Wall clock time and date at job start Tue Mar 31 2020 15:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 H 1.09004 * 109.47131 * 305.00119 * 3 2 1 5 5 C 1.50702 * 109.47245 * 185.00230 * 3 2 1 6 6 H 1.08002 * 120.00299 * 240.00501 * 5 3 2 7 7 C 1.37884 * 119.99942 * 59.72060 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48504 * 109.47196 * 60.00645 * 9 7 5 11 11 H 1.48504 * 109.46887 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47679 * 300.00280 * 9 7 5 13 13 N 1.46491 * 109.47268 * 65.00268 * 3 2 1 14 14 C 1.34780 * 120.00170 * 275.00492 * 13 3 2 15 15 O 1.21553 * 119.99867 * 359.97438 * 14 13 3 16 16 C 1.47845 * 120.00337 * 179.97438 * 14 13 3 17 17 C 1.39585 * 120.14207 * 359.71739 * 16 14 13 18 18 C 1.37956 * 119.85112 * 179.78932 * 17 16 14 19 19 C 1.38365 * 120.14426 * 0.49382 * 18 17 16 20 20 C 1.50697 * 119.85120 * 179.72092 * 19 18 17 21 21 H 1.09005 * 115.54675 * 154.34642 * 20 19 18 22 22 C 1.52994 * 117.50302 * 8.63654 * 20 19 18 23 23 C 1.52987 * 60.00109 * 252.51183 * 22 20 19 24 24 H 1.09002 * 117.49905 * 252.50724 * 23 22 20 25 25 C 1.50703 * 117.52086 * 107.48261 * 23 22 20 26 26 O 1.20832 * 119.99815 * 291.37259 * 25 23 22 27 27 O 1.34226 * 120.00543 * 111.36447 * 25 23 22 28 28 C 1.45197 * 117.00244 * 179.97438 * 27 25 23 29 29 C 1.38361 * 120.29229 * 359.73356 * 19 18 17 30 30 C 1.37958 * 120.14387 * 0.02739 * 29 19 18 31 31 H 1.09005 * 109.46737 * 299.99648 * 1 2 3 32 32 H 1.08996 * 109.47100 * 59.99805 * 1 2 3 33 33 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46737 * 240.00352 * 2 1 3 35 35 H 1.08996 * 109.47570 * 120.00444 * 2 1 3 36 36 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 37 37 H 0.97002 * 120.00109 * 94.99223 * 13 3 2 38 38 H 1.08003 * 120.07241 * 0.02562 * 17 16 14 39 39 H 1.07996 * 119.92599 * 180.22819 * 18 17 16 40 40 H 1.09006 * 117.49933 * 0.02562 * 22 20 19 41 41 H 1.09006 * 117.49828 * 145.01865 * 22 20 19 42 42 H 1.08996 * 109.47026 * 180.02562 * 28 27 25 43 43 H 1.09002 * 109.47428 * 300.00467 * 28 27 25 44 44 H 1.09009 * 109.46565 * 60.00704 * 28 27 25 45 45 H 1.07997 * 119.92841 * 180.02562 * 29 19 18 46 46 H 1.08002 * 120.07206 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1473 1.8888 0.6522 7 6 4.1435 0.8733 -1.2254 8 7 3.4063 0.3320 -2.1705 9 14 6.0054 0.8687 -1.3752 10 1 6.5928 0.1354 -0.2252 11 1 6.3984 0.2005 -2.6418 12 1 6.5053 2.2671 -1.3780 13 7 1.6525 2.0974 1.2517 14 6 0.4352 2.6643 1.3670 15 8 -0.3410 2.6325 0.4322 16 6 0.0439 3.3248 2.6305 17 6 0.9307 3.3580 3.7080 18 6 0.5610 3.9798 4.8827 19 6 -0.6895 4.5607 4.9977 20 6 -1.0888 5.2327 6.2861 21 1 -1.8443 6.0131 6.1947 22 6 -0.0064 5.4179 7.3513 23 6 -1.1081 4.3757 7.5533 24 1 -1.8759 4.5925 8.2960 25 6 -0.7267 2.9241 7.4176 26 8 -0.4211 2.4782 6.3369 27 8 -0.7264 2.1263 8.4971 28 6 -0.3489 0.7394 8.2918 29 6 -1.5750 4.5272 3.9350 30 6 -1.2159 3.9130 2.7531 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.8295 -0.0694 -2.9455 37 1 2.2720 2.1230 1.9978 38 1 1.9055 2.9012 3.6209 39 1 1.2475 4.0093 5.7158 40 1 0.9948 5.0541 7.1201 41 1 -0.0495 6.3205 7.9610 42 1 -0.3908 0.2070 9.2419 43 1 -1.0378 0.2761 7.5854 44 1 0.6649 0.6939 7.8937 45 1 -2.5494 4.9829 4.0311 46 1 -1.9082 3.8871 1.9245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192209119.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:48 Heat of formation + Delta-G solvation = -82.637299 kcal Electronic energy + Delta-G solvation = -28331.427111 eV Core-core repulsion = 24379.553255 eV Total energy + Delta-G solvation = -3951.873856 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.92734 -41.05054 -39.77969 -37.94286 -36.99273 -36.81691 -34.40970 -33.14941 -31.78328 -31.59098 -29.11808 -28.87874 -26.00936 -25.29161 -24.73435 -23.70468 -22.59738 -21.72670 -21.27918 -20.75598 -19.48466 -18.83695 -18.00229 -17.58021 -17.29448 -17.27625 -16.47091 -16.29847 -16.04197 -15.90158 -15.60941 -15.25557 -14.82537 -14.60741 -14.43781 -14.20944 -14.17034 -14.02198 -13.60182 -13.48689 -13.22161 -13.13143 -12.93435 -12.88451 -12.67720 -12.42926 -12.20754 -12.10106 -11.99392 -11.78378 -11.70304 -11.61912 -11.48817 -11.33579 -11.10244 -10.75775 -10.54342 -9.81359 -9.69873 -9.29588 -8.18121 -6.36320 -0.08128 0.53327 1.13775 1.42789 1.45431 1.53266 1.74577 2.01566 2.34010 2.61837 2.75805 3.09989 3.12484 3.46732 3.74819 3.81704 3.90827 3.92566 4.03222 4.08355 4.30918 4.31634 4.36338 4.43362 4.47438 4.51421 4.60617 4.70470 4.70917 4.83796 4.90695 4.92191 5.02083 5.10284 5.11512 5.20113 5.38812 5.41605 5.45062 5.48407 5.53444 5.58375 5.61929 5.74855 5.89827 6.02822 6.12482 6.70130 6.80714 6.93852 7.29697 7.51269 8.87408 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.015005 B = 0.002843 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.633021 B = 9846.505394 C =10199.718352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.001 1.001 5 C -0.553 4.553 6 H 0.070 0.930 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.973 3.027 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.271 1.271 13 N -0.700 5.700 14 C 0.538 3.462 15 O -0.588 6.588 16 C -0.148 4.148 17 C -0.100 4.100 18 C -0.071 4.071 19 C -0.031 4.031 20 C -0.089 4.089 21 H 0.161 0.839 22 C -0.126 4.126 23 C -0.158 4.158 24 H 0.170 0.830 25 C 0.471 3.529 26 O -0.515 6.515 27 O -0.362 6.362 28 C 0.032 3.968 29 C -0.117 4.117 30 C -0.085 4.085 31 H 0.037 0.963 32 H 0.028 0.972 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.038 0.962 36 H 0.266 0.734 37 H 0.399 0.601 38 H 0.124 0.876 39 H 0.132 0.868 40 H 0.098 0.902 41 H 0.152 0.848 42 H 0.130 0.870 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.155 0.845 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.142 9.585 27.220 29.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.017 0.983 5 C -0.591 4.591 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.798 3.202 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.349 5.349 14 C 0.327 3.673 15 O -0.471 6.471 16 C -0.151 4.151 17 C -0.118 4.118 18 C -0.089 4.089 19 C -0.032 4.032 20 C -0.107 4.107 21 H 0.179 0.821 22 C -0.162 4.162 23 C -0.176 4.176 24 H 0.187 0.813 25 C 0.315 3.685 26 O -0.404 6.404 27 O -0.279 6.279 28 C -0.061 4.061 29 C -0.134 4.134 30 C -0.105 4.105 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.057 0.943 36 H 0.075 0.925 37 H 0.235 0.765 38 H 0.142 0.858 39 H 0.150 0.850 40 H 0.117 0.883 41 H 0.169 0.831 42 H 0.148 0.852 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.172 0.828 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.535 9.258 26.050 28.934 hybrid contribution 1.158 -0.882 -0.722 1.625 sum -7.376 8.375 25.328 27.678 Atomic orbital electron populations 1.21672 0.97158 0.99139 1.00081 1.21786 0.93623 0.99169 1.01307 1.18407 0.93863 0.89128 0.81062 0.98325 1.21532 0.91210 1.39248 1.07079 0.91207 1.25802 1.03617 0.94166 0.94832 1.70045 1.37253 1.38034 1.09905 0.85383 0.78691 0.78511 0.77661 1.18876 1.20923 1.19589 1.46225 1.15263 1.55747 1.17647 1.18876 0.81977 0.78425 0.88003 1.90679 1.52553 1.61879 1.41988 1.19977 0.97428 1.03917 0.93780 1.21267 0.98850 0.98846 0.92887 1.20829 0.96556 0.95719 0.95788 1.19403 0.93184 0.96121 0.94470 1.21404 1.04025 1.00069 0.85216 0.82143 1.23438 0.93740 0.99258 0.99797 1.22020 1.06956 0.84750 1.03885 0.81296 1.23438 0.73618 0.89658 0.81755 1.90849 1.44707 1.76403 1.28397 1.86463 1.79826 1.23566 1.38033 1.23436 1.00403 0.77558 1.04749 1.21069 1.00618 1.00126 0.91631 1.21205 0.94556 0.96066 0.98625 0.94440 0.95323 0.93395 0.90539 0.94334 0.92465 0.76522 0.85767 0.85014 0.88338 0.83063 0.85202 0.92810 0.92373 0.82760 0.86338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.51 71.98 0.61 -5.45 16 2 C -0.12 -6.33 5.45 30.59 0.17 -6.17 16 3 C 0.28 15.31 2.24 44.25 0.10 15.41 16 4 H 0.00 -0.07 7.58 -2.38 -0.02 -0.09 16 5 C -0.55 -30.66 8.73 25.60 0.22 -30.44 16 6 H 0.07 3.64 7.74 -2.91 -0.02 3.61 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -53.74 11.28 21.45 0.24 -53.50 16 9 Si 0.97 43.10 29.54 68.60 2.03 45.13 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 13 N -0.70 -32.67 4.97 -448.98 -2.23 -34.90 16 14 C 0.54 24.88 6.34 86.79 0.55 25.43 16 15 O -0.59 -31.25 13.48 -3.88 -0.05 -31.30 16 16 C -0.15 -5.50 5.87 -20.09 -0.12 -5.62 16 17 C -0.10 -3.11 9.54 22.53 0.21 -2.89 16 18 C -0.07 -1.76 6.16 22.23 0.14 -1.63 16 19 C -0.03 -0.67 4.37 -19.81 -0.09 -0.76 16 20 C -0.09 -1.02 6.04 -11.55 -0.07 -1.09 16 21 H 0.16 0.89 8.14 -2.38 -0.02 0.87 16 22 C -0.13 -0.94 9.57 30.59 0.29 -0.65 16 23 C -0.16 -1.65 6.30 -11.55 -0.07 -1.73 16 24 H 0.17 0.77 8.14 -2.39 -0.02 0.75 16 25 C 0.47 8.79 7.60 71.24 0.54 9.33 16 26 O -0.52 -13.37 11.46 21.95 0.25 -13.12 16 27 O -0.36 -6.20 10.56 -51.38 -0.54 -6.75 16 28 C 0.03 0.46 10.56 113.37 1.20 1.66 16 29 C -0.12 -2.81 9.72 22.23 0.22 -2.59 16 30 C -0.09 -2.80 9.60 22.52 0.22 -2.59 16 31 H 0.04 1.83 5.65 -2.38 -0.01 1.82 16 32 H 0.03 1.49 7.84 -2.39 -0.02 1.47 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.08 4.41 5.94 -2.38 -0.01 4.40 16 35 H 0.04 1.92 8.14 -2.39 -0.02 1.91 16 36 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 37 H 0.40 16.32 6.57 -92.71 -0.61 15.71 16 38 H 0.12 3.67 6.41 -2.91 -0.02 3.66 16 39 H 0.13 2.72 5.76 -2.91 -0.02 2.70 16 40 H 0.10 0.97 6.16 -2.38 -0.01 0.95 16 41 H 0.15 0.16 8.14 -2.38 -0.02 0.14 16 42 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 0.89 8.13 -2.39 -0.02 0.87 16 44 H 0.06 0.91 8.13 -2.38 -0.02 0.89 16 45 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 46 H 0.12 4.09 7.65 -2.91 -0.02 4.07 16 Total: -1.00 -77.24 373.29 4.66 -72.57 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: 0.40 Total: 30.30 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 4.57 Total: -8.43 kcal Atomic # 7 Polarization: -86.41 SS G_CDS: -1.99 Total: -88.40 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -0.34 Total: -51.17 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -77.24 4.66 -72.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192209119.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.063 kcal (2) G-P(sol) polarization free energy of solvation -77.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds