Wall clock time and date at job start Tue Mar 31 2020 15:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46754 * 2 1 4 4 H 1.09002 * 109.47070 * 55.00009 * 3 2 1 5 5 C 1.50703 * 109.46966 * 174.99919 * 3 2 1 6 6 H 1.07996 * 119.99751 * 120.00006 * 5 3 2 7 7 C 1.37877 * 120.00001 * 300.00469 * 5 3 2 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46942 * 119.99666 * 9 7 5 12 12 H 1.48504 * 109.46979 * 239.99580 * 9 7 5 13 13 N 1.46505 * 109.47411 * 294.99930 * 3 2 1 14 14 C 1.34769 * 119.99686 * 84.99974 * 13 3 2 15 15 O 1.21275 * 120.00678 * 0.02562 * 14 13 3 16 16 C 1.50701 * 119.99690 * 179.97438 * 14 13 3 17 17 C 1.53005 * 109.50252 * 84.92568 * 16 14 13 18 18 C 1.52912 * 109.50637 * 205.00065 * 16 14 13 19 19 C 1.50580 * 110.32558 * 169.84419 * 18 16 14 20 20 C 1.38092 * 119.92094 * 158.71955 * 19 18 16 21 21 C 1.38324 * 120.14083 * 179.86650 * 20 19 18 22 22 C 1.38387 * 120.47054 * 359.95349 * 21 20 19 23 23 C 1.50701 * 119.97754 * 180.08929 * 22 21 20 24 24 C 1.38024 * 120.04596 * 0.07448 * 22 21 20 25 25 C 1.39402 * 119.65363 * 0.03292 * 24 22 21 26 26 C 1.48126 * 120.38993 * 179.57717 * 25 24 22 27 27 O 1.21474 * 121.44485 * 350.59671 * 26 25 24 28 28 O 1.35745 * 117.11657 * 170.56625 * 26 25 24 29 29 H 1.09000 * 109.46927 * 59.99869 * 1 2 3 30 30 H 1.09001 * 109.47198 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47306 * 299.99810 * 1 2 3 32 32 H 1.09000 * 109.47306 * 240.00190 * 2 1 3 33 33 H 1.08996 * 109.47287 * 119.99816 * 2 1 3 34 34 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 35 35 H 0.97000 * 119.99634 * 265.00306 * 13 3 2 36 36 H 1.09003 * 109.46758 * 59.99828 * 17 16 14 37 37 H 1.08994 * 109.47314 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.46950 * 300.00256 * 17 16 14 39 39 H 1.09002 * 109.32791 * 290.10930 * 18 16 14 40 40 H 1.09002 * 109.32327 * 49.74993 * 18 16 14 41 41 H 1.07998 * 119.92796 * 359.84830 * 20 19 18 42 42 H 1.07999 * 119.76178 * 179.97438 * 21 20 19 43 43 H 1.09005 * 109.46915 * 90.00480 * 23 22 21 44 44 H 1.09000 * 109.47503 * 210.00436 * 23 22 21 45 45 H 1.09001 * 109.47319 * 330.00452 * 23 22 21 46 46 H 1.07997 * 120.17074 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3374 2.1733 9 14 6.0049 0.8814 1.3818 10 1 6.5987 1.5465 0.1942 11 1 6.3989 1.6168 2.6103 12 1 6.4971 -0.5174 1.4630 13 7 1.6524 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3393 2.6327 -0.4342 16 6 0.0366 3.3387 -2.6544 17 6 -0.5175 2.2957 -3.6271 18 6 -1.0355 4.3910 -2.3691 19 6 -1.2695 5.2431 -3.5883 20 6 -2.4533 5.9412 -3.7239 21 6 -2.6719 6.7275 -4.8407 22 6 -1.7096 6.8237 -5.8306 23 6 -1.9586 7.6852 -7.0417 24 6 -0.5218 6.1313 -5.7092 25 6 -0.2986 5.3361 -4.5863 26 6 0.9664 4.5787 -4.4438 27 8 1.7598 4.4922 -5.3595 28 8 1.2009 3.9858 -3.2454 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8292 -0.0611 2.9499 35 1 2.2719 2.1232 -1.9978 36 1 -1.3893 1.8135 -3.1848 37 1 -0.8051 2.7838 -4.5582 38 1 0.2476 1.5466 -3.8312 39 1 -1.9651 3.8932 -2.0929 40 1 -0.7079 5.0257 -1.5458 41 1 -3.2101 5.8728 -2.9565 42 1 -3.6001 7.2705 -4.9407 43 1 -1.5997 8.6962 -6.8484 44 1 -1.4289 7.2692 -7.8987 45 1 -3.0274 7.7135 -7.2540 46 1 0.2308 6.2052 -6.4803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:45 Heat of formation + Delta-G solvation = -120.650928 kcal Electronic energy + Delta-G solvation = -29087.728945 eV Core-core repulsion = 25134.206694 eV Total energy + Delta-G solvation = -3953.522250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.55847 -40.78749 -39.71702 -38.61265 -37.05403 -35.08872 -34.34053 -33.30355 -32.50417 -32.29372 -29.66103 -28.91138 -27.20942 -25.36470 -25.32381 -24.34353 -22.87394 -22.24133 -21.31393 -20.16705 -19.54583 -18.66990 -18.08769 -17.55639 -17.21137 -16.87006 -16.50839 -16.32748 -16.14126 -15.92529 -15.61827 -15.15208 -14.89148 -14.72367 -14.62127 -14.39852 -13.94867 -13.78903 -13.57187 -13.43393 -13.40582 -13.23266 -13.17921 -12.98669 -12.92061 -12.74569 -12.71602 -12.49827 -12.18705 -12.14605 -12.05986 -11.97769 -11.58326 -11.44858 -11.06980 -10.70638 -10.53458 -10.11635 -9.72616 -9.58372 -8.19117 -6.35415 -0.51312 0.24222 0.97866 1.40718 1.42269 1.44791 1.54608 2.00010 2.21906 2.44536 2.58955 2.97086 3.10092 3.21000 3.44952 3.53635 3.75529 3.81429 3.99628 4.22824 4.27011 4.34167 4.43133 4.49808 4.51582 4.53083 4.58628 4.75185 4.76163 4.82458 4.87586 4.91522 4.91708 5.05811 5.14175 5.25518 5.26639 5.30372 5.42755 5.48107 5.50732 5.57429 5.67400 5.77167 5.85253 5.87380 6.14888 6.17056 6.70495 6.82138 7.24360 7.40322 8.86144 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.020332 B = 0.003078 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.823915 B = 9094.526405 C = 9872.978095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.276 3.724 4 H 0.008 0.992 5 C -0.551 4.551 6 H 0.062 0.938 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.965 3.035 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.276 1.276 13 N -0.692 5.692 14 C 0.522 3.478 15 O -0.556 6.556 16 C 0.115 3.885 17 C -0.171 4.171 18 C -0.091 4.091 19 C -0.042 4.042 20 C -0.118 4.118 21 C -0.071 4.071 22 C -0.101 4.101 23 C -0.113 4.113 24 C -0.062 4.062 25 C -0.190 4.190 26 C 0.531 3.469 27 O -0.482 6.482 28 O -0.369 6.369 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.266 0.734 35 H 0.401 0.599 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.160 0.840 42 H 0.166 0.834 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.089 0.911 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.719 12.012 -16.887 26.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.174 3.826 4 H 0.026 0.974 5 C -0.589 4.589 6 H 0.080 0.920 7 C -0.180 4.180 8 N -0.548 5.548 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.201 1.201 13 N -0.339 5.339 14 C 0.306 3.694 15 O -0.436 6.436 16 C 0.076 3.924 17 C -0.229 4.229 18 C -0.128 4.128 19 C -0.043 4.043 20 C -0.135 4.135 21 C -0.088 4.088 22 C -0.101 4.101 23 C -0.170 4.170 24 C -0.080 4.080 25 C -0.192 4.192 26 C 0.375 3.625 27 O -0.367 6.367 28 O -0.289 6.289 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.235 0.765 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.147 0.853 40 H 0.110 0.890 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.108 0.892 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -15.661 11.816 -16.368 25.550 hybrid contribution 1.765 -0.255 0.289 1.806 sum -13.897 11.561 -16.079 24.193 Atomic orbital electron populations 1.21697 0.96349 0.99546 1.00599 1.21787 0.94343 0.98581 1.01375 1.18500 0.93635 0.89576 0.80934 0.97445 1.21567 0.91662 1.39036 1.06638 0.91976 1.25667 1.03024 0.94317 0.94963 1.70021 1.36802 1.38216 1.09784 0.85397 0.79525 0.77971 0.78069 1.19222 1.20667 1.20103 1.46381 1.15005 1.54639 1.17847 1.19960 0.82635 0.79067 0.87753 1.90712 1.51987 1.61694 1.39185 1.22617 0.84150 0.93756 0.91884 1.22464 1.03517 0.98250 0.98632 1.20936 0.99726 0.95760 0.96343 1.19930 0.94372 0.96907 0.93081 1.21331 0.96090 0.96557 0.99545 1.21719 0.99651 0.95739 0.91704 1.20279 0.93069 0.98279 0.98443 1.20869 1.03994 0.98586 0.93505 1.21242 0.97771 0.93659 0.95350 1.19938 0.94908 1.04851 0.99485 1.21349 0.85705 0.76154 0.79290 1.90766 1.50090 1.59738 1.36125 1.87019 1.38790 1.68853 1.34240 0.93439 0.93321 0.94961 0.94304 0.90758 0.92443 0.76476 0.87522 0.89727 0.90821 0.85255 0.89024 0.82195 0.81641 0.90045 0.91120 0.89233 0.84850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.52 71.98 0.61 -4.68 16 2 C -0.12 -5.92 5.45 30.60 0.17 -5.75 16 3 C 0.28 14.24 2.24 44.25 0.10 14.34 16 4 H 0.01 0.46 7.58 -2.39 -0.02 0.44 16 5 C -0.55 -30.08 8.73 25.60 0.22 -29.85 16 6 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 7 C 0.02 1.14 5.29 84.65 0.45 1.58 16 8 N -0.91 -51.82 11.29 21.45 0.24 -51.58 16 9 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.69 -29.89 4.93 -446.09 -2.20 -32.09 16 14 C 0.52 20.18 5.28 87.66 0.46 20.64 16 15 O -0.56 -23.92 13.41 -3.01 -0.04 -23.96 16 16 C 0.12 3.45 1.04 -11.57 -0.01 3.44 16 17 C -0.17 -4.17 8.19 71.98 0.59 -3.58 16 18 C -0.09 -2.19 4.16 29.78 0.12 -2.06 16 19 C -0.04 -0.88 5.32 -19.62 -0.10 -0.99 16 20 C -0.12 -1.65 9.71 22.26 0.22 -1.44 16 21 C -0.07 -0.79 9.68 22.33 0.22 -0.57 16 22 C -0.10 -1.38 5.88 -19.88 -0.12 -1.50 16 23 C -0.11 -0.89 10.01 71.24 0.71 -0.18 16 24 C -0.06 -1.24 9.29 22.50 0.21 -1.03 16 25 C -0.19 -4.64 5.18 -20.06 -0.10 -4.75 16 26 C 0.53 16.75 6.73 70.45 0.47 17.22 16 27 O -0.48 -17.40 17.40 19.77 0.34 -17.06 16 28 O -0.37 -12.55 9.51 -67.29 -0.64 -13.19 16 29 H 0.05 1.89 5.65 -2.39 -0.01 1.87 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 31 H 0.03 1.46 7.85 -2.39 -0.02 1.45 16 32 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 4.03 5.95 -2.39 -0.01 4.02 16 34 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.40 16.49 7.98 -92.71 -0.74 15.75 16 36 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.08 1.84 6.46 -2.39 -0.02 1.82 16 38 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.13 2.61 8.10 -2.39 -0.02 2.59 16 40 H 0.09 2.43 8.10 -2.39 -0.02 2.41 16 41 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.17 0.70 8.06 -2.91 -0.02 0.68 16 43 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.07 0.57 8.08 -2.39 -0.02 0.55 16 45 H 0.09 0.38 8.09 -2.39 -0.02 0.36 16 46 H 0.13 2.67 7.77 -2.91 -0.02 2.65 16 Total: -1.00 -69.00 372.58 4.21 -64.78 By element: Atomic # 1 Polarization: 26.71 SS G_CDS: 0.26 Total: 26.98 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 4.22 Total: 0.84 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -1.96 Total: -83.67 kcal Atomic # 8 Polarization: -53.87 SS G_CDS: -0.34 Total: -54.21 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -69.00 4.21 -64.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.867 kcal (2) G-P(sol) polarization free energy of solvation -68.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds