Wall clock time and date at job start Tue Mar 31 2020 15:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47162 * 2 1 4 4 H 1.08997 * 109.47066 * 304.99560 * 3 2 1 5 5 C 1.50697 * 109.46952 * 184.99918 * 3 2 1 6 6 H 1.08007 * 119.99869 * 239.99904 * 5 3 2 7 7 C 1.37878 * 120.00351 * 59.99930 * 5 3 2 8 8 N 1.31517 * 119.99517 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00080 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47452 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47333 * 120.00006 * 9 7 5 12 12 H 1.48500 * 109.47066 * 239.99499 * 9 7 5 13 13 N 1.46501 * 109.47207 * 64.99831 * 3 2 1 14 14 C 1.34776 * 119.99686 * 275.00090 * 13 3 2 15 15 O 1.21548 * 120.00627 * 359.97438 * 14 13 3 16 16 C 1.47848 * 119.99893 * 180.02562 * 14 13 3 17 17 C 1.39575 * 120.14558 * 180.02562 * 16 14 13 18 18 C 1.37955 * 119.85214 * 180.02562 * 17 16 14 19 19 C 1.38365 * 120.14727 * 359.97438 * 18 17 16 20 20 C 1.50694 * 119.85539 * 179.72406 * 19 18 17 21 21 H 1.09011 * 115.55051 * 25.58347 * 20 19 18 22 22 C 1.53002 * 117.50012 * 171.25060 * 20 19 18 23 23 C 1.53002 * 117.50179 * 239.91372 * 20 19 18 24 24 H 1.08999 * 117.49949 * 145.02421 * 23 20 19 25 25 C 1.50701 * 117.49566 * 359.97438 * 23 20 19 26 26 O 1.20826 * 119.99886 * 0.02562 * 25 23 20 27 27 O 1.34220 * 119.99633 * 179.97438 * 25 23 20 28 28 C 1.45208 * 116.99952 * 180.02562 * 27 25 23 29 29 C 1.38364 * 120.29020 * 0.02562 * 19 18 17 30 30 C 1.37957 * 120.14261 * 0.02562 * 29 19 18 31 31 H 1.08994 * 109.47144 * 300.00668 * 1 2 3 32 32 H 1.09001 * 109.46800 * 60.00445 * 1 2 3 33 33 H 1.08995 * 109.47402 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47144 * 239.99332 * 2 1 3 35 35 H 1.09001 * 109.46800 * 119.99555 * 2 1 3 36 36 H 0.97004 * 119.99638 * 179.97438 * 8 7 5 37 37 H 0.96994 * 119.99916 * 94.99845 * 13 3 2 38 38 H 1.08000 * 120.07330 * 359.97438 * 17 16 14 39 39 H 1.08004 * 119.92815 * 180.02562 * 18 17 16 40 40 H 1.08998 * 117.49846 * 214.98050 * 22 20 19 41 41 H 1.08998 * 117.49936 * 0.02562 * 22 20 19 42 42 H 1.09001 * 109.46809 * 300.00494 * 28 27 25 43 43 H 1.09001 * 109.46727 * 60.00170 * 28 27 25 44 44 H 1.09003 * 109.47293 * 180.02562 * 28 27 25 45 45 H 1.07993 * 119.92279 * 179.97438 * 29 19 18 46 46 H 1.08000 * 120.06785 * 179.97438 * 30 29 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1473 1.8888 0.6524 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8799 -1.3810 10 1 6.5989 1.5451 -0.1935 11 1 6.4963 -0.5192 -1.4624 12 1 6.4001 1.6154 -2.6090 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3668 15 8 -0.3410 2.6327 0.4319 16 6 0.0442 3.3259 2.6299 17 6 -1.2159 3.9135 2.7526 18 6 -1.5742 4.5297 3.9337 19 6 -0.6879 4.5655 4.9956 20 6 -1.0838 5.2457 6.2807 21 1 -2.1551 5.2950 6.4758 22 6 -0.1535 5.0791 7.4839 23 6 -0.2251 6.4213 6.7514 24 1 -0.7314 7.2438 7.2566 25 6 0.9522 6.8100 5.8947 26 8 1.1873 6.2002 4.8785 27 8 1.7388 7.8343 6.2601 28 6 2.8542 8.1531 5.3867 29 6 0.5628 3.9849 4.8805 30 6 0.9340 3.3665 3.7045 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 3.8294 -0.0613 -2.9497 37 1 2.2719 2.1232 1.9977 38 1 -1.9086 3.8866 1.9244 39 1 -2.5492 4.9844 4.0301 40 1 -0.6127 5.0192 8.4706 41 1 0.7451 4.4778 7.3459 42 1 3.5145 7.2891 5.3106 43 1 2.4781 8.4112 4.3967 44 1 3.4074 8.9978 5.7973 45 1 1.2501 4.0167 5.7129 46 1 1.9106 2.9141 3.6159 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192209123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:59 Heat of formation + Delta-G solvation = -82.577502 kcal Electronic energy + Delta-G solvation = -28300.417612 eV Core-core repulsion = 24348.546350 eV Total energy + Delta-G solvation = -3951.871263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.93136 -41.05081 -39.77870 -37.94079 -36.99350 -36.81709 -34.41281 -33.14208 -31.78103 -31.58589 -29.12111 -28.88135 -26.01049 -25.29314 -24.73010 -23.70450 -22.59095 -21.72711 -21.27716 -20.75428 -19.48755 -18.83889 -18.00766 -17.58946 -17.29584 -17.27838 -16.46776 -16.27959 -16.06681 -15.90551 -15.61235 -15.21730 -14.82955 -14.60609 -14.38084 -14.36469 -14.16982 -13.88949 -13.67063 -13.47078 -13.21728 -13.13892 -12.90882 -12.88938 -12.72484 -12.42667 -12.17835 -12.09931 -11.98182 -11.79145 -11.69656 -11.61281 -11.48846 -11.33470 -11.08033 -10.76290 -10.55757 -9.81172 -9.69362 -9.29210 -8.19021 -6.36913 -0.08125 0.53464 1.13579 1.41616 1.42213 1.54699 1.74414 2.01507 2.33446 2.61593 2.75791 3.09209 3.12329 3.47028 3.74936 3.81544 3.90692 3.92668 4.03319 4.08424 4.30458 4.30946 4.36425 4.45091 4.47704 4.53791 4.60796 4.70364 4.72306 4.83894 4.90884 4.92285 5.03086 5.10626 5.11643 5.21736 5.40169 5.41903 5.44877 5.49151 5.53908 5.58369 5.62074 5.75831 5.89980 6.02971 6.13014 6.70059 6.80415 6.93795 7.29287 7.51163 8.86874 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.013709 B = 0.003065 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.893623 B = 9134.478392 C =10594.739386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.119 4.119 3 C 0.278 3.722 4 H -0.003 1.003 5 C -0.551 4.551 6 H 0.068 0.932 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.973 3.027 10 H -0.262 1.262 11 H -0.275 1.275 12 H -0.283 1.283 13 N -0.700 5.700 14 C 0.538 3.462 15 O -0.588 6.588 16 C -0.148 4.148 17 C -0.086 4.086 18 C -0.116 4.116 19 C -0.032 4.032 20 C -0.089 4.089 21 H 0.161 0.839 22 C -0.125 4.125 23 C -0.158 4.158 24 H 0.170 0.830 25 C 0.471 3.529 26 O -0.515 6.515 27 O -0.362 6.362 28 C 0.032 3.968 29 C -0.070 4.070 30 C -0.100 4.100 31 H 0.039 0.961 32 H 0.026 0.974 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.266 0.734 37 H 0.399 0.601 38 H 0.119 0.881 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.098 0.902 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.494 13.532 25.716 29.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.158 4.158 3 C 0.175 3.825 4 H 0.015 0.985 5 C -0.589 4.589 6 H 0.086 0.914 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.797 3.203 10 H -0.186 1.186 11 H -0.201 1.201 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.327 3.673 15 O -0.471 6.471 16 C -0.151 4.151 17 C -0.105 4.105 18 C -0.134 4.134 19 C -0.033 4.033 20 C -0.107 4.107 21 H 0.179 0.821 22 C -0.162 4.162 23 C -0.177 4.177 24 H 0.187 0.813 25 C 0.315 3.685 26 O -0.404 6.404 27 O -0.279 6.279 28 C -0.061 4.061 29 C -0.088 4.088 30 C -0.119 4.119 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.235 0.765 38 H 0.137 0.863 39 H 0.172 0.828 40 H 0.170 0.830 41 H 0.117 0.883 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.873 13.235 24.543 28.719 hybrid contribution 1.520 -0.072 -1.074 1.863 sum -5.353 13.163 23.469 27.436 Atomic orbital electron populations 1.21674 0.97034 0.99225 1.00127 1.21775 0.93734 0.98932 1.01383 1.18421 0.93825 0.89276 0.81026 0.98500 1.21582 0.91265 1.39172 1.06880 0.91366 1.25792 1.03562 0.94211 0.94855 1.70059 1.37075 1.38212 1.09839 0.85286 0.78798 0.77999 0.78181 1.18636 1.20060 1.20856 1.46225 1.15244 1.55753 1.17658 1.18874 0.81995 0.78372 0.88040 1.90678 1.52616 1.61830 1.41973 1.19977 0.97376 1.03970 0.93741 1.21204 0.94656 0.96073 0.98562 1.21072 1.00989 0.99801 0.91545 1.19404 0.93365 0.95718 0.94775 1.21407 0.99950 0.97303 0.91997 0.82111 1.23455 1.01519 0.93269 0.97929 1.22037 0.95660 0.96148 1.03834 0.81291 1.23457 0.83226 0.77235 0.84588 1.90850 1.71428 1.51638 1.26477 1.86463 1.40033 1.48903 1.52466 1.23434 0.86278 1.02485 0.93942 1.20822 0.95954 0.95099 0.96876 1.21262 0.98575 0.99111 0.92973 0.94195 0.95510 0.93250 0.90661 0.94066 0.92476 0.76527 0.86338 0.82750 0.83028 0.88337 0.92404 0.92863 0.85179 0.85036 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.51 71.98 0.61 -5.35 16 2 C -0.12 -6.23 5.45 30.60 0.17 -6.07 16 3 C 0.28 15.26 2.24 44.24 0.10 15.36 16 4 H 0.00 -0.19 7.58 -2.39 -0.02 -0.21 16 5 C -0.55 -30.69 8.73 25.60 0.22 -30.47 16 6 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 7 C 0.02 0.89 5.29 84.65 0.45 1.34 16 8 N -0.91 -53.71 11.29 21.45 0.24 -53.47 16 9 Si 0.97 43.33 29.54 68.60 2.03 45.35 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 13 N -0.70 -32.68 4.97 -448.99 -2.23 -34.91 16 14 C 0.54 24.87 6.34 86.79 0.55 25.42 16 15 O -0.59 -31.24 13.48 -3.87 -0.05 -31.30 16 16 C -0.15 -5.49 5.87 -20.09 -0.12 -5.61 16 17 C -0.09 -2.81 9.60 22.53 0.22 -2.60 16 18 C -0.12 -2.80 9.72 22.23 0.22 -2.58 16 19 C -0.03 -0.69 4.39 -19.81 -0.09 -0.77 16 20 C -0.09 -1.01 6.03 -11.54 -0.07 -1.08 16 21 H 0.16 0.87 8.14 -2.38 -0.02 0.85 16 22 C -0.13 -0.93 9.58 30.62 0.29 -0.64 16 23 C -0.16 -1.68 6.30 -11.51 -0.07 -1.75 16 24 H 0.17 0.79 8.14 -2.39 -0.02 0.77 16 25 C 0.47 8.94 7.59 71.24 0.54 9.48 16 26 O -0.52 -13.62 11.43 21.96 0.25 -13.37 16 27 O -0.36 -6.34 10.57 -51.32 -0.54 -6.89 16 28 C 0.03 0.48 10.56 113.37 1.20 1.68 16 29 C -0.07 -1.73 6.13 22.23 0.14 -1.59 16 30 C -0.10 -3.13 9.54 22.53 0.21 -2.92 16 31 H 0.04 1.90 5.64 -2.39 -0.01 1.89 16 32 H 0.03 1.37 7.84 -2.39 -0.02 1.36 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.08 4.32 5.95 -2.39 -0.01 4.30 16 35 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.40 16.34 6.57 -92.71 -0.61 15.73 16 38 H 0.12 4.09 7.65 -2.91 -0.02 4.07 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.10 0.96 6.17 -2.39 -0.01 0.94 16 42 H 0.06 0.94 8.13 -2.39 -0.02 0.93 16 43 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 44 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.13 2.72 5.74 -2.91 -0.02 2.70 16 46 H 0.12 3.68 6.41 -2.91 -0.02 3.66 16 Total: -1.00 -77.53 373.26 4.66 -72.87 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.40 Total: 29.85 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 4.57 Total: -8.14 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -1.99 Total: -88.38 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -0.34 Total: -51.55 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -77.53 4.66 -72.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192209123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.705 kcal (2) G-P(sol) polarization free energy of solvation -77.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds