31 H 0.051 0.949 32 H 0.032 0.968 33 H 0.101 0.899 34 H 0.264 0.736 35 H 0.396 0.604 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.638 10.758 -15.181 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.166 3.834 4 H 0.069 0.931 5 C -0.571 4.571 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.728 3.272 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.333 5.333 14 C 0.304 3.696 15 O -0.413 6.413 16 C 0.069 3.931 17 C -0.233 4.233 18 C -0.133 4.133 19 C -0.035 4.035 20 C -0.141 4.141 21 C -0.100 4.100 22 C -0.105 4.105 23 C -0.170 4.170 24 C -0.069 4.069 25 C -0.173 4.173 26 C 0.373 3.627 27 O -0.332 6.332 28 O -0.263 6.263 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.074 0.926 35 H 0.230 0.770 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.560 10.550 -14.643 22.574 hybrid contribution 1.181 0.047 -0.231 1.204 sum -12.380 10.597 -14.874 22.063 Atomic orbital electron populations 1.21851 0.98373 0.98190 1.01098 1.21950 0.92586 0.99657 1.02547 1.18907 0.94572 0.89249 0.80650 0.93058 1.21276 0.90581 1.38871 1.06380 0.91836 1.24872 0.98679 0.94745 0.95324 1.69896 1.35065 1.37759 1.09366 0.86396 0.84817 0.77774 0.78190 1.19621 1.20879 1.20871 1.46553 1.13834 1.53928 1.18937 1.19353 0.83806 0.79934 0.86502 1.90731 1.51576 1.61169 1.37808 1.22694 0.84125 0.92588 0.93683 1.22456 1.03304 0.98998 0.98567 1.20972 1.00156 0.96339 0.95854 1.20032 0.93433 0.96023 0.93979 1.21020 0.96840 0.97587 0.98607 1.21272 0.98790 0.96968 0.93009 1.19926 0.94110 0.99100 0.97360 1.20789 1.02534 0.98855 0.94797 1.21122 0.96611 0.93284 0.95906 1.20095 0.95944 1.03482 0.97751 1.20886 0.84945 0.76587 0.80286 1.90800 1.48620 1.58405 1.35326 1.87098 1.37453 1.68287 1.33446 0.94472 0.95688 0.93038 0.94871 0.88067 0.92613 0.77019 0.89138 0.91191 0.90127 0.87003 0.87685 0.84727 0.85275 0.90923 0.91241 0.91289 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.52 37.16 0.32 -2.60 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.62 2.24 -69.08 -0.15 6.47 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -24.49 11.29 55.43 0.63 -23.87 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.69 -14.33 4.93 -54.93 -0.27 -14.60 16 14 C 0.52 9.89 5.28 -10.99 -0.06 9.84 16 15 O -0.53 -11.28 13.41 5.56 0.07 -11.20 16 16 C 0.11 1.63 1.04 -91.81 -0.10 1.53 16 17 C -0.18 -2.22 8.19 37.16 0.30 -1.92 16 18 C -0.10 -1.20 4.16 -27.99 -0.12 -1.32 16 19 C -0.03 -0.39 5.32 -104.25 -0.55 -0.94 16 20 C -0.12 -1.09 9.71 -39.60 -0.38 -1.47 16 21 C -0.08 -0.64 9.68 -39.49 -0.38 -1.02 16 22 C -0.10 -0.89 5.88 -104.64 -0.62 -1.50 16 23 C -0.11 -0.65 10.01 36.01 0.36 -0.29 16 24 C -0.05 -0.54 9.29 -39.23 -0.36 -0.91 16 25 C -0.17 -2.15 5.18 -104.92 -0.54 -2.69 16 26 C 0.53 8.20 6.73 34.79 0.23 8.43 16 27 O -0.45 -7.81 17.40 -19.09 -0.33 -8.14 16 28 O -0.34 -5.67 9.51 -43.42 -0.41 -6.08 16 29 H 0.04 0.74 5.65 -51.93 -0.29 0.45 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.16 7.85 -51.93 -0.41 0.75 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.40 7.84 7.98 -40.82 -0.33 7.51 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.80 6.46 -51.93 -0.34 0.47 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.11 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.11 1.40 8.10 -51.93 -0.42 0.98 16 41 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 45 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 46 H 0.14 1.38 7.77 -52.49 -0.41 0.98 16 LS Contribution 372.58 15.07 5.61 5.61 Total: -1.00 -30.51 372.58 -8.97 -39.48 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.65 Total: 7.31 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -2.59 Total: -4.31 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.36 Total: -38.47 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.67 Total: -25.42 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.51 -8.97 -39.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.146 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds