Wall clock time and date at job start Tue Mar 31 2020 17:22:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99708 * 2 1 4 4 O 1.20825 * 120.00187 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99702 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.49688 * 324.29146 * 5 3 2 7 7 C 1.53044 * 109.52030 * 204.21569 * 5 3 2 8 8 C 1.53046 * 109.53424 * 178.66645 * 7 5 3 9 9 C 1.52757 * 109.38386 * 61.23956 * 8 7 5 10 10 N 1.46931 * 109.00827 * 305.58780 * 9 8 7 11 11 C 1.34775 * 120.62568 * 233.58538 * 10 9 8 12 12 O 1.21550 * 119.99539 * 183.80963 * 11 10 9 13 13 C 1.47881 * 120.00572 * 3.80803 * 11 10 9 14 14 C 1.39922 * 120.02524 * 138.57186 * 13 11 10 15 15 C 1.38331 * 120.35793 * 179.72321 * 14 13 11 16 16 C 1.37756 * 120.40749 * 0.28198 * 15 14 13 17 17 C 1.40742 * 120.04249 * 359.95330 * 16 15 14 18 18 C 1.41441 * 120.17430 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99607 * 154.78592 * 18 17 16 20 20 C 1.39938 * 120.00478 * 334.78805 * 18 17 16 21 21 N 1.30828 * 119.99310 * 343.34140 * 20 18 17 22 22 Si 1.86796 * 120.00216 * 163.34452 * 20 18 17 23 23 H 1.48499 * 109.47178 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46744 * 119.99886 * 22 20 18 25 25 H 1.48497 * 109.47059 * 239.99963 * 22 20 18 26 26 C 1.38995 * 120.02456 * 318.78475 * 13 11 10 27 27 C 1.46925 * 118.73899 * 53.31062 * 10 9 8 28 28 H 1.09000 * 109.58375 * 186.85898 * 27 10 9 29 29 C 1.52999 * 109.58502 * 66.57442 * 27 10 9 30 30 H 1.09005 * 109.47199 * 60.00032 * 1 2 3 31 31 H 1.09004 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47165 * 300.00009 * 1 2 3 33 33 H 1.09001 * 109.45694 * 298.68259 * 7 5 3 34 34 H 1.08998 * 109.45767 * 58.66136 * 7 5 3 35 35 H 1.09002 * 109.49556 * 181.31979 * 8 7 5 36 36 H 1.08999 * 109.49448 * 301.37684 * 8 7 5 37 37 H 1.09004 * 109.50739 * 185.70857 * 9 8 7 38 38 H 1.09002 * 109.43375 * 65.42410 * 9 8 7 39 39 H 1.08001 * 119.81958 * 0.02562 * 14 13 11 40 40 H 1.07997 * 119.79546 * 180.25578 * 15 14 13 41 41 H 1.08007 * 119.97429 * 179.97438 * 16 15 14 42 42 H 0.97004 * 119.99587 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.20485 * 0.02781 * 26 13 11 44 44 H 1.08996 * 109.47389 * 55.13639 * 29 27 10 45 45 H 1.09001 * 109.46757 * 175.14106 * 29 27 10 46 46 H 1.09001 * 109.47226 * 295.13383 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9735 0.4606 0.5988 7 6 4.0084 2.6152 0.5912 8 6 5.5371 2.6820 0.6214 9 6 6.0773 2.5806 -0.8039 10 7 5.5383 1.3681 -1.4348 11 6 6.3628 0.4610 -1.9950 12 8 5.9019 -0.5030 -2.5744 13 6 7.8281 0.6387 -1.9050 14 6 8.6522 -0.4619 -1.6450 15 6 10.0242 -0.3046 -1.5650 16 6 10.5946 0.9378 -1.7345 17 6 9.7814 2.0573 -1.9919 18 6 10.3642 3.3341 -2.1669 19 1 9.8491 4.0884 -2.7433 20 6 11.6082 3.6201 -1.5933 21 7 12.0820 2.8550 -0.6438 22 14 12.5920 5.0944 -2.1833 23 1 11.8410 5.7930 -3.2571 24 1 12.8150 6.0266 -1.0490 25 1 13.9017 4.6359 -2.7122 26 6 8.3876 1.8998 -2.0741 27 6 4.0838 1.1602 -1.4379 28 1 3.8573 0.1686 -1.8298 29 6 3.4158 2.2226 -2.3130 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.6215 3.4285 -0.0228 34 1 3.6208 2.7098 1.6055 35 1 5.8513 3.6271 1.0645 36 1 5.9257 1.8548 1.2154 37 1 7.1656 2.5259 -0.7776 38 1 5.7670 3.4572 -1.3725 39 1 8.2150 -1.4403 -1.5110 40 1 10.6519 -1.1610 -1.3681 41 1 11.6666 1.0527 -1.6702 42 1 12.9445 3.0530 -0.2464 43 1 7.7551 2.7527 -2.2711 44 1 3.8568 2.2023 -3.3096 45 1 2.3479 2.0159 -2.3839 46 1 3.5666 3.2066 -1.8689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188676707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:47 Heat of formation + Delta-G solvation = -99.184555 kcal Electronic energy + Delta-G solvation = -29006.844306 eV Core-core repulsion = 25054.252907 eV Total energy + Delta-G solvation = -3952.591399 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.12607 -39.86251 -37.78744 -36.97350 -36.41928 -33.81446 -33.04880 -32.42213 -30.02660 -29.71439 -28.60171 -27.56072 -25.46742 -24.86181 -23.63404 -22.31769 -21.47436 -20.86678 -19.90113 -18.51579 -17.80180 -17.35733 -16.77023 -16.62957 -16.24780 -15.63474 -15.31389 -15.03289 -14.77874 -14.50829 -14.03962 -13.85226 -13.69384 -13.25912 -13.21034 -13.13246 -12.85939 -12.53323 -12.39876 -12.34204 -12.11256 -11.85815 -11.72803 -11.45755 -11.29814 -11.24724 -11.01922 -10.98690 -10.76817 -10.72574 -10.53671 -10.47114 -10.37514 -10.25651 -9.58590 -9.30094 -9.06974 -8.42090 -7.62359 -7.56188 -6.87748 -4.50546 1.98700 2.25218 2.48337 2.66204 3.01804 3.06027 3.08341 3.30454 3.58458 3.85079 4.45464 4.50118 4.53092 4.66054 4.86975 4.94173 4.99495 5.06010 5.11914 5.24909 5.31905 5.40740 5.46477 5.50813 5.56386 5.58733 5.82130 5.87589 5.92305 6.03395 6.12614 6.15254 6.19920 6.24812 6.33928 6.39297 6.68935 6.80113 6.86012 6.97934 7.11380 7.29442 7.56597 7.57386 7.74260 7.84575 7.90284 8.04363 8.45006 8.67796 8.73319 8.77041 10.06770 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.003064 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.252733 B = 9137.085024 C = 9893.707425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.473 3.527 4 O -0.504 6.504 5 C -0.091 4.091 6 H 0.108 0.892 7 C -0.106 4.106 8 C -0.133 4.133 9 C 0.077 3.923 10 N -0.604 5.604 11 C 0.572 3.428 12 O -0.552 6.552 13 C -0.108 4.108 14 C -0.181 4.181 15 C -0.111 4.111 16 C -0.139 4.139 17 C 0.103 3.897 18 C -0.461 4.461 19 H 0.080 0.920 20 C 0.076 3.924 21 N -0.794 5.794 22 Si 0.908 3.092 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.272 1.272 26 C -0.201 4.201 27 C 0.152 3.848 28 H 0.106 0.894 29 C -0.165 4.165 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.133 0.867 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.122 0.878 42 H 0.281 0.719 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 -0.155 3.708 14.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.315 3.685 4 O -0.391 6.391 5 C -0.111 4.111 6 H 0.126 0.874 7 C -0.143 4.143 8 C -0.171 4.171 9 C -0.045 4.045 10 N -0.337 5.337 11 C 0.364 3.636 12 O -0.430 6.430 13 C -0.111 4.111 14 C -0.202 4.202 15 C -0.130 4.130 16 C -0.159 4.159 17 C 0.101 3.899 18 C -0.491 4.491 19 H 0.098 0.902 20 C -0.142 4.142 21 N -0.419 5.419 22 Si 0.732 3.268 23 H -0.184 1.184 24 H -0.200 1.200 25 H -0.197 1.197 26 C -0.221 4.221 27 C 0.048 3.952 28 H 0.124 0.876 29 C -0.223 4.223 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.151 0.849 38 H 0.084 0.916 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.140 0.860 42 H 0.092 0.908 43 H 0.126 0.874 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.991 -0.388 3.555 14.440 hybrid contribution 0.188 0.718 -0.021 0.743 sum -13.803 0.330 3.533 14.251 Atomic orbital electron populations 1.23273 0.76468 1.03725 1.02472 1.86564 1.23348 1.33539 1.83884 1.23636 0.91723 0.81301 0.71813 1.90649 1.67068 1.36267 1.45081 1.21490 0.87013 1.02268 1.00351 0.87394 1.21533 0.96680 0.94879 1.01244 1.21872 0.93950 1.03362 0.97913 1.22516 1.03553 0.86321 0.92063 1.48011 1.04696 1.22782 1.58184 1.19002 0.87389 0.80581 0.76619 1.90677 1.78003 1.31098 1.43248 1.19219 0.89764 0.95472 1.06665 1.20345 0.93239 0.96046 1.10523 1.20669 0.93860 0.97006 1.01463 1.21553 1.00282 0.91023 1.03012 1.17532 0.90135 0.93365 0.88871 1.19581 1.02272 0.98150 1.29089 0.90211 1.25893 0.97446 0.97891 0.92925 1.69800 1.18078 1.36430 1.17591 0.86263 0.79789 0.80984 0.79753 1.18362 1.19958 1.19695 1.21272 0.95184 0.94104 1.11554 1.20814 0.81230 1.01576 0.91608 0.87592 1.22217 1.00015 0.99540 1.00497 0.91870 0.88084 0.91943 0.90119 0.91334 0.89835 0.91075 0.84938 0.91572 0.88570 0.88628 0.85983 0.90765 0.87433 0.91428 0.92140 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.19 10.57 -39.24 -0.41 -4.60 16 3 C 0.47 5.97 5.89 36.01 0.21 6.18 16 4 O -0.50 -7.08 15.43 -18.75 -0.29 -7.37 16 5 C -0.09 -1.13 2.56 -91.65 -0.23 -1.37 16 6 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 7 C -0.11 -1.22 4.47 -26.68 -0.12 -1.34 16 8 C -0.13 -1.62 6.06 -26.83 -0.16 -1.78 16 9 C 0.08 1.14 4.66 -3.93 -0.02 1.12 16 10 N -0.60 -9.87 2.68 -166.57 -0.45 -10.32 16 11 C 0.57 11.59 7.34 -12.31 -0.09 11.50 16 12 O -0.55 -12.47 16.37 5.32 0.09 -12.39 16 13 C -0.11 -2.36 5.33 -105.04 -0.56 -2.92 16 14 C -0.18 -4.02 9.65 -38.92 -0.38 -4.39 16 15 C -0.11 -2.48 10.01 -39.72 -0.40 -2.88 16 16 C -0.14 -3.36 8.68 -38.81 -0.34 -3.70 16 17 C 0.10 2.51 5.57 -106.87 -0.59 1.92 16 18 C -0.46 -11.17 9.05 -37.73 -0.34 -11.51 16 19 H 0.08 1.86 7.90 -52.48 -0.41 1.44 16 20 C 0.08 1.77 5.16 -17.34 -0.09 1.68 16 21 N -0.79 -18.99 10.93 55.55 0.61 -18.38 16 22 Si 0.91 17.47 29.59 -169.99 -5.03 12.44 16 23 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 C -0.20 -4.43 7.07 -38.44 -0.27 -4.70 16 27 C 0.15 2.17 2.77 -67.60 -0.19 1.98 16 28 H 0.11 1.67 7.03 -51.93 -0.36 1.31 16 29 C -0.16 -2.13 8.48 37.16 0.32 -1.82 16 30 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 33 H 0.08 0.95 6.19 -51.93 -0.32 0.63 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.13 2.29 3.95 -51.93 -0.20 2.08 16 38 H 0.07 0.89 7.65 -51.93 -0.40 0.49 16 39 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.10 1.89 8.06 -52.49 -0.42 1.46 16 41 H 0.12 3.04 6.15 -52.48 -0.32 2.71 16 42 H 0.28 6.14 8.30 -40.82 -0.34 5.80 16 43 H 0.11 2.17 6.11 -52.49 -0.32 1.85 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.74 7.13 -51.93 -0.37 0.37 16 46 H 0.07 0.84 5.79 -51.93 -0.30 0.54 16 LS Contribution 367.62 15.07 5.54 5.54 Total: -1.00 -28.18 367.62 -8.51 -36.69 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.38 Total: 9.06 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -2.19 Total: -10.67 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: 0.16 Total: -28.70 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.62 Total: -24.36 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.18 -8.51 -36.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188676707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.491 kcal (2) G-P(sol) polarization free energy of solvation -28.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds