Wall clock time and date at job start Tue Mar 31 2020 16:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 H 1.09000 * 109.47361 * 54.99591 * 3 2 1 5 5 C 1.52999 * 109.47064 * 175.00112 * 3 2 1 6 6 N 1.46500 * 109.46912 * 175.00014 * 5 3 2 7 7 C 1.34784 * 120.00002 * 179.97438 * 6 5 3 8 8 O 1.21534 * 119.99928 * 359.97438 * 7 6 5 9 9 C 1.48015 * 120.00154 * 179.97438 * 7 6 5 10 10 C 1.39416 * 119.65354 * 180.02562 * 9 7 6 11 11 C 1.38376 * 119.13728 * 179.74779 * 10 9 7 12 12 C 1.39267 * 118.43235 * 0.46909 * 11 10 9 13 13 N 1.39982 * 120.38850 * 179.80446 * 12 11 10 14 14 C 1.35131 * 127.39417 * 184.72140 * 13 12 11 15 15 N 1.30717 * 107.26584 * 180.28463 * 14 13 12 16 16 N 1.28422 * 110.65337 * 359.55561 * 15 14 13 17 17 N 1.28954 * 110.21741 * 0.45699 * 16 15 14 18 18 C 1.39244 * 119.22046 * 359.52901 * 12 11 10 19 19 N 1.31395 * 120.80288 * 0.23021 * 18 12 11 20 20 N 1.46504 * 109.47069 * 294.99971 * 3 2 1 21 21 C 1.36931 * 120.00121 * 84.99521 * 20 3 2 22 22 H 1.07996 * 119.99904 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00026 * 179.97438 * 21 20 3 24 24 N 1.31621 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00016 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46691 * 60.00401 * 25 23 21 27 27 H 1.48502 * 109.47128 * 180.02562 * 25 23 21 28 28 H 1.48490 * 109.47139 * 300.00404 * 25 23 21 29 29 H 1.09003 * 109.46667 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47423 * 300.00108 * 1 2 3 31 31 H 1.09002 * 109.47478 * 60.00036 * 1 2 3 32 32 H 1.08993 * 109.47675 * 240.00171 * 2 1 3 33 33 H 1.09004 * 109.47459 * 119.99186 * 2 1 3 34 34 H 1.08999 * 109.47295 * 54.99889 * 5 3 2 35 35 H 1.09005 * 109.47281 * 294.99280 * 5 3 2 36 36 H 0.96994 * 120.00302 * 359.97438 * 6 5 3 37 37 H 1.08001 * 120.43151 * 359.97438 * 10 9 7 38 38 H 1.07993 * 120.78147 * 180.25855 * 11 10 9 39 39 H 1.08002 * 126.36454 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.59633 * 180.25323 * 18 12 11 41 41 H 0.97003 * 119.99937 * 265.00058 * 20 3 2 42 42 H 0.96997 * 120.00246 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 7 4.0629 2.8169 0.0059 7 6 5.3855 3.0633 0.0868 8 8 6.1649 2.1468 0.2595 9 6 5.8889 4.4499 -0.0348 10 6 7.2585 4.6963 0.0494 11 6 7.7179 5.9961 -0.0709 12 6 6.7864 7.0135 -0.2628 13 7 7.2055 8.3434 -0.3856 14 6 6.4269 9.4433 -0.4859 15 7 7.2236 10.4746 -0.5879 16 7 8.4524 10.1033 -0.5498 17 7 8.5271 8.8213 -0.4317 18 6 5.4337 6.6915 -0.3367 19 7 5.0313 5.4458 -0.2234 20 7 1.6523 2.0975 -1.2518 21 6 0.4155 2.6734 -1.3689 22 1 -0.2741 2.6451 -0.5383 23 6 0.0485 3.2944 -2.5548 24 7 0.8891 3.3294 -3.5670 25 14 -1.6385 4.0806 -2.7143 26 1 -1.7867 5.1461 -1.6906 27 1 -1.7833 4.6715 -4.0690 28 1 -2.6868 3.0489 -2.5102 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.9953 0.8312 -0.6659 35 1 3.8498 1.0379 1.0961 36 1 3.4409 3.5484 -0.1316 37 1 7.9523 3.8830 0.2029 38 1 8.7735 6.2167 -0.0140 39 1 5.3471 9.4656 -0.4863 40 1 4.7064 7.4752 -0.4895 41 1 2.2718 2.1232 -1.9978 42 1 0.6328 3.7636 -4.3956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269442348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:38 Heat of formation + Delta-G solvation = 137.953174 kcal Electronic energy + Delta-G solvation = -27145.124597 eV Core-core repulsion = 23163.861420 eV Total energy + Delta-G solvation = -3981.263176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.66759 -41.05536 -39.17207 -36.81183 -35.96595 -33.96208 -33.08190 -32.55212 -32.38735 -31.11039 -29.78778 -28.11116 -26.14937 -25.06812 -24.04409 -23.27363 -22.67611 -22.41160 -20.62069 -20.06088 -19.26548 -18.19745 -17.20723 -17.17268 -17.06536 -16.63413 -15.59231 -15.48775 -15.23021 -14.99422 -14.45955 -14.25160 -14.07178 -13.98233 -13.59972 -13.26683 -13.22065 -13.04491 -12.79588 -12.73491 -12.41711 -12.16435 -11.51362 -11.50831 -11.01233 -10.97528 -10.91593 -10.81629 -10.52210 -10.47686 -10.41989 -10.25027 -10.10789 -9.86188 -9.57869 -9.39965 -8.99658 -8.77946 -7.08131 -5.84975 -3.14442 -0.44356 0.59993 0.88398 1.19625 1.81029 2.54268 3.12504 3.36772 3.42391 3.43381 3.47807 3.50334 3.61693 3.82887 3.99484 4.29988 4.48118 4.50988 4.56171 4.84554 4.89188 5.07933 5.26066 5.31230 5.38260 5.44044 5.49844 5.65218 5.84913 5.89025 5.90573 5.99348 6.06817 6.36333 6.45307 6.51250 6.54910 6.73646 6.95876 7.13648 7.20376 7.62187 7.76009 7.91439 8.28297 8.32113 9.43937 9.97998 10.33816 11.36672 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.002966 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.386548 B = 9437.617245 C =11452.662842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.111 3.889 6 N -0.684 5.684 7 C 0.563 3.437 8 O -0.542 6.542 9 C 0.099 3.901 10 C -0.092 4.092 11 C -0.063 4.063 12 C 0.089 3.911 13 N -0.325 5.325 14 C 0.234 3.766 15 N -0.328 5.328 16 N -0.031 5.031 17 N -0.075 5.075 18 C 0.114 3.886 19 N -0.419 5.419 20 N -0.721 5.721 21 C -0.238 4.238 22 H 0.072 0.928 23 C -0.009 4.009 24 N -0.929 5.929 25 Si 0.903 3.097 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.422 0.578 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.245 0.755 40 H 0.174 0.826 41 H 0.385 0.615 42 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.232 5.260 8.822 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.013 4.013 6 N -0.335 5.335 7 C 0.346 3.654 8 O -0.420 6.420 9 C -0.040 4.040 10 C -0.113 4.113 11 C -0.091 4.091 12 C -0.007 4.007 13 N -0.116 5.116 14 C -0.063 4.063 15 N -0.176 5.176 16 N -0.027 5.027 17 N -0.060 5.060 18 C -0.050 4.050 19 N -0.129 5.129 20 N -0.363 5.363 21 C -0.369 4.369 22 H 0.090 0.910 23 C -0.205 4.205 24 N -0.577 5.577 25 Si 0.734 3.266 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.051 0.949 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.261 0.739 37 H 0.182 0.818 38 H 0.177 0.823 39 H 0.261 0.739 40 H 0.191 0.809 41 H 0.219 0.781 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.959 5.155 8.828 14.988 hybrid contribution -1.043 0.423 -0.500 1.231 sum 9.917 5.579 8.329 14.101 Atomic orbital electron populations 1.21770 0.95664 0.99670 1.03294 1.22071 0.97041 0.98281 1.00060 1.20571 0.89616 0.92966 0.91611 0.92712 1.21819 0.96048 0.82002 1.01473 1.45897 1.06693 1.11585 1.69288 1.17668 0.83341 0.86176 0.78243 1.90787 1.56331 1.44180 1.50671 1.21587 0.90729 0.94063 0.97662 1.22138 0.96035 0.97077 0.96053 1.21440 1.00791 0.90816 0.96028 1.18933 0.95562 0.80388 1.05806 1.48947 1.06415 1.06891 1.49357 1.27643 1.01822 0.81122 0.95675 1.74531 0.96024 1.25750 1.21268 1.78109 1.12143 1.03103 1.09303 1.82698 0.96363 1.05934 1.21047 1.22727 0.90791 0.94763 0.96697 1.67818 1.37525 0.98849 1.08727 1.42437 1.16819 1.65843 1.11188 1.19135 0.91884 1.27880 0.97975 0.90966 1.24716 0.97970 1.01482 0.96376 1.69649 1.35214 1.48821 1.03977 0.86349 0.84295 0.79259 0.76735 1.21278 1.21822 1.21310 0.94862 0.94103 0.89618 0.92475 0.93811 0.91346 0.91380 0.73897 0.81780 0.82306 0.73910 0.80880 0.78096 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.18 37.15 0.34 -2.15 16 2 C -0.13 -2.17 5.61 -26.73 -0.15 -2.32 16 3 C 0.16 2.83 2.59 -67.93 -0.18 2.65 16 4 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 5 C 0.11 1.74 5.23 -4.04 -0.02 1.71 16 6 N -0.68 -10.77 5.38 -61.19 -0.33 -11.10 16 7 C 0.56 8.57 7.81 -12.25 -0.10 8.47 16 8 O -0.54 -9.25 16.31 5.34 0.09 -9.16 16 9 C 0.10 1.24 6.75 -83.01 -0.56 0.68 16 10 C -0.09 -0.91 9.62 -39.09 -0.38 -1.29 16 11 C -0.06 -0.54 9.81 -39.15 -0.38 -0.93 16 12 C 0.09 0.78 6.73 -83.38 -0.56 0.22 16 13 N -0.33 -2.95 3.85 -11.59 -0.04 -2.99 16 14 C 0.23 1.74 12.16 -90.11 -1.10 0.64 16 15 N -0.33 -3.51 12.15 29.65 0.36 -3.15 16 16 N -0.03 -0.39 13.39 60.35 0.81 0.42 16 17 N -0.08 -0.85 13.41 60.35 0.81 -0.04 16 18 C 0.11 1.02 10.65 -17.36 -0.18 0.83 16 19 N -0.42 -5.08 9.53 -9.66 -0.09 -5.17 16 20 N -0.72 -15.69 4.51 -53.42 -0.24 -15.93 16 21 C -0.24 -5.80 7.75 -15.06 -0.12 -5.92 16 22 H 0.07 1.72 7.32 -52.49 -0.38 1.34 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 24 N -0.93 -25.95 13.06 55.49 0.72 -25.23 16 25 Si 0.90 20.85 29.55 -169.99 -5.02 15.82 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 1.74 5.99 -51.93 -0.31 1.43 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.42 7.04 7.46 -40.82 -0.30 6.73 16 37 H 0.16 1.46 7.63 -52.49 -0.40 1.06 16 38 H 0.16 1.12 7.85 -52.49 -0.41 0.71 16 39 H 0.25 0.52 7.23 -52.49 -0.38 0.14 16 40 H 0.17 0.93 6.92 -52.49 -0.36 0.57 16 41 H 0.38 9.25 7.80 -40.82 -0.32 8.93 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -31.22 365.29 -5.88 -37.10 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -4.96 Total: 11.65 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: -3.48 Total: 2.27 kcal Atomic # 7 Polarization: -65.18 SS G_CDS: 2.00 Total: -63.19 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.22 -5.88 -37.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269442348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.054 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds