Wall clock time and date at job start Tue Mar 31 2020 17:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34225 * 116.99708 * 2 1 4 4 O 1.20825 * 120.00187 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99702 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.49688 * 324.29146 * 5 3 2 7 7 C 1.53044 * 109.52030 * 204.21569 * 5 3 2 8 8 C 1.53046 * 109.53424 * 178.66645 * 7 5 3 9 9 C 1.52757 * 109.38386 * 61.23956 * 8 7 5 10 10 N 1.46931 * 109.00827 * 305.58780 * 9 8 7 11 11 C 1.34775 * 120.62568 * 233.58538 * 10 9 8 12 12 O 1.21550 * 119.99539 * 183.80963 * 11 10 9 13 13 C 1.47881 * 120.00572 * 3.80803 * 11 10 9 14 14 C 1.39922 * 120.02524 * 138.57186 * 13 11 10 15 15 C 1.38331 * 120.35793 * 179.72321 * 14 13 11 16 16 C 1.37756 * 120.40749 * 0.28198 * 15 14 13 17 17 C 1.40742 * 120.04249 * 359.95330 * 16 15 14 18 18 C 1.41441 * 120.17430 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99607 * 154.78592 * 18 17 16 20 20 C 1.39938 * 120.00478 * 334.78805 * 18 17 16 21 21 N 1.30828 * 119.99310 * 343.34140 * 20 18 17 22 22 Si 1.86796 * 120.00216 * 163.34452 * 20 18 17 23 23 H 1.48499 * 109.47178 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46744 * 119.99886 * 22 20 18 25 25 H 1.48497 * 109.47059 * 239.99963 * 22 20 18 26 26 C 1.38995 * 120.02456 * 318.78475 * 13 11 10 27 27 C 1.46925 * 118.73899 * 53.31062 * 10 9 8 28 28 H 1.09000 * 109.58375 * 186.85898 * 27 10 9 29 29 C 1.52999 * 109.58502 * 66.57442 * 27 10 9 30 30 H 1.09005 * 109.47199 * 60.00032 * 1 2 3 31 31 H 1.09004 * 109.47171 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47165 * 300.00009 * 1 2 3 33 33 H 1.09001 * 109.45694 * 298.68259 * 7 5 3 34 34 H 1.08998 * 109.45767 * 58.66136 * 7 5 3 35 35 H 1.09002 * 109.49556 * 181.31979 * 8 7 5 36 36 H 1.08999 * 109.49448 * 301.37684 * 8 7 5 37 37 H 1.09004 * 109.50739 * 185.70857 * 9 8 7 38 38 H 1.09002 * 109.43375 * 65.42410 * 9 8 7 39 39 H 1.08001 * 119.81958 * 0.02562 * 14 13 11 40 40 H 1.07997 * 119.79546 * 180.25578 * 15 14 13 41 41 H 1.08007 * 119.97429 * 179.97438 * 16 15 14 42 42 H 0.97004 * 119.99587 * 179.97438 * 21 20 18 43 43 H 1.07996 * 120.20485 * 0.02781 * 26 13 11 44 44 H 1.08996 * 109.47389 * 55.13639 * 29 27 10 45 45 H 1.09001 * 109.46757 * 175.14106 * 29 27 10 46 46 H 1.09001 * 109.47226 * 295.13383 * 29 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9735 0.4606 0.5988 7 6 4.0084 2.6152 0.5912 8 6 5.5371 2.6820 0.6214 9 6 6.0773 2.5806 -0.8039 10 7 5.5383 1.3681 -1.4348 11 6 6.3628 0.4610 -1.9950 12 8 5.9019 -0.5030 -2.5744 13 6 7.8281 0.6387 -1.9050 14 6 8.6522 -0.4619 -1.6450 15 6 10.0242 -0.3046 -1.5650 16 6 10.5946 0.9378 -1.7345 17 6 9.7814 2.0573 -1.9919 18 6 10.3642 3.3341 -2.1669 19 1 9.8491 4.0884 -2.7433 20 6 11.6082 3.6201 -1.5933 21 7 12.0820 2.8550 -0.6438 22 14 12.5920 5.0944 -2.1833 23 1 11.8410 5.7930 -3.2571 24 1 12.8150 6.0266 -1.0490 25 1 13.9017 4.6359 -2.7122 26 6 8.3876 1.8998 -2.0741 27 6 4.0838 1.1602 -1.4379 28 1 3.8573 0.1686 -1.8298 29 6 3.4158 2.2226 -2.3130 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.6215 3.4285 -0.0228 34 1 3.6208 2.7098 1.6055 35 1 5.8513 3.6271 1.0645 36 1 5.9257 1.8548 1.2154 37 1 7.1656 2.5259 -0.7776 38 1 5.7670 3.4572 -1.3725 39 1 8.2150 -1.4403 -1.5110 40 1 10.6519 -1.1610 -1.3681 41 1 11.6666 1.0527 -1.6702 42 1 12.9445 3.0530 -0.2464 43 1 7.7551 2.7527 -2.2711 44 1 3.8568 2.2023 -3.3096 45 1 2.3479 2.0159 -2.3839 46 1 3.5666 3.2066 -1.8689 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188676707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:46 Heat of formation + Delta-G solvation = -112.243200 kcal Electronic energy + Delta-G solvation = -29007.410571 eV Core-core repulsion = 25054.252907 eV Total energy + Delta-G solvation = -3953.157664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.21968 -41.17543 -39.23367 -38.50823 -37.46389 -35.54999 -34.37455 -33.54349 -31.80950 -31.32170 -29.65591 -28.44029 -27.22559 -26.04076 -24.95908 -23.61008 -22.69075 -22.56206 -21.27251 -19.84490 -19.02466 -18.57774 -17.98218 -17.79054 -17.48361 -17.25011 -16.65059 -16.54597 -16.18710 -15.86386 -15.39453 -15.07596 -14.77203 -14.68143 -14.57181 -14.38446 -14.05439 -13.95079 -13.78873 -13.46253 -13.25517 -13.06439 -13.01461 -12.87176 -12.80617 -12.55939 -12.40354 -12.21075 -12.06346 -12.03970 -11.86242 -11.79925 -11.52632 -11.45332 -11.31531 -11.03750 -10.69095 -9.78477 -9.39554 -9.33282 -8.61890 -6.33990 0.51827 0.94202 0.98403 1.44484 1.50343 1.56042 1.58209 1.90984 2.05204 2.24513 2.75456 3.37661 3.52428 3.64066 3.70316 3.79288 3.98645 3.99960 4.10935 4.26329 4.28195 4.31821 4.39027 4.43014 4.48100 4.53357 4.57316 4.69172 4.77399 4.83680 4.89110 4.95938 4.97755 5.04390 5.10742 5.12517 5.19302 5.27450 5.34342 5.38253 5.47568 5.59786 5.81974 6.01693 6.05241 6.22781 6.33908 6.62617 6.63840 6.92369 6.95756 7.12430 8.34848 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.019559 B = 0.003064 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.252733 B = 9137.085024 C = 9893.707425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.367 6.367 3 C 0.479 3.521 4 O -0.518 6.518 5 C -0.088 4.088 6 H 0.109 0.891 7 C -0.099 4.099 8 C -0.126 4.126 9 C 0.074 3.926 10 N -0.592 5.592 11 C 0.570 3.430 12 O -0.582 6.582 13 C -0.113 4.113 14 C -0.193 4.193 15 C -0.110 4.110 16 C -0.164 4.164 17 C 0.079 3.921 18 C -0.488 4.488 19 H 0.082 0.918 20 C 0.040 3.960 21 N -0.821 5.821 22 Si 0.977 3.023 23 H -0.258 1.258 24 H -0.267 1.267 25 H -0.269 1.269 26 C -0.193 4.193 27 C 0.151 3.849 28 H 0.089 0.911 29 C -0.157 4.157 30 H 0.064 0.936 31 H 0.128 0.872 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.064 0.936 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.289 0.711 43 H 0.123 0.877 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.927 1.085 4.291 15.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.321 3.679 4 O -0.406 6.406 5 C -0.108 4.108 6 H 0.127 0.873 7 C -0.136 4.136 8 C -0.164 4.164 9 C -0.047 4.047 10 N -0.324 5.324 11 C 0.361 3.639 12 O -0.463 6.463 13 C -0.116 4.116 14 C -0.213 4.213 15 C -0.128 4.128 16 C -0.183 4.183 17 C 0.076 3.924 18 C -0.517 4.517 19 H 0.100 0.900 20 C -0.176 4.176 21 N -0.447 5.447 22 Si 0.799 3.201 23 H -0.181 1.181 24 H -0.191 1.191 25 H -0.194 1.194 26 C -0.213 4.213 27 C 0.047 3.953 28 H 0.107 0.893 29 C -0.215 4.215 30 H 0.083 0.917 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.141 0.859 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.231 0.861 4.161 15.813 hybrid contribution 0.452 0.266 -0.168 0.551 sum -14.779 1.127 3.993 15.351 Atomic orbital electron populations 1.23589 0.74493 1.05731 1.02826 1.86549 1.25338 1.32998 1.83475 1.23490 0.91548 0.81377 0.71441 1.90643 1.67356 1.36725 1.45901 1.21436 0.87342 1.03118 0.98908 0.87270 1.21500 0.95834 0.94166 1.02135 1.21825 0.94467 1.04214 0.95855 1.22577 1.02135 0.85995 0.94041 1.47990 1.05443 1.22213 1.56719 1.18785 0.87116 0.80990 0.77017 1.90657 1.78264 1.32490 1.44924 1.19452 0.91002 0.95288 1.05826 1.20539 0.93379 0.96633 1.10735 1.20868 0.94268 0.97137 1.00548 1.21525 0.99761 0.91936 1.05112 1.17856 0.91190 0.93770 0.89551 1.19811 1.03534 0.98333 1.30034 0.90023 1.26657 0.97877 1.00519 0.92538 1.69848 1.18676 1.37941 1.18248 0.85217 0.78048 0.77583 0.79276 1.18150 1.19150 1.19440 1.21404 0.94600 0.94752 1.10500 1.20911 0.79778 1.01297 0.93313 0.89273 1.22150 1.00176 0.99446 0.99733 0.91726 0.85387 0.91394 0.89817 0.89773 0.87824 0.91731 0.87445 0.89778 0.87872 0.86501 0.87321 0.90058 0.85949 0.92238 0.91345 0.90325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 113.37 1.20 1.58 16 2 O -0.37 -8.00 10.57 -51.36 -0.54 -8.54 16 3 C 0.48 11.19 5.89 71.24 0.42 11.61 16 4 O -0.52 -13.44 15.43 21.97 0.34 -13.10 16 5 C -0.09 -2.04 2.56 -11.46 -0.03 -2.07 16 6 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 7 C -0.10 -2.02 4.47 30.62 0.14 -1.88 16 8 C -0.13 -2.80 6.06 30.53 0.19 -2.62 16 9 C 0.07 2.07 4.66 86.22 0.40 2.47 16 10 N -0.59 -18.97 2.68 -799.19 -2.14 -21.11 16 11 C 0.57 23.15 7.34 86.80 0.64 23.79 16 12 O -0.58 -26.58 16.37 -3.87 -0.06 -26.65 16 13 C -0.11 -4.95 5.33 -20.13 -0.11 -5.06 16 14 C -0.19 -8.63 9.65 22.70 0.22 -8.41 16 15 C -0.11 -4.95 10.01 22.18 0.22 -4.73 16 16 C -0.16 -8.10 8.68 22.77 0.20 -7.91 16 17 C 0.08 3.90 5.57 -21.32 -0.12 3.78 16 18 C -0.49 -23.88 9.05 23.47 0.21 -23.67 16 19 H 0.08 3.82 7.90 -2.91 -0.02 3.80 16 20 C 0.04 1.84 5.16 85.25 0.44 2.28 16 21 N -0.82 -39.72 10.93 21.82 0.24 -39.48 16 22 Si 0.98 35.45 29.59 68.60 2.03 37.48 16 23 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 24 H -0.27 -9.29 7.11 99.48 0.71 -8.58 16 25 H -0.27 -9.60 7.11 99.48 0.71 -8.90 16 26 C -0.19 -8.58 7.07 23.01 0.16 -8.42 16 27 C 0.15 4.15 2.77 44.97 0.12 4.27 16 28 H 0.09 2.80 7.03 -2.39 -0.02 2.78 16 29 C -0.16 -3.82 8.48 71.98 0.61 -3.21 16 30 H 0.06 0.92 8.13 -2.38 -0.02 0.90 16 31 H 0.13 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16 33 H 0.08 1.71 6.19 -2.39 -0.01 1.69 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 37 H 0.11 3.66 3.95 -2.38 -0.01 3.65 16 38 H 0.08 2.09 7.65 -2.39 -0.02 2.07 16 39 H 0.10 4.41 8.06 -2.91 -0.02 4.38 16 40 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 41 H 0.11 5.60 6.15 -2.91 -0.02 5.58 16 42 H 0.29 12.63 8.30 -92.71 -0.77 11.87 16 43 H 0.12 4.94 6.11 -2.91 -0.02 4.92 16 44 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.07 1.57 7.13 -2.39 -0.02 1.55 16 46 H 0.08 1.75 5.79 -2.39 -0.01 1.73 16 Total: -1.00 -60.81 367.62 5.77 -55.04 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 1.00 Total: 34.54 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 4.91 Total: -18.19 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -1.91 Total: -60.59 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -0.27 Total: -48.29 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.03 Total: 37.48 kcal Total: -60.81 5.77 -55.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188676707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.200 kcal (2) G-P(sol) polarization free energy of solvation -60.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds