Wall clock time and date at job start Tue Mar 31 2020 16:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.46959 * 2 1 4 4 H 1.09000 * 109.47361 * 54.99591 * 3 2 1 5 5 C 1.52999 * 109.47064 * 175.00112 * 3 2 1 6 6 N 1.46500 * 109.46912 * 175.00014 * 5 3 2 7 7 C 1.34784 * 120.00002 * 179.97438 * 6 5 3 8 8 O 1.21534 * 119.99928 * 359.97438 * 7 6 5 9 9 C 1.48015 * 120.00154 * 179.97438 * 7 6 5 10 10 C 1.39416 * 119.65354 * 180.02562 * 9 7 6 11 11 C 1.38376 * 119.13728 * 179.74779 * 10 9 7 12 12 C 1.39267 * 118.43235 * 0.46909 * 11 10 9 13 13 N 1.39982 * 120.38850 * 179.80446 * 12 11 10 14 14 C 1.35131 * 127.39417 * 184.72140 * 13 12 11 15 15 N 1.30717 * 107.26584 * 180.28463 * 14 13 12 16 16 N 1.28422 * 110.65337 * 359.55561 * 15 14 13 17 17 N 1.28954 * 110.21741 * 0.45699 * 16 15 14 18 18 C 1.39244 * 119.22046 * 359.52901 * 12 11 10 19 19 N 1.31395 * 120.80288 * 0.23021 * 18 12 11 20 20 N 1.46504 * 109.47069 * 294.99971 * 3 2 1 21 21 C 1.36931 * 120.00121 * 84.99521 * 20 3 2 22 22 H 1.07996 * 119.99904 * 0.02562 * 21 20 3 23 23 C 1.38811 * 120.00026 * 179.97438 * 21 20 3 24 24 N 1.31621 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00016 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46691 * 60.00401 * 25 23 21 27 27 H 1.48502 * 109.47128 * 180.02562 * 25 23 21 28 28 H 1.48490 * 109.47139 * 300.00404 * 25 23 21 29 29 H 1.09003 * 109.46667 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47423 * 300.00108 * 1 2 3 31 31 H 1.09002 * 109.47478 * 60.00036 * 1 2 3 32 32 H 1.08993 * 109.47675 * 240.00171 * 2 1 3 33 33 H 1.09004 * 109.47459 * 119.99186 * 2 1 3 34 34 H 1.08999 * 109.47295 * 54.99889 * 5 3 2 35 35 H 1.09005 * 109.47281 * 294.99280 * 5 3 2 36 36 H 0.96994 * 120.00302 * 359.97438 * 6 5 3 37 37 H 1.08001 * 120.43151 * 359.97438 * 10 9 7 38 38 H 1.07993 * 120.78147 * 180.25855 * 11 10 9 39 39 H 1.08002 * 126.36454 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.59633 * 180.25323 * 18 12 11 41 41 H 0.97003 * 119.99937 * 265.00058 * 20 3 2 42 42 H 0.96997 * 120.00246 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5647 1.4444 0.1257 6 7 4.0629 2.8169 0.0059 7 6 5.3855 3.0633 0.0868 8 8 6.1649 2.1468 0.2595 9 6 5.8889 4.4499 -0.0348 10 6 7.2585 4.6963 0.0494 11 6 7.7179 5.9961 -0.0709 12 6 6.7864 7.0135 -0.2628 13 7 7.2055 8.3434 -0.3856 14 6 6.4269 9.4433 -0.4859 15 7 7.2236 10.4746 -0.5879 16 7 8.4524 10.1033 -0.5498 17 7 8.5271 8.8213 -0.4317 18 6 5.4337 6.6915 -0.3367 19 7 5.0313 5.4458 -0.2234 20 7 1.6523 2.0975 -1.2518 21 6 0.4155 2.6734 -1.3689 22 1 -0.2741 2.6451 -0.5383 23 6 0.0485 3.2944 -2.5548 24 7 0.8891 3.3294 -3.5670 25 14 -1.6385 4.0806 -2.7143 26 1 -1.7867 5.1461 -1.6906 27 1 -1.7833 4.6715 -4.0690 28 1 -2.6868 3.0489 -2.5102 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.9953 0.8312 -0.6659 35 1 3.8498 1.0379 1.0961 36 1 3.4409 3.5484 -0.1316 37 1 7.9523 3.8830 0.2029 38 1 8.7735 6.2167 -0.0140 39 1 5.3471 9.4656 -0.4863 40 1 4.7064 7.4752 -0.4895 41 1 2.2718 2.1232 -1.9978 42 1 0.6328 3.7636 -4.3956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269442348.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:37 Heat of formation + Delta-G solvation = 116.167771 kcal Electronic energy + Delta-G solvation = -27146.069283 eV Core-core repulsion = 23163.861420 eV Total energy + Delta-G solvation = -3982.207862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.41100 -41.92253 -40.29732 -38.26059 -36.76803 -35.32164 -34.15676 -33.82834 -33.28468 -31.96881 -31.42774 -29.49147 -27.07734 -25.80695 -25.56319 -24.49925 -23.57303 -23.41201 -21.76974 -21.43060 -19.98767 -19.47567 -18.81860 -18.04851 -17.83417 -17.27859 -16.99908 -16.65235 -16.38246 -16.05910 -15.79218 -15.42117 -15.10435 -14.93996 -14.79470 -14.61249 -14.36717 -14.12427 -13.98126 -13.75741 -13.54796 -13.21163 -12.94472 -12.75285 -12.70887 -12.35241 -12.25765 -12.11087 -11.86593 -11.72977 -11.61199 -11.50748 -11.28625 -11.17487 -10.91043 -10.79337 -10.25951 -9.96109 -8.92689 -7.82524 -5.09310 -1.21624 -0.11915 0.10082 0.49592 1.07937 1.54110 1.55360 1.56765 1.60419 2.05603 2.57350 2.63995 2.79677 2.91529 3.11790 3.37570 3.50792 3.61018 3.63104 3.78131 3.92974 3.98613 4.11543 4.13873 4.41111 4.41908 4.50980 4.53477 4.59707 4.66480 4.78411 4.90655 4.95175 5.13041 5.15593 5.23850 5.30578 5.44209 5.59191 5.65604 5.75825 6.27525 6.37003 6.59698 7.08054 7.16153 7.45427 8.16920 8.41733 9.40030 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.011785 B = 0.002966 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.386548 B = 9437.617245 C =11452.662842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.164 3.836 4 H 0.059 0.941 5 C 0.118 3.882 6 N -0.689 5.689 7 C 0.561 3.439 8 O -0.566 6.566 9 C 0.075 3.925 10 C -0.085 4.085 11 C -0.058 4.058 12 C 0.098 3.902 13 N -0.328 5.328 14 C 0.253 3.747 15 N -0.354 5.354 16 N -0.053 5.053 17 N -0.092 5.092 18 C 0.120 3.880 19 N -0.444 5.444 20 N -0.727 5.727 21 C -0.215 4.215 22 H 0.079 0.921 23 C -0.070 4.070 24 N -0.967 5.967 25 Si 0.957 3.043 26 H -0.277 1.277 27 H -0.305 1.305 28 H -0.285 1.285 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.418 0.582 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.295 0.705 40 H 0.211 0.789 41 H 0.372 0.628 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.763 5.737 10.329 15.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.077 0.923 5 C -0.006 4.006 6 N -0.339 5.339 7 C 0.346 3.654 8 O -0.446 6.446 9 C -0.062 4.062 10 C -0.106 4.106 11 C -0.085 4.085 12 C 0.002 3.998 13 N -0.119 5.119 14 C -0.042 4.042 15 N -0.202 5.202 16 N -0.048 5.048 17 N -0.078 5.078 18 C -0.045 4.045 19 N -0.154 5.154 20 N -0.367 5.367 21 C -0.347 4.347 22 H 0.097 0.903 23 C -0.262 4.262 24 N -0.618 5.618 25 Si 0.788 3.212 26 H -0.203 1.203 27 H -0.232 1.232 28 H -0.212 1.212 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.256 0.744 37 H 0.189 0.811 38 H 0.192 0.808 39 H 0.310 0.690 40 H 0.227 0.773 41 H 0.204 0.796 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.487 5.608 10.394 15.795 hybrid contribution -0.873 0.274 -0.878 1.268 sum 9.614 5.882 9.516 14.751 Atomic orbital electron populations 1.21702 0.96070 1.00532 1.01798 1.21989 0.96562 0.97288 1.01150 1.20726 0.90832 0.93354 0.89580 0.92297 1.21719 0.94581 0.82239 1.02070 1.45903 1.07029 1.11270 1.69673 1.18045 0.82798 0.87299 0.77234 1.90758 1.56671 1.45371 1.51801 1.21268 0.91709 0.92977 1.00294 1.22162 0.95041 0.97898 0.95482 1.21606 1.01641 0.90214 0.95056 1.18973 0.95663 0.80284 1.04841 1.48944 1.06124 1.07220 1.49583 1.28630 1.03327 0.79604 0.92671 1.74482 0.95993 1.27255 1.22509 1.78105 1.13177 1.03532 1.10026 1.82654 0.97662 1.05772 1.21666 1.23248 0.91526 0.94384 0.95293 1.67759 1.38083 0.99863 1.09716 1.42551 1.15786 1.66088 1.12295 1.19429 0.92436 1.25370 0.97432 0.90307 1.25322 1.00749 1.03472 0.96665 1.69798 1.36775 1.50962 1.04257 0.85457 0.81192 0.78569 0.75993 1.20300 1.23192 1.21210 0.92965 0.93169 0.93321 0.93540 0.90501 0.92456 0.89440 0.74426 0.81111 0.80795 0.68976 0.77258 0.79617 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.62 9.18 71.98 0.66 -3.96 16 2 C -0.13 -3.95 5.61 30.59 0.17 -3.78 16 3 C 0.16 5.49 2.59 44.99 0.12 5.61 16 4 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 5 C 0.12 3.60 5.23 86.38 0.45 4.05 16 6 N -0.69 -21.52 5.38 -465.79 -2.50 -24.02 16 7 C 0.56 17.02 7.81 86.84 0.68 17.70 16 8 O -0.57 -19.29 16.31 -3.82 -0.06 -19.35 16 9 C 0.08 1.84 6.75 41.88 0.28 2.12 16 10 C -0.08 -1.59 9.62 22.59 0.22 -1.38 16 11 C -0.06 -0.89 9.81 22.55 0.22 -0.67 16 12 C 0.10 1.48 6.73 38.33 0.26 1.74 16 13 N -0.33 -5.14 3.85 -190.58 -0.73 -5.87 16 14 C 0.25 2.98 12.16 180.17 2.19 5.17 16 15 N -0.35 -6.97 12.15 -60.10 -0.73 -7.70 16 16 N -0.05 -1.25 13.39 37.02 0.50 -0.76 16 17 N -0.09 -1.95 13.41 37.02 0.50 -1.46 16 18 C 0.12 1.82 10.65 85.00 0.91 2.72 16 19 N -0.44 -10.17 9.53 -184.48 -1.76 -11.92 16 20 N -0.73 -31.56 4.51 -322.93 -1.46 -33.02 16 21 C -0.21 -10.40 7.75 84.03 0.65 -9.75 16 22 H 0.08 3.67 7.32 -2.91 -0.02 3.65 16 23 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 24 N -0.97 -55.06 13.06 21.65 0.28 -54.78 16 25 Si 0.96 42.99 29.55 68.60 2.03 45.02 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 29 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.05 1.93 5.99 -2.39 -0.01 1.91 16 32 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.09 2.33 8.14 -2.38 -0.02 2.31 16 36 H 0.42 13.87 7.46 -92.71 -0.69 13.18 16 37 H 0.17 2.91 7.63 -2.91 -0.02 2.89 16 38 H 0.17 2.14 7.85 -2.91 -0.02 2.12 16 39 H 0.30 -0.18 7.23 -2.91 -0.02 -0.21 16 40 H 0.21 1.39 6.92 -2.91 -0.02 1.37 16 41 H 0.37 18.16 7.80 -92.71 -0.72 17.44 16 42 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -69.16 365.29 3.01 -66.15 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.32 Total: 31.33 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 7.27 Total: 16.39 kcal Atomic # 7 Polarization: -133.63 SS G_CDS: -5.91 Total: -139.53 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.06 Total: -19.35 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -69.16 3.01 -66.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269442348.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.314 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds