Wall clock time and date at job start Tue Mar 31 2020 15:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 H 1.08997 * 109.47066 * 304.99560 * 3 2 1 5 5 C 1.50697 * 109.46952 * 184.99918 * 3 2 1 6 6 H 1.08007 * 119.99869 * 239.99904 * 5 3 2 7 7 C 1.37878 * 120.00351 * 59.99930 * 5 3 2 8 8 N 1.31517 * 119.99517 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47452 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47333 * 120.00006 * 9 7 5 12 12 H 1.48500 * 109.47066 * 239.99499 * 9 7 5 13 13 N 1.46501 * 109.47207 * 64.99831 * 3 2 1 14 14 C 1.34776 * 119.99686 * 275.00090 * 13 3 2 15 15 O 1.21548 * 120.00627 * 359.97438 * 14 13 3 16 16 C 1.47848 * 119.99893 * 180.02562 * 14 13 3 17 17 C 1.39575 * 120.14558 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85214 * 180.02562 * 17 16 14 19 19 C 1.38365 * 120.14727 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.85539 * 179.72406 * 19 18 17 21 21 H 1.09011 * 115.55051 * 25.58347 * 20 19 18 22 22 C 1.53002 * 117.50012 * 171.25060 * 20 19 18 23 23 C 1.53002 * 117.50179 * 239.91372 * 20 19 18 24 24 H 1.08999 * 117.49949 * 145.02421 * 23 20 19 25 25 C 1.50701 * 117.49566 * 359.97438 * 23 20 19 26 26 O 1.20826 * 119.99886 * 0.02562 * 25 23 20 27 27 O 1.34220 * 119.99633 * 179.97438 * 25 23 20 28 28 C 1.45208 * 116.99952 * 180.02562 * 27 25 23 29 29 C 1.38364 * 120.29020 * 0.02562 * 19 18 17 30 30 C 1.37957 * 120.14261 * 0.02562 * 29 19 18 31 31 H 1.08994 * 109.47144 * 300.00668 * 1 2 3 32 32 H 1.09001 * 109.46800 * 60.00445 * 1 2 3 33 33 H 1.08995 * 109.47402 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47144 * 239.99332 * 2 1 3 35 35 H 1.09001 * 109.46800 * 119.99555 * 2 1 3 36 36 H 0.97004 * 119.99638 * 179.97438 * 8 7 5 37 37 H 0.96994 * 119.99916 * 94.99845 * 13 3 2 38 38 H 1.08000 * 120.07330 * 359.97438 * 17 16 14 39 39 H 1.08004 * 119.92815 * 180.02562 * 18 17 16 40 40 H 1.08998 * 117.49846 * 214.98050 * 22 20 19 41 41 H 1.08998 * 117.49936 * 0.02562 * 22 20 19 42 42 H 1.09001 * 109.46809 * 300.00494 * 28 27 25 43 43 H 1.09001 * 109.46727 * 60.00170 * 28 27 25 44 44 H 1.09003 * 109.47293 * 180.02562 * 28 27 25 45 45 H 1.07993 * 119.92279 * 179.97438 * 29 19 18 46 46 H 1.08000 * 120.06785 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8799 -1.3810 10 1 6.5989 1.5451 -0.1935 11 1 6.4963 -0.5192 -1.4624 12 1 6.4001 1.6154 -2.6090 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3668 15 8 -0.3410 2.6327 0.4319 16 6 0.0442 3.3259 2.6299 17 6 -1.2159 3.9135 2.7526 18 6 -1.5742 4.5297 3.9337 19 6 -0.6879 4.5655 4.9956 20 6 -1.0838 5.2457 6.2807 21 1 -2.1551 5.2950 6.4758 22 6 -0.1535 5.0791 7.4839 23 6 -0.2251 6.4213 6.7514 24 1 -0.7314 7.2438 7.2566 25 6 0.9522 6.8100 5.8947 26 8 1.1873 6.2002 4.8785 27 8 1.7388 7.8343 6.2601 28 6 2.8542 8.1531 5.3867 29 6 0.5628 3.9849 4.8805 30 6 0.9340 3.3665 3.7045 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.8294 -0.0613 -2.9497 37 1 2.2719 2.1232 1.9977 38 1 -1.9086 3.8866 1.9244 39 1 -2.5492 4.9844 4.0301 40 1 -0.6127 5.0192 8.4706 41 1 0.7451 4.4778 7.3459 42 1 3.5145 7.2891 5.3106 43 1 2.4781 8.4112 4.3967 44 1 3.4074 8.9978 5.7973 45 1 1.2501 4.0167 5.7129 46 1 1.9106 2.9141 3.6159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192209123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:58:00 Heat of formation + Delta-G solvation = -62.771603 kcal Electronic energy + Delta-G solvation = -28299.558764 eV Core-core repulsion = 24348.546350 eV Total energy + Delta-G solvation = -3951.012415 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.11999 -39.65882 -38.58405 -36.95602 -36.10680 -34.95552 -32.48454 -31.39094 -30.61875 -30.19019 -28.35155 -26.96732 -24.95420 -24.38874 -22.92991 -22.60068 -21.42852 -20.60820 -19.86521 -19.22515 -18.21689 -17.73216 -16.90215 -16.53982 -15.95735 -15.70113 -15.23431 -14.93722 -14.71899 -14.49534 -14.36883 -13.91284 -13.57665 -13.47535 -13.37578 -13.05476 -12.68363 -12.62601 -12.45305 -12.21804 -11.91790 -11.54644 -11.46632 -11.21627 -11.14151 -11.03321 -10.93014 -10.91301 -10.79985 -10.69016 -10.50801 -10.27506 -10.12685 -9.58088 -9.01328 -8.96121 -8.67168 -8.46577 -8.27414 -7.73143 -6.09272 -4.18271 1.08971 1.62094 1.95110 2.40325 3.21938 3.25310 3.33032 3.35920 3.62986 4.09815 4.17511 4.27692 4.36516 4.42894 4.48873 4.64796 4.78145 4.89538 4.98517 5.04156 5.10105 5.22041 5.24130 5.31452 5.38376 5.48491 5.54114 5.60980 5.85082 6.04057 6.17630 6.18423 6.44769 6.52335 6.54753 6.65022 6.68524 6.73219 7.08891 7.12294 7.26332 7.42574 7.51756 7.57719 7.66771 7.79276 7.95380 8.22294 8.73454 8.82416 9.20213 9.49161 10.96170 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.003065 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.893623 B = 9134.478392 C =10594.739386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.541 3.459 15 O -0.547 6.547 16 C -0.115 4.115 17 C -0.073 4.073 18 C -0.118 4.118 19 C -0.047 4.047 20 C -0.076 4.076 21 H 0.129 0.871 22 C -0.144 4.144 23 C -0.160 4.160 24 H 0.138 0.862 25 C 0.477 3.523 26 O -0.474 6.474 27 O -0.361 6.361 28 C 0.036 3.964 29 C -0.070 4.070 30 C -0.093 4.093 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.022 0.978 34 H 0.099 0.901 35 H 0.031 0.969 36 H 0.263 0.737 37 H 0.387 0.613 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.113 0.887 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.537 12.305 21.638 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.350 5.350 14 C 0.327 3.673 15 O -0.428 6.428 16 C -0.119 4.119 17 C -0.092 4.092 18 C -0.136 4.136 19 C -0.048 4.048 20 C -0.094 4.094 21 H 0.147 0.853 22 C -0.181 4.181 23 C -0.179 4.179 24 H 0.156 0.844 25 C 0.319 3.681 26 O -0.360 6.360 27 O -0.279 6.279 28 C -0.057 4.057 29 C -0.088 4.088 30 C -0.112 4.112 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.117 0.883 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.220 0.780 38 H 0.150 0.850 39 H 0.139 0.861 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.118 0.882 45 H 0.131 0.869 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.922 11.989 20.412 24.664 hybrid contribution 1.563 0.187 0.106 1.577 sum -5.360 12.176 20.519 24.454 Atomic orbital electron populations 1.21842 0.98331 0.98007 1.01310 1.21929 0.92661 0.99739 1.02238 1.18804 0.94197 0.89213 0.80994 0.93234 1.21279 0.90751 1.38815 1.06274 0.92098 1.24885 0.98572 0.94843 0.95393 1.69913 1.34974 1.37720 1.09335 0.86408 0.84949 0.77737 0.78093 1.19778 1.20872 1.20897 1.46447 1.14465 1.55553 1.18495 1.18220 0.82898 0.79205 0.86960 1.90718 1.51624 1.60308 1.40106 1.20279 0.95539 1.01194 0.94837 1.21140 0.95448 0.95220 0.97342 1.20742 0.99347 1.00735 0.92752 1.18924 0.94579 0.97967 0.93303 1.21235 0.97828 0.96927 0.93365 0.85332 1.23268 1.02547 0.95122 0.97160 1.21847 0.97133 0.94814 1.04100 0.84404 1.22693 0.82740 0.77846 0.84815 1.90859 1.70248 1.50294 1.24584 1.86454 1.39813 1.49211 1.52371 1.23277 0.86596 1.01642 0.94219 1.20568 0.94916 0.95967 0.97378 1.21191 0.98858 0.98521 0.92629 0.94216 0.93144 0.95872 0.88275 0.95063 0.92653 0.77971 0.84999 0.86075 0.86604 0.87458 0.91708 0.91708 0.88200 0.86940 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.51 37.16 0.32 -2.88 16 2 C -0.13 -3.18 5.45 -26.73 -0.15 -3.33 16 3 C 0.27 7.02 2.24 -69.08 -0.15 6.87 16 4 H 0.05 1.49 7.58 -51.93 -0.39 1.10 16 5 C -0.53 -14.42 8.73 -34.44 -0.30 -14.72 16 6 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.08 11.29 55.43 0.63 -24.45 16 9 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.70 -15.55 4.97 -55.88 -0.28 -15.83 16 14 C 0.54 11.76 6.34 -12.33 -0.08 11.69 16 15 O -0.55 -13.54 13.48 5.32 0.07 -13.47 16 16 C -0.12 -2.06 5.87 -104.97 -0.62 -2.68 16 17 C -0.07 -1.16 9.60 -39.19 -0.38 -1.54 16 18 C -0.12 -1.51 9.72 -39.64 -0.39 -1.90 16 19 C -0.05 -0.56 4.39 -104.53 -0.46 -1.02 16 20 C -0.08 -0.60 6.03 -91.77 -0.55 -1.16 16 21 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 22 C -0.14 -0.90 9.58 -26.69 -0.26 -1.15 16 23 C -0.16 -1.20 6.30 -91.73 -0.58 -1.78 16 24 H 0.14 0.71 8.14 -51.93 -0.42 0.29 16 25 C 0.48 5.09 7.59 36.01 0.27 5.37 16 26 O -0.47 -6.54 11.43 -18.75 -0.21 -6.75 16 27 O -0.36 -3.56 10.57 -39.23 -0.41 -3.97 16 28 C 0.04 0.30 10.56 101.05 1.07 1.36 16 29 C -0.07 -0.92 6.13 -39.64 -0.24 -1.17 16 30 C -0.09 -1.44 9.54 -39.19 -0.37 -1.81 16 31 H 0.04 0.91 5.64 -51.93 -0.29 0.61 16 32 H 0.05 1.24 7.84 -51.93 -0.41 0.83 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 2.72 5.95 -51.93 -0.31 2.41 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.39 7.60 6.57 -40.82 -0.27 7.33 16 38 H 0.13 2.14 7.65 -52.49 -0.40 1.74 16 39 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 40 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.11 0.74 6.17 -51.93 -0.32 0.42 16 42 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 43 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.11 1.28 5.74 -52.49 -0.30 0.98 16 46 H 0.12 1.78 6.41 -52.49 -0.34 1.44 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -33.32 373.26 -8.94 -42.25 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -6.38 Total: 8.83 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -2.96 Total: -8.14 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.35 Total: -40.28 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.56 Total: -24.19 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.32 -8.94 -42.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192209123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.517 kcal (2) G-P(sol) polarization free energy of solvation -33.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds