Wall clock time and date at job start Tue Mar 31 2020 15:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21553 * 119.99867 * 359.97438 * 14 13 3 16 16 C 1.47845 * 120.00337 * 179.97438 * 14 13 3 17 17 C 1.39585 * 120.14207 * 359.71739 * 16 14 13 18 18 C 1.37956 * 119.85112 * 179.78932 * 17 16 14 19 19 C 1.38365 * 120.14426 * 0.49382 * 18 17 16 20 20 C 1.50697 * 119.85120 * 179.72092 * 19 18 17 21 21 H 1.09005 * 115.54675 * 154.34642 * 20 19 18 22 22 C 1.52994 * 117.50302 * 8.63654 * 20 19 18 23 23 C 1.52987 * 60.00109 * 252.51183 * 22 20 19 24 24 H 1.09002 * 117.49905 * 252.50724 * 23 22 20 25 25 C 1.50703 * 117.52086 * 107.48261 * 23 22 20 26 26 O 1.20832 * 119.99815 * 291.37259 * 25 23 22 27 27 O 1.34226 * 120.00543 * 111.36447 * 25 23 22 28 28 C 1.45197 * 117.00244 * 179.97438 * 27 25 23 29 29 C 1.38361 * 120.29229 * 359.73356 * 19 18 17 30 30 C 1.37958 * 120.14387 * 0.02739 * 29 19 18 31 31 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 32 32 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 33 33 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 35 35 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 36 36 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 37 37 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 38 38 H 1.08003 * 120.07241 * 0.02562 * 17 16 14 39 39 H 1.07996 * 119.92599 * 180.22819 * 18 17 16 40 40 H 1.09006 * 117.49933 * 0.02562 * 22 20 19 41 41 H 1.09006 * 117.49828 * 145.01865 * 22 20 19 42 42 H 1.08996 * 109.47026 * 180.02562 * 28 27 25 43 43 H 1.09002 * 109.47428 * 300.00467 * 28 27 25 44 44 H 1.09009 * 109.46565 * 60.00704 * 28 27 25 45 45 H 1.07997 * 119.92841 * 180.02562 * 29 19 18 46 46 H 1.08002 * 120.07206 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3410 2.6325 0.4322 16 6 0.0439 3.3248 2.6305 17 6 0.9307 3.3580 3.7080 18 6 0.5610 3.9798 4.8827 19 6 -0.6895 4.5607 4.9977 20 6 -1.0888 5.2327 6.2861 21 1 -1.8443 6.0131 6.1947 22 6 -0.0064 5.4179 7.3513 23 6 -1.1081 4.3757 7.5533 24 1 -1.8759 4.5925 8.2960 25 6 -0.7267 2.9241 7.4176 26 8 -0.4211 2.4782 6.3369 27 8 -0.7264 2.1263 8.4971 28 6 -0.3489 0.7394 8.2918 29 6 -1.5750 4.5272 3.9350 30 6 -1.2159 3.9130 2.7531 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.8295 -0.0694 -2.9455 37 1 2.2720 2.1230 1.9978 38 1 1.9055 2.9012 3.6209 39 1 1.2475 4.0093 5.7158 40 1 0.9948 5.0541 7.1201 41 1 -0.0495 6.3205 7.9610 42 1 -0.3908 0.2070 9.2419 43 1 -1.0378 0.2761 7.5854 44 1 0.6649 0.6939 7.8937 45 1 -2.5494 4.9829 4.0311 46 1 -1.9082 3.8871 1.9245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192209119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:49 Heat of formation + Delta-G solvation = -62.919435 kcal Electronic energy + Delta-G solvation = -28330.572080 eV Core-core repulsion = 24379.553255 eV Total energy + Delta-G solvation = -3951.018825 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12598 -39.66207 -38.58780 -36.96273 -36.11519 -34.95421 -32.48446 -31.38898 -30.61984 -30.18955 -28.36499 -26.96489 -24.96043 -24.39114 -22.92522 -22.60164 -21.42887 -20.61222 -19.86736 -19.22438 -18.22271 -17.73445 -16.91097 -16.55060 -15.95200 -15.70254 -15.24822 -14.93981 -14.71501 -14.44355 -14.40785 -13.92664 -13.62134 -13.48221 -13.36498 -12.93403 -12.82716 -12.64310 -12.38519 -12.22040 -11.92180 -11.53816 -11.48116 -11.20263 -11.13394 -11.03533 -10.96751 -10.91387 -10.78365 -10.69288 -10.51901 -10.29065 -10.11893 -9.57590 -9.02494 -8.96289 -8.67414 -8.45602 -8.27999 -7.73108 -6.08791 -4.18110 1.08939 1.61930 1.94238 2.39233 3.21721 3.27573 3.32657 3.33987 3.62983 4.09923 4.16970 4.27596 4.36291 4.42621 4.49031 4.64197 4.78021 4.87843 4.96668 5.04047 5.09911 5.22197 5.23486 5.30739 5.37601 5.48323 5.54053 5.60839 5.84982 6.03942 6.16530 6.18107 6.45361 6.53015 6.54665 6.64905 6.68528 6.73759 7.09214 7.12824 7.26529 7.42929 7.51888 7.56619 7.66558 7.79533 7.95284 8.22582 8.73340 8.82208 9.20177 9.49190 10.96522 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.002843 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.633021 B = 9846.505394 C =10199.718352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.702 5.702 14 C 0.541 3.459 15 O -0.547 6.547 16 C -0.116 4.116 17 C -0.093 4.093 18 C -0.072 4.072 19 C -0.047 4.047 20 C -0.076 4.076 21 H 0.129 0.871 22 C -0.144 4.144 23 C -0.160 4.160 24 H 0.138 0.862 25 C 0.477 3.523 26 O -0.475 6.475 27 O -0.361 6.361 28 C 0.036 3.964 29 C -0.118 4.118 30 C -0.072 4.072 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.022 0.978 34 H 0.099 0.901 35 H 0.030 0.970 36 H 0.265 0.735 37 H 0.387 0.613 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.121 0.879 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 8.006 23.291 26.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.350 5.350 14 C 0.327 3.673 15 O -0.428 6.428 16 C -0.119 4.119 17 C -0.111 4.111 18 C -0.090 4.090 19 C -0.047 4.047 20 C -0.094 4.094 21 H 0.147 0.853 22 C -0.181 4.181 23 C -0.179 4.179 24 H 0.156 0.844 25 C 0.319 3.681 26 O -0.360 6.360 27 O -0.278 6.278 28 C -0.057 4.057 29 C -0.136 4.136 30 C -0.091 4.091 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.117 0.883 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.220 0.780 38 H 0.141 0.859 39 H 0.131 0.869 40 H 0.126 0.874 41 H 0.134 0.866 42 H 0.118 0.882 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.139 0.861 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.782 7.667 22.063 24.954 hybrid contribution 1.309 -0.414 0.370 1.422 sum -7.473 7.254 22.433 24.732 Atomic orbital electron populations 1.21841 0.98345 0.98000 1.01306 1.21932 0.92651 0.99786 1.02228 1.18793 0.94154 0.89200 0.80977 0.93211 1.21205 0.90730 1.38915 1.06433 0.92186 1.24883 0.98573 0.94813 0.95383 1.69891 1.35168 1.37486 1.09409 0.86518 0.84914 0.78295 0.77416 1.20193 1.21137 1.20181 1.46448 1.14478 1.55558 1.18478 1.18222 0.82884 0.79249 0.86930 1.90720 1.51569 1.60348 1.40119 1.20279 0.95582 1.01133 0.94887 1.21195 0.99100 0.98261 0.92586 1.20572 0.95461 0.96506 0.96414 1.18922 0.94386 0.98373 0.93006 1.21235 1.01803 0.99217 0.87118 0.85320 1.23254 0.94875 0.98766 1.01189 1.21833 1.05410 0.86802 1.03853 0.84408 1.22698 0.74745 0.88375 0.82245 1.90858 1.42695 1.75447 1.27028 1.86456 1.80136 1.22964 1.38289 1.23272 1.01158 0.77997 1.03299 1.20741 0.99035 1.01009 0.92819 1.21142 0.95358 0.95201 0.97407 0.94225 0.93128 0.95906 0.88252 0.95104 0.92531 0.77977 0.85904 0.86931 0.87447 0.86595 0.88199 0.91739 0.91717 0.86072 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.51 37.16 0.32 -2.93 16 2 C -0.13 -3.22 5.45 -26.73 -0.15 -3.36 16 3 C 0.27 7.05 2.24 -69.09 -0.16 6.89 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.43 8.73 -34.44 -0.30 -14.73 16 6 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.09 11.28 55.43 0.63 -24.46 16 9 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 N -0.70 -15.56 4.97 -55.88 -0.28 -15.83 16 14 C 0.54 11.77 6.34 -12.33 -0.08 11.69 16 15 O -0.55 -13.54 13.48 5.32 0.07 -13.47 16 16 C -0.12 -2.07 5.87 -104.97 -0.62 -2.68 16 17 C -0.09 -1.43 9.54 -39.18 -0.37 -1.80 16 18 C -0.07 -0.94 6.16 -39.64 -0.24 -1.18 16 19 C -0.05 -0.55 4.37 -104.53 -0.46 -1.01 16 20 C -0.08 -0.60 6.04 -91.78 -0.55 -1.16 16 21 H 0.13 0.74 8.14 -51.93 -0.42 0.31 16 22 C -0.14 -0.90 9.57 -26.74 -0.26 -1.15 16 23 C -0.16 -1.19 6.30 -91.78 -0.58 -1.77 16 24 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 25 C 0.48 5.04 7.60 36.01 0.27 5.31 16 26 O -0.47 -6.46 11.46 -18.76 -0.21 -6.68 16 27 O -0.36 -3.50 10.56 -39.25 -0.41 -3.92 16 28 C 0.04 0.29 10.56 101.05 1.07 1.35 16 29 C -0.12 -1.52 9.72 -39.64 -0.39 -1.90 16 30 C -0.07 -1.15 9.60 -39.19 -0.38 -1.53 16 31 H 0.04 0.93 5.65 -51.93 -0.29 0.63 16 32 H 0.05 1.25 7.84 -51.93 -0.41 0.85 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 2.74 5.94 -51.93 -0.31 2.43 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.39 7.60 6.57 -40.82 -0.27 7.33 16 38 H 0.12 1.77 6.41 -52.48 -0.34 1.44 16 39 H 0.11 1.28 5.76 -52.49 -0.30 0.98 16 40 H 0.11 0.74 6.16 -51.93 -0.32 0.42 16 41 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 44 H 0.06 0.53 8.13 -51.92 -0.42 0.11 16 45 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.13 2.14 7.65 -52.49 -0.40 1.74 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -33.26 373.29 -8.94 -42.20 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.38 Total: 8.93 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -2.96 Total: -8.25 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.35 Total: -40.30 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.56 Total: -24.06 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.26 -8.94 -42.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192209119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.720 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds