Wall clock time and date at job start Tue Mar 31 2020 15:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08993 * 109.47768 * 305.00075 * 3 2 1 5 5 C 1.50709 * 109.46788 * 184.99743 * 3 2 1 6 6 H 1.07993 * 120.00197 * 240.00011 * 5 3 2 7 7 C 1.37877 * 119.99452 * 60.00810 * 5 3 2 8 8 N 1.31511 * 120.00437 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47169 * 59.99342 * 9 7 5 11 11 H 1.48493 * 109.47407 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46874 * 299.99809 * 9 7 5 13 13 N 1.46501 * 109.47174 * 65.00624 * 3 2 1 14 14 C 1.34780 * 119.99542 * 274.99814 * 13 3 2 15 15 O 1.21550 * 119.99815 * 359.97438 * 14 13 3 16 16 C 1.47844 * 119.99990 * 180.02562 * 14 13 3 17 17 C 1.39580 * 120.14400 * 359.71553 * 16 14 13 18 18 C 1.37959 * 119.85267 * 179.74905 * 17 16 14 19 19 C 1.38353 * 120.14257 * 0.53124 * 18 17 16 20 20 C 1.50703 * 119.85279 * 179.71873 * 19 18 17 21 21 H 1.08995 * 115.55432 * 205.69412 * 20 19 18 22 22 C 1.52999 * 117.49741 * 351.40797 * 20 19 18 23 23 C 1.52994 * 60.00248 * 107.48522 * 22 20 19 24 24 H 1.09002 * 117.51937 * 252.51818 * 23 22 20 25 25 C 1.50706 * 117.49909 * 107.49053 * 23 22 20 26 26 O 1.20831 * 119.99550 * 291.37851 * 25 23 22 27 27 O 1.34229 * 120.00188 * 111.37823 * 25 23 22 28 28 C 1.45197 * 116.99758 * 179.97438 * 27 25 23 29 29 C 1.38359 * 120.29447 * 359.74794 * 19 18 17 30 30 C 1.37949 * 120.14651 * 359.97185 * 29 19 18 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 33 33 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 34 34 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 35 35 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 36 36 H 0.96995 * 120.00258 * 180.02562 * 8 7 5 37 37 H 0.96998 * 120.00675 * 94.98903 * 13 3 2 38 38 H 1.08005 * 120.07213 * 0.02562 * 17 16 14 39 39 H 1.07997 * 119.92569 * 180.28134 * 18 17 16 40 40 H 1.09003 * 117.49451 * 214.97724 * 22 20 19 41 41 H 1.08999 * 117.50377 * 359.97438 * 22 20 19 42 42 H 1.08998 * 109.47248 * 60.00025 * 28 27 25 43 43 H 1.09003 * 109.46850 * 179.97438 * 28 27 25 44 44 H 1.09000 * 109.46956 * 299.99710 * 28 27 25 45 45 H 1.07999 * 119.92617 * 180.02562 * 29 19 18 46 46 H 1.07998 * 120.07860 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3369 -2.1729 9 14 6.0049 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2350 11 1 6.3978 0.2171 -2.6504 12 1 6.4994 2.2817 -1.3821 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3410 2.6324 0.4321 16 6 0.0441 3.3257 2.6302 17 6 0.9312 3.3598 3.7073 18 6 0.5621 3.9831 4.8814 19 6 -0.6882 4.5641 4.9963 20 6 -1.0870 5.2378 6.2840 21 1 -2.1583 5.2808 6.4800 22 6 -0.1545 5.0727 7.4858 23 6 -0.2342 6.4162 6.7582 24 1 0.6150 6.7045 6.1386 25 6 -0.9397 7.5474 7.4610 26 8 -2.1350 7.5010 7.6311 27 8 -0.2401 8.6064 7.8980 28 6 -0.9854 9.6587 8.5655 29 6 -1.5745 4.5288 3.9343 30 6 -1.2158 3.9137 2.7528 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 3.8293 -0.0615 -2.9496 37 1 2.2719 2.1231 1.9979 38 1 1.9060 2.9030 3.6203 39 1 1.2493 4.0141 5.7140 40 1 -0.6125 5.0069 8.4728 41 1 0.7471 4.4766 7.3452 42 1 -1.4801 9.2506 9.4469 43 1 -0.3019 10.4523 8.8677 44 1 -1.7333 10.0630 7.8835 45 1 -2.5488 4.9846 4.0304 46 1 -1.9082 3.8872 1.9245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192209121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:53 Heat of formation + Delta-G solvation = -76.449777 kcal Electronic energy + Delta-G solvation = -27194.575484 eV Core-core repulsion = 23242.969939 eV Total energy + Delta-G solvation = -3951.605545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.07895 -39.97226 -38.72290 -37.26543 -36.24853 -35.04173 -32.58600 -31.50951 -30.83865 -30.33494 -28.52952 -27.04159 -25.15353 -24.42235 -22.98791 -22.67461 -21.48840 -20.71532 -20.02258 -19.33199 -18.33835 -17.90278 -17.17676 -16.73738 -16.27759 -15.81375 -15.40533 -14.95800 -14.80814 -14.55706 -14.43443 -14.03853 -13.81976 -13.60679 -13.33831 -13.03140 -12.89190 -12.70688 -12.60192 -12.36030 -11.99029 -11.72005 -11.52568 -11.28351 -11.23447 -11.22837 -11.08159 -11.00439 -10.86125 -10.82585 -10.76771 -10.34033 -10.18380 -9.63814 -9.12123 -9.05304 -8.99969 -8.67645 -8.50915 -7.83458 -6.13203 -4.22962 0.85908 1.36770 1.69734 2.23307 3.08511 3.24654 3.30269 3.31085 3.52419 4.02626 4.12716 4.15477 4.21684 4.36214 4.37328 4.60944 4.67392 4.68743 4.76674 4.87458 4.92558 5.10243 5.17929 5.24055 5.34616 5.36245 5.44232 5.48581 5.71134 5.82625 5.95133 5.97297 6.31162 6.39654 6.43617 6.46461 6.48251 6.66552 6.85541 7.04681 7.20003 7.34148 7.35681 7.42801 7.60850 7.72297 7.88967 8.16906 8.63577 8.75786 9.09326 9.44200 10.92040 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.002175 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.066344 B =12872.365066 C =13805.935041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.051 0.949 5 C -0.535 4.535 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.701 5.701 14 C 0.540 3.460 15 O -0.544 6.544 16 C -0.118 4.118 17 C -0.086 4.086 18 C -0.125 4.125 19 C -0.050 4.050 20 C -0.074 4.074 21 H 0.129 0.871 22 C -0.139 4.139 23 C -0.161 4.161 24 H 0.140 0.860 25 C 0.493 3.507 26 O -0.507 6.507 27 O -0.354 6.354 28 C 0.035 3.965 29 C -0.116 4.116 30 C -0.063 4.063 31 H 0.023 0.977 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.100 0.900 36 H 0.265 0.735 37 H 0.387 0.613 38 H 0.130 0.870 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.118 0.882 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.064 0.936 45 H 0.127 0.873 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.407 12.154 21.267 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.325 3.675 15 O -0.424 6.424 16 C -0.121 4.121 17 C -0.104 4.104 18 C -0.143 4.143 19 C -0.050 4.050 20 C -0.093 4.093 21 H 0.147 0.853 22 C -0.176 4.176 23 C -0.180 4.180 24 H 0.158 0.842 25 C 0.337 3.663 26 O -0.394 6.394 27 O -0.271 6.271 28 C -0.059 4.059 29 C -0.134 4.134 30 C -0.082 4.082 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.118 0.882 36 H 0.075 0.925 37 H 0.221 0.779 38 H 0.148 0.852 39 H 0.145 0.855 40 H 0.125 0.875 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.145 0.855 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.274 12.027 20.436 24.803 hybrid contribution 1.208 0.210 0.346 1.274 sum -6.066 12.236 20.782 24.868 Atomic orbital electron populations 1.21849 0.98334 0.98089 1.01267 1.21936 0.92640 0.99708 1.02322 1.18825 0.94259 0.89234 0.80854 0.93160 1.21177 0.90631 1.39211 1.06352 0.92153 1.24884 0.98614 0.94790 0.95374 1.69879 1.35228 1.37419 1.09327 0.86511 0.84837 0.78304 0.77458 1.20168 1.21134 1.20189 1.46468 1.14344 1.55422 1.18586 1.18176 0.83036 0.79418 0.86863 1.90739 1.51542 1.60150 1.39964 1.20418 0.95523 1.01015 0.95117 1.21375 0.99224 0.97500 0.92337 1.20931 0.96052 0.99335 0.97986 1.19110 0.94417 0.98120 0.93360 1.21199 0.98778 0.96440 0.92835 0.85267 1.23261 1.02629 0.94613 0.97112 1.21911 1.04031 0.87065 1.04958 0.84178 1.22636 0.85825 0.82243 0.75636 1.90675 1.15980 1.78959 1.53826 1.86500 1.42287 1.29489 1.68801 1.23308 0.97378 0.88277 0.96907 1.20913 0.99748 1.00179 0.92524 1.21293 0.95329 0.94106 0.97445 0.95815 0.94272 0.93115 0.95020 0.88216 0.92478 0.77935 0.85172 0.85468 0.87486 0.86372 0.91830 0.87897 0.91738 0.85493 0.84503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.08 5.45 -26.73 -0.15 -3.22 16 3 C 0.27 6.72 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.54 -13.92 8.73 -34.44 -0.30 -14.22 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.44 11.29 55.43 0.63 -23.81 16 9 Si 0.90 20.36 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 N -0.70 -14.40 4.97 -55.88 -0.28 -14.68 16 14 C 0.54 10.80 6.34 -12.33 -0.08 10.72 16 15 O -0.54 -12.70 13.48 5.32 0.07 -12.63 16 16 C -0.12 -1.84 5.87 -104.97 -0.62 -2.46 16 17 C -0.09 -1.08 9.54 -39.18 -0.37 -1.46 16 18 C -0.13 -1.28 9.28 -39.64 -0.37 -1.65 16 19 C -0.05 -0.51 5.62 -104.53 -0.59 -1.10 16 20 C -0.07 -0.64 5.55 -91.77 -0.51 -1.15 16 21 H 0.13 1.16 7.67 -51.93 -0.40 0.76 16 22 C -0.14 -0.92 9.56 -26.73 -0.26 -1.17 16 23 C -0.16 -1.29 5.93 -91.77 -0.54 -1.84 16 24 H 0.14 1.02 8.14 -51.93 -0.42 0.59 16 25 C 0.49 4.80 7.74 36.01 0.28 5.08 16 26 O -0.51 -6.13 16.01 -18.75 -0.30 -6.43 16 27 O -0.35 -3.11 10.57 -39.26 -0.41 -3.53 16 28 C 0.03 0.21 10.56 101.05 1.07 1.27 16 29 C -0.12 -1.33 9.72 -39.64 -0.39 -1.71 16 30 C -0.06 -0.89 9.60 -39.19 -0.38 -1.27 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 33 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 34 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.39 6.86 6.57 -40.82 -0.27 6.59 16 38 H 0.13 1.48 6.41 -52.48 -0.34 1.15 16 39 H 0.13 0.95 6.00 -52.49 -0.31 0.63 16 40 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.12 0.61 6.16 -51.93 -0.32 0.29 16 42 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 43 H 0.10 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.39 8.13 -51.93 -0.42 -0.04 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.14 1.99 7.65 -52.49 -0.40 1.59 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -31.91 381.26 -9.06 -40.97 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.36 Total: 7.73 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: -3.13 Total: -8.70 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.35 Total: -38.49 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.64 Total: -22.59 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.91 -9.06 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192209121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.480 kcal (2) G-P(sol) polarization free energy of solvation -31.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds