Wall clock time and date at job start Tue Mar 31 2020 15:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08993 * 109.47768 * 305.00075 * 3 2 1 5 5 C 1.50709 * 109.46788 * 184.99743 * 3 2 1 6 6 H 1.07993 * 120.00197 * 240.00011 * 5 3 2 7 7 C 1.37877 * 119.99452 * 60.00810 * 5 3 2 8 8 N 1.31511 * 120.00437 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47169 * 59.99342 * 9 7 5 11 11 H 1.48493 * 109.47407 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46874 * 299.99809 * 9 7 5 13 13 N 1.46501 * 109.47174 * 65.00624 * 3 2 1 14 14 C 1.34780 * 119.99542 * 274.99814 * 13 3 2 15 15 O 1.21550 * 119.99815 * 359.97438 * 14 13 3 16 16 C 1.47844 * 119.99990 * 180.02562 * 14 13 3 17 17 C 1.39580 * 120.14400 * 359.71553 * 16 14 13 18 18 C 1.37959 * 119.85267 * 179.74905 * 17 16 14 19 19 C 1.38353 * 120.14257 * 0.53124 * 18 17 16 20 20 C 1.50703 * 119.85279 * 179.71873 * 19 18 17 21 21 H 1.08995 * 115.55432 * 205.69412 * 20 19 18 22 22 C 1.52999 * 117.49741 * 351.40797 * 20 19 18 23 23 C 1.52994 * 60.00248 * 107.48522 * 22 20 19 24 24 H 1.09002 * 117.51937 * 252.51818 * 23 22 20 25 25 C 1.50706 * 117.49909 * 107.49053 * 23 22 20 26 26 O 1.20831 * 119.99550 * 291.37851 * 25 23 22 27 27 O 1.34229 * 120.00188 * 111.37823 * 25 23 22 28 28 C 1.45197 * 116.99758 * 179.97438 * 27 25 23 29 29 C 1.38359 * 120.29447 * 359.74794 * 19 18 17 30 30 C 1.37949 * 120.14651 * 359.97185 * 29 19 18 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 33 33 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 34 34 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 35 35 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 36 36 H 0.96995 * 120.00258 * 180.02562 * 8 7 5 37 37 H 0.96998 * 120.00675 * 94.98903 * 13 3 2 38 38 H 1.08005 * 120.07213 * 0.02562 * 17 16 14 39 39 H 1.07997 * 119.92569 * 180.28134 * 18 17 16 40 40 H 1.09003 * 117.49451 * 214.97724 * 22 20 19 41 41 H 1.08999 * 117.50377 * 359.97438 * 22 20 19 42 42 H 1.08998 * 109.47248 * 60.00025 * 28 27 25 43 43 H 1.09003 * 109.46850 * 179.97438 * 28 27 25 44 44 H 1.09000 * 109.46956 * 299.99710 * 28 27 25 45 45 H 1.07999 * 119.92617 * 180.02562 * 29 19 18 46 46 H 1.07998 * 120.07860 * 180.02562 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3369 -2.1729 9 14 6.0049 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2350 11 1 6.3978 0.2171 -2.6504 12 1 6.4994 2.2817 -1.3821 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3410 2.6324 0.4321 16 6 0.0441 3.3257 2.6302 17 6 0.9312 3.3598 3.7073 18 6 0.5621 3.9831 4.8814 19 6 -0.6882 4.5641 4.9963 20 6 -1.0870 5.2378 6.2840 21 1 -2.1583 5.2808 6.4800 22 6 -0.1545 5.0727 7.4858 23 6 -0.2342 6.4162 6.7582 24 1 0.6150 6.7045 6.1386 25 6 -0.9397 7.5474 7.4610 26 8 -2.1350 7.5010 7.6311 27 8 -0.2401 8.6064 7.8980 28 6 -0.9854 9.6587 8.5655 29 6 -1.5745 4.5288 3.9343 30 6 -1.2158 3.9137 2.7528 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.8934 -0.5138 -0.8900 36 1 3.8293 -0.0615 -2.9496 37 1 2.2719 2.1231 1.9979 38 1 1.9060 2.9030 3.6203 39 1 1.2493 4.0141 5.7140 40 1 -0.6125 5.0069 8.4728 41 1 0.7471 4.4766 7.3452 42 1 -1.4801 9.2506 9.4469 43 1 -0.3019 10.4523 8.8677 44 1 -1.7333 10.0630 7.8835 45 1 -2.5488 4.9846 4.0304 46 1 -1.9082 3.8872 1.9245 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192209121.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:52 Heat of formation + Delta-G solvation = -94.302590 kcal Electronic energy + Delta-G solvation = -27195.349640 eV Core-core repulsion = 23242.969939 eV Total energy + Delta-G solvation = -3952.379701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79679 -41.17336 -39.92065 -38.09174 -37.11253 -36.80286 -34.38989 -33.13984 -31.84139 -31.64954 -29.15313 -28.85648 -26.11543 -25.30362 -24.70642 -23.63062 -22.61513 -21.70815 -21.28974 -20.83774 -19.46112 -18.95917 -17.88471 -17.85324 -17.37522 -17.30297 -16.73455 -16.26970 -16.25115 -15.76865 -15.65812 -15.07101 -14.87956 -14.57178 -14.39600 -14.38281 -14.08242 -13.87390 -13.58274 -13.40876 -13.33805 -13.15356 -12.91886 -12.88604 -12.64293 -12.54575 -12.18942 -12.11003 -12.04298 -11.84957 -11.81940 -11.60780 -11.58037 -11.46969 -11.06032 -10.75809 -10.51166 -9.94486 -9.78699 -9.51236 -8.14698 -6.32429 -0.17756 0.42604 0.99186 1.46355 1.48291 1.55983 1.62178 1.98033 2.36075 2.62234 2.69061 3.03754 3.14815 3.44564 3.56646 3.74020 3.87128 3.91808 4.00818 4.08443 4.24201 4.28666 4.31575 4.41675 4.48703 4.54763 4.56640 4.68493 4.72375 4.75187 4.81031 4.93469 5.03943 5.07177 5.10642 5.24568 5.31341 5.34937 5.42817 5.45697 5.54963 5.56277 5.61649 5.79107 5.89936 5.95539 6.16764 6.65960 6.74616 6.97102 7.33762 7.55023 8.90512 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.018914 B = 0.002175 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.066344 B =12872.365066 C =13805.935041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.277 3.723 4 H -0.002 1.002 5 C -0.548 4.548 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.971 3.029 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.697 5.697 14 C 0.537 3.463 15 O -0.589 6.589 16 C -0.146 4.146 17 C -0.082 4.082 18 C -0.114 4.114 19 C -0.033 4.033 20 C -0.088 4.088 21 H 0.123 0.877 22 C -0.117 4.117 23 C -0.162 4.162 24 H 0.153 0.847 25 C 0.492 3.508 26 O -0.538 6.538 27 O -0.360 6.360 28 C 0.027 3.973 29 C -0.117 4.117 30 C -0.075 4.075 31 H 0.046 0.954 32 H 0.041 0.959 33 H 0.025 0.975 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.265 0.735 37 H 0.403 0.597 38 H 0.143 0.857 39 H 0.167 0.833 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.065 0.935 43 H 0.131 0.869 44 H 0.060 0.940 45 H 0.144 0.856 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.657 12.869 24.805 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.159 4.159 3 C 0.174 3.826 4 H 0.015 0.985 5 C -0.586 4.586 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.187 1.187 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.346 5.346 14 C 0.325 3.675 15 O -0.471 6.471 16 C -0.149 4.149 17 C -0.101 4.101 18 C -0.132 4.132 19 C -0.033 4.033 20 C -0.106 4.106 21 H 0.141 0.859 22 C -0.153 4.153 23 C -0.181 4.181 24 H 0.170 0.830 25 C 0.337 3.663 26 O -0.428 6.428 27 O -0.276 6.276 28 C -0.066 4.066 29 C -0.135 4.135 30 C -0.094 4.094 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.044 0.956 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.239 0.761 38 H 0.161 0.839 39 H 0.185 0.815 40 H 0.133 0.867 41 H 0.160 0.840 42 H 0.083 0.917 43 H 0.149 0.851 44 H 0.078 0.922 45 H 0.162 0.838 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -5.507 12.762 24.024 27.755 hybrid contribution 0.571 0.115 -0.649 0.872 sum -4.936 12.877 23.375 27.140 Atomic orbital electron populations 1.21686 0.97167 0.99144 1.00153 1.21785 0.93594 0.99114 1.01427 1.18411 0.93843 0.89185 0.81161 0.98459 1.21529 0.91202 1.39081 1.06825 0.90855 1.25792 1.03411 0.94367 0.95002 1.70042 1.37174 1.38219 1.09848 0.85407 0.78982 0.78434 0.77566 1.18735 1.21350 1.19676 1.46190 1.15192 1.55562 1.17682 1.18860 0.82060 0.78532 0.88004 1.90707 1.52655 1.61727 1.42046 1.20084 0.97214 1.03513 0.94117 1.21536 0.99075 0.97396 0.92093 1.21288 0.96410 0.97507 0.97962 1.19340 0.94008 0.96530 0.93441 1.21103 0.99045 0.97523 0.92928 0.85860 1.23448 1.02430 0.93014 0.96441 1.21981 1.03751 0.86951 1.05393 0.82976 1.22992 0.85510 0.82665 0.75157 1.90665 1.17286 1.79628 1.55206 1.86493 1.42663 1.29713 1.68752 1.23571 0.98099 0.88260 0.96633 1.21086 1.00917 0.99675 0.91822 1.21249 0.94805 0.95105 0.98238 0.93488 0.94006 0.95594 0.93906 0.90836 0.92602 0.76107 0.83889 0.81547 0.86657 0.84043 0.91672 0.85069 0.92151 0.83848 0.86196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.74 8.51 71.98 0.61 -5.13 16 2 C -0.12 -5.98 5.45 30.60 0.17 -5.82 16 3 C 0.28 14.33 2.24 44.25 0.10 14.42 16 4 H 0.00 -0.15 7.58 -2.39 -0.02 -0.17 16 5 C -0.55 -28.77 8.73 25.60 0.22 -28.54 16 6 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 7 C 0.01 0.77 5.29 84.66 0.45 1.22 16 8 N -0.91 -52.25 11.29 21.45 0.24 -52.00 16 9 Si 0.97 41.60 29.54 68.60 2.03 43.63 16 10 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 13 N -0.70 -29.20 4.97 -448.97 -2.23 -31.43 16 14 C 0.54 22.27 6.34 86.79 0.55 22.82 16 15 O -0.59 -29.21 13.48 -3.87 -0.05 -29.26 16 16 C -0.15 -4.58 5.87 -20.09 -0.12 -4.70 16 17 C -0.08 -1.89 9.54 22.53 0.21 -1.68 16 18 C -0.11 -1.89 9.28 22.23 0.21 -1.69 16 19 C -0.03 -0.58 5.62 -19.81 -0.11 -0.69 16 20 C -0.09 -1.23 5.55 -11.54 -0.06 -1.29 16 21 H 0.12 1.95 7.67 -2.39 -0.02 1.93 16 22 C -0.12 -1.02 9.56 30.59 0.29 -0.73 16 23 C -0.16 -2.06 5.93 -11.54 -0.07 -2.13 16 24 H 0.15 1.60 8.14 -2.39 -0.02 1.58 16 25 C 0.49 8.57 7.74 71.24 0.55 9.12 16 26 O -0.54 -12.34 16.01 21.95 0.35 -11.99 16 27 O -0.36 -5.56 10.57 -51.41 -0.54 -6.10 16 28 C 0.03 0.28 10.56 113.37 1.20 1.47 16 29 C -0.12 -2.54 9.72 22.23 0.22 -2.32 16 30 C -0.07 -2.15 9.60 22.52 0.22 -1.93 16 31 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.04 1.88 5.64 -2.39 -0.01 1.87 16 33 H 0.02 1.28 7.84 -2.39 -0.02 1.26 16 34 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 4.07 5.95 -2.39 -0.01 4.06 16 36 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 37 H 0.40 14.02 6.57 -92.71 -0.61 13.41 16 38 H 0.14 2.85 6.41 -2.91 -0.02 2.83 16 39 H 0.17 1.46 6.00 -2.91 -0.02 1.45 16 40 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.14 0.60 6.16 -2.39 -0.01 0.58 16 42 H 0.06 0.64 8.13 -2.39 -0.02 0.62 16 43 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 0.66 8.13 -2.39 -0.02 0.64 16 45 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 46 H 0.12 3.75 7.65 -2.91 -0.02 3.73 16 Total: -1.00 -73.07 381.26 4.83 -68.25 By element: Atomic # 1 Polarization: 26.11 SS G_CDS: 0.40 Total: 26.51 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 4.63 Total: -7.59 kcal Atomic # 7 Polarization: -81.44 SS G_CDS: -1.99 Total: -83.43 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -0.24 Total: -47.36 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -73.07 4.83 -68.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192209121.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.056 kcal (2) G-P(sol) polarization free energy of solvation -73.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds