Wall clock time and date at job start Tue Mar 31 2020 16:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47139 * 2 1 4 4 H 1.09004 * 109.46729 * 304.99546 * 3 2 1 5 5 C 1.52999 * 109.46893 * 184.99974 * 3 2 1 6 6 N 1.46500 * 109.46912 * 184.99949 * 5 3 2 7 7 C 1.34784 * 120.00002 * 179.97438 * 6 5 3 8 8 O 1.21534 * 119.99928 * 359.97438 * 7 6 5 9 9 C 1.48015 * 120.00154 * 179.97438 * 7 6 5 10 10 C 1.39416 * 119.65354 * 180.02562 * 9 7 6 11 11 C 1.38376 * 119.13728 * 179.74779 * 10 9 7 12 12 C 1.39267 * 118.43235 * 0.46909 * 11 10 9 13 13 N 1.39982 * 120.38850 * 179.80446 * 12 11 10 14 14 C 1.35131 * 127.39417 * 184.72140 * 13 12 11 15 15 N 1.30717 * 107.26584 * 180.28463 * 14 13 12 16 16 N 1.28422 * 110.65337 * 359.55561 * 15 14 13 17 17 N 1.28954 * 110.21741 * 0.45699 * 16 15 14 18 18 C 1.39244 * 119.22046 * 359.52901 * 12 11 10 19 19 N 1.31395 * 120.80288 * 0.23021 * 18 12 11 20 20 N 1.46496 * 109.47367 * 64.99718 * 3 2 1 21 21 C 1.36942 * 120.00247 * 274.99942 * 20 3 2 22 22 H 1.08006 * 119.99500 * 359.97438 * 21 20 3 23 23 C 1.38811 * 120.00310 * 180.02562 * 21 20 3 24 24 N 1.31622 * 119.99663 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00034 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47149 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46979 * 119.99987 * 25 23 21 28 28 H 1.48492 * 109.47149 * 240.00062 * 25 23 21 29 29 H 1.09002 * 109.47539 * 300.00325 * 1 2 3 30 30 H 1.09007 * 109.46996 * 60.00175 * 1 2 3 31 31 H 1.09003 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47079 * 239.99633 * 2 1 3 33 33 H 1.09005 * 109.46483 * 119.99770 * 2 1 3 34 34 H 1.08999 * 109.47295 * 64.99824 * 5 3 2 35 35 H 1.09005 * 109.47281 * 304.99215 * 5 3 2 36 36 H 0.96994 * 120.00302 * 359.97438 * 6 5 3 37 37 H 1.08001 * 120.43151 * 359.97438 * 10 9 7 38 38 H 1.07993 * 120.78147 * 180.25855 * 11 10 9 39 39 H 1.08002 * 126.36454 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.59633 * 180.25323 * 18 12 11 41 41 H 0.97001 * 119.99956 * 95.00080 * 20 3 2 42 42 H 0.97000 * 119.99146 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5648 1.4442 -0.1257 6 7 4.0630 2.8167 -0.0060 7 6 5.3858 3.0628 -0.0858 8 8 6.1652 2.1461 -0.2567 9 6 5.8892 4.4495 0.0346 10 6 7.2588 4.6959 -0.0496 11 6 7.7173 5.9970 0.0592 12 6 6.7865 7.0134 0.2595 13 7 7.2055 8.3437 0.3794 14 6 6.4420 9.4223 0.6618 15 7 7.2312 10.4643 0.6719 16 7 8.4426 10.1175 0.4243 17 7 8.5111 8.8443 0.2311 18 6 5.4338 6.6916 0.3335 19 7 5.0315 5.4458 0.2212 20 7 1.6524 2.0975 1.2517 21 6 0.4156 2.6736 1.3687 22 1 -0.2740 2.6453 0.5379 23 6 0.0485 3.2947 2.5546 24 7 0.8895 3.3304 3.5664 25 14 -1.6384 4.0811 2.7138 26 1 -2.3881 3.9058 1.4439 27 1 -2.3842 3.4324 3.8220 28 1 -1.4840 5.5295 3.0022 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.8499 1.0375 -1.0960 35 1 3.9954 0.8311 0.6660 36 1 3.4410 3.5483 0.1308 37 1 7.9526 3.8823 -0.2014 38 1 8.7722 6.2185 -0.0064 39 1 5.3770 9.4237 0.8413 40 1 4.7065 7.4755 0.4847 41 1 2.2719 2.1232 1.9977 42 1 0.6328 3.7642 4.3952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269442349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:41 Heat of formation + Delta-G solvation = 137.736147 kcal Electronic energy + Delta-G solvation = -27145.507673 eV Core-core repulsion = 23164.235085 eV Total energy + Delta-G solvation = -3981.272587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.66769 -41.05596 -39.17328 -36.81526 -35.96619 -33.96430 -33.08226 -32.55312 -32.39022 -31.11097 -29.79100 -28.11361 -26.15012 -25.06827 -24.04763 -23.27726 -22.67598 -22.41425 -20.62225 -20.06391 -19.26531 -18.19885 -17.20602 -17.17854 -17.06611 -16.63172 -15.59560 -15.48752 -15.23428 -14.99557 -14.45983 -14.25070 -14.07697 -13.97278 -13.59957 -13.28412 -13.22190 -13.04362 -12.79616 -12.74056 -12.41670 -12.16647 -11.51525 -11.50777 -11.02609 -10.97492 -10.93967 -10.81802 -10.52121 -10.47415 -10.41859 -10.24317 -10.06853 -9.86182 -9.58872 -9.40005 -9.01007 -8.78108 -7.08339 -5.85766 -3.15054 -0.44384 0.59952 0.88425 1.19523 1.81027 2.54175 3.12453 3.35708 3.42606 3.44403 3.47515 3.50737 3.61663 3.82911 3.99511 4.30010 4.47946 4.50698 4.56109 4.84514 4.89216 5.07886 5.26058 5.30979 5.37971 5.43936 5.49581 5.65181 5.84630 5.88827 5.90308 5.99287 6.06613 6.36005 6.45137 6.51003 6.54630 6.73458 6.95578 7.13559 7.19849 7.62829 7.75858 7.91425 8.28107 8.31491 9.43428 9.97477 10.33254 11.36049 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.011798 B = 0.002967 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.679027 B = 9434.508353 C =11462.151804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.163 3.837 4 H 0.055 0.945 5 C 0.111 3.889 6 N -0.684 5.684 7 C 0.563 3.437 8 O -0.542 6.542 9 C 0.099 3.901 10 C -0.092 4.092 11 C -0.063 4.063 12 C 0.089 3.911 13 N -0.326 5.326 14 C 0.234 3.766 15 N -0.328 5.328 16 N -0.031 5.031 17 N -0.075 5.075 18 C 0.114 3.886 19 N -0.419 5.419 20 N -0.721 5.721 21 C -0.236 4.236 22 H 0.074 0.926 23 C -0.010 4.010 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.280 1.280 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.032 0.968 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.422 0.578 37 H 0.165 0.835 38 H 0.159 0.841 39 H 0.245 0.755 40 H 0.174 0.826 41 H 0.385 0.615 42 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.276 5.166 -8.343 14.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.013 4.013 6 N -0.335 5.335 7 C 0.346 3.654 8 O -0.420 6.420 9 C -0.040 4.040 10 C -0.113 4.113 11 C -0.091 4.091 12 C -0.007 4.007 13 N -0.116 5.116 14 C -0.062 4.062 15 N -0.176 5.176 16 N -0.027 5.027 17 N -0.061 5.061 18 C -0.050 4.050 19 N -0.129 5.129 20 N -0.363 5.363 21 C -0.367 4.367 22 H 0.091 0.909 23 C -0.206 4.206 24 N -0.576 5.576 25 Si 0.733 3.267 26 H -0.205 1.205 27 H -0.220 1.220 28 H -0.219 1.219 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.261 0.739 37 H 0.182 0.818 38 H 0.177 0.823 39 H 0.261 0.739 40 H 0.191 0.809 41 H 0.219 0.781 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.985 5.079 -8.552 14.819 hybrid contribution -1.021 0.416 0.623 1.267 sum 9.963 5.495 -7.929 13.868 Atomic orbital electron populations 1.21771 0.95665 0.99670 1.03292 1.22070 0.97042 0.98273 1.00068 1.20569 0.89620 0.92970 0.91609 0.92706 1.21819 0.96042 0.82005 1.01476 1.45896 1.06685 1.11578 1.69308 1.17668 0.83341 0.86178 0.78237 1.90787 1.56329 1.44165 1.50684 1.21586 0.90727 0.94068 0.97666 1.22138 0.96041 0.97063 0.96053 1.21440 1.00787 0.90776 0.96080 1.18933 0.95530 0.80318 1.05897 1.48948 1.07630 1.07396 1.47643 1.27651 1.01724 0.81447 0.95415 1.74533 0.96626 1.25325 1.21088 1.78109 1.12155 1.03725 1.08671 1.82696 0.96891 1.05474 1.21007 1.22727 0.90740 0.94777 0.96739 1.67817 1.37528 0.98850 1.08724 1.42454 1.16846 1.65820 1.11196 1.19231 0.91846 1.27632 0.97984 0.90851 1.24719 0.97993 1.01521 0.96398 1.69675 1.35048 1.48939 1.03966 0.86203 0.84143 0.78883 0.77454 1.20550 1.21988 1.21940 0.89637 0.94093 0.94852 0.93803 0.92472 0.91380 0.91342 0.73900 0.81780 0.82306 0.73897 0.80880 0.78101 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.18 37.16 0.34 -2.15 16 2 C -0.13 -2.16 5.61 -26.73 -0.15 -2.31 16 3 C 0.16 2.82 2.59 -67.94 -0.18 2.65 16 4 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 5 C 0.11 1.73 5.23 -4.04 -0.02 1.71 16 6 N -0.68 -10.76 5.38 -61.19 -0.33 -11.09 16 7 C 0.56 8.56 7.81 -12.25 -0.10 8.47 16 8 O -0.54 -9.24 16.31 5.34 0.09 -9.15 16 9 C 0.10 1.24 6.75 -83.01 -0.56 0.68 16 10 C -0.09 -0.91 9.62 -39.09 -0.38 -1.29 16 11 C -0.06 -0.54 9.81 -39.15 -0.38 -0.93 16 12 C 0.09 0.78 6.73 -83.38 -0.56 0.22 16 13 N -0.33 -2.95 3.85 -11.59 -0.04 -2.99 16 14 C 0.23 1.75 12.16 -90.11 -1.10 0.66 16 15 N -0.33 -3.52 12.15 29.65 0.36 -3.16 16 16 N -0.03 -0.38 13.39 60.35 0.81 0.42 16 17 N -0.08 -0.85 13.41 60.35 0.81 -0.04 16 18 C 0.11 1.02 10.65 -17.36 -0.18 0.83 16 19 N -0.42 -5.07 9.53 -9.66 -0.09 -5.16 16 20 N -0.72 -15.66 4.51 -53.43 -0.24 -15.90 16 21 C -0.24 -5.75 7.75 -15.06 -0.12 -5.87 16 22 H 0.07 1.76 7.33 -52.48 -0.38 1.37 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 24 N -0.93 -25.89 13.06 55.49 0.72 -25.17 16 25 Si 0.90 20.83 29.55 -169.99 -5.02 15.80 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.08 1.73 5.99 -51.93 -0.31 1.41 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.42 7.03 7.46 -40.82 -0.30 6.72 16 37 H 0.16 1.46 7.63 -52.49 -0.40 1.06 16 38 H 0.16 1.12 7.85 -52.49 -0.41 0.71 16 39 H 0.25 0.55 7.23 -52.49 -0.38 0.17 16 40 H 0.17 0.93 6.92 -52.49 -0.36 0.57 16 41 H 0.38 9.23 7.80 -40.82 -0.32 8.91 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 365.29 15.07 5.50 5.50 Total: -1.00 -31.20 365.29 -5.88 -37.08 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -4.96 Total: 11.55 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -3.48 Total: 2.31 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: 2.00 Total: -63.09 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.20 -5.88 -37.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269442349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.817 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds