Wall clock time and date at job start Tue Mar 31 2020 16:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47139 * 2 1 4 4 H 1.09004 * 109.46729 * 304.99546 * 3 2 1 5 5 C 1.52999 * 109.46893 * 184.99974 * 3 2 1 6 6 N 1.46500 * 109.46912 * 184.99949 * 5 3 2 7 7 C 1.34784 * 120.00002 * 179.97438 * 6 5 3 8 8 O 1.21534 * 119.99928 * 359.97438 * 7 6 5 9 9 C 1.48015 * 120.00154 * 179.97438 * 7 6 5 10 10 C 1.39416 * 119.65354 * 180.02562 * 9 7 6 11 11 C 1.38376 * 119.13728 * 179.74779 * 10 9 7 12 12 C 1.39267 * 118.43235 * 0.46909 * 11 10 9 13 13 N 1.39982 * 120.38850 * 179.80446 * 12 11 10 14 14 C 1.35131 * 127.39417 * 184.72140 * 13 12 11 15 15 N 1.30717 * 107.26584 * 180.28463 * 14 13 12 16 16 N 1.28422 * 110.65337 * 359.55561 * 15 14 13 17 17 N 1.28954 * 110.21741 * 0.45699 * 16 15 14 18 18 C 1.39244 * 119.22046 * 359.52901 * 12 11 10 19 19 N 1.31395 * 120.80288 * 0.23021 * 18 12 11 20 20 N 1.46496 * 109.47367 * 64.99718 * 3 2 1 21 21 C 1.36942 * 120.00247 * 274.99942 * 20 3 2 22 22 H 1.08006 * 119.99500 * 359.97438 * 21 20 3 23 23 C 1.38811 * 120.00310 * 180.02562 * 21 20 3 24 24 N 1.31622 * 119.99663 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00034 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47149 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46979 * 119.99987 * 25 23 21 28 28 H 1.48492 * 109.47149 * 240.00062 * 25 23 21 29 29 H 1.09002 * 109.47539 * 300.00325 * 1 2 3 30 30 H 1.09007 * 109.46996 * 60.00175 * 1 2 3 31 31 H 1.09003 * 109.47048 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47079 * 239.99633 * 2 1 3 33 33 H 1.09005 * 109.46483 * 119.99770 * 2 1 3 34 34 H 1.08999 * 109.47295 * 64.99824 * 5 3 2 35 35 H 1.09005 * 109.47281 * 304.99215 * 5 3 2 36 36 H 0.96994 * 120.00302 * 359.97438 * 6 5 3 37 37 H 1.08001 * 120.43151 * 359.97438 * 10 9 7 38 38 H 1.07993 * 120.78147 * 180.25855 * 11 10 9 39 39 H 1.08002 * 126.36454 * 0.02562 * 14 13 12 40 40 H 1.08001 * 119.59633 * 180.25323 * 18 12 11 41 41 H 0.97001 * 119.99956 * 95.00080 * 20 3 2 42 42 H 0.97000 * 119.99146 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 3.5648 1.4442 -0.1257 6 7 4.0630 2.8167 -0.0060 7 6 5.3858 3.0628 -0.0858 8 8 6.1652 2.1461 -0.2567 9 6 5.8892 4.4495 0.0346 10 6 7.2588 4.6959 -0.0496 11 6 7.7173 5.9970 0.0592 12 6 6.7865 7.0134 0.2595 13 7 7.2055 8.3437 0.3794 14 6 6.4420 9.4223 0.6618 15 7 7.2312 10.4643 0.6719 16 7 8.4426 10.1175 0.4243 17 7 8.5111 8.8443 0.2311 18 6 5.4338 6.6916 0.3335 19 7 5.0315 5.4458 0.2212 20 7 1.6524 2.0975 1.2517 21 6 0.4156 2.6736 1.3687 22 1 -0.2740 2.6453 0.5379 23 6 0.0485 3.2947 2.5546 24 7 0.8895 3.3304 3.5664 25 14 -1.6384 4.0811 2.7138 26 1 -2.3881 3.9058 1.4439 27 1 -2.3842 3.4324 3.8220 28 1 -1.4840 5.5295 3.0022 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 3.8499 1.0375 -1.0960 35 1 3.9954 0.8311 0.6660 36 1 3.4410 3.5483 0.1308 37 1 7.9526 3.8823 -0.2014 38 1 8.7722 6.2185 -0.0064 39 1 5.3770 9.4237 0.8413 40 1 4.7065 7.4755 0.4847 41 1 2.2719 2.1232 1.9977 42 1 0.6328 3.7642 4.3952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269442349.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:40 Heat of formation + Delta-G solvation = 115.995669 kcal Electronic energy + Delta-G solvation = -27146.450410 eV Core-core repulsion = 23164.235085 eV Total energy + Delta-G solvation = -3982.215325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.41250 -41.92306 -40.29792 -38.26269 -36.76886 -35.32305 -34.15771 -33.82900 -33.28557 -31.96937 -31.42838 -29.49229 -27.07838 -25.80795 -25.56799 -24.50050 -23.57314 -23.41316 -21.77083 -21.43147 -19.98853 -19.47727 -18.82145 -18.04941 -17.83517 -17.27916 -17.00390 -16.65054 -16.38446 -16.05990 -15.78283 -15.42574 -15.10614 -14.94783 -14.79683 -14.61044 -14.37113 -14.11308 -13.99201 -13.76099 -13.54894 -13.21101 -12.95555 -12.77904 -12.74388 -12.33316 -12.25906 -12.04744 -11.84683 -11.73068 -11.61040 -11.50818 -11.29060 -11.17561 -10.92256 -10.80568 -10.26016 -9.96156 -8.92762 -7.83015 -5.09637 -1.21722 -0.11955 0.10007 0.49334 1.07719 1.52110 1.55285 1.56680 1.62276 2.05580 2.57172 2.63655 2.79809 2.91271 3.11650 3.37428 3.50738 3.60941 3.63015 3.78026 3.92804 3.98523 4.11412 4.13793 4.41024 4.41824 4.51017 4.53425 4.59741 4.66450 4.78416 4.90668 4.95022 5.12999 5.15686 5.23988 5.30432 5.44224 5.59161 5.66085 5.75892 6.27456 6.37050 6.59643 7.08028 7.16005 7.45334 8.16584 8.41371 9.39993 Molecular weight = 331.15amu Principal moments of inertia in cm(-1) A = 0.011798 B = 0.002967 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.679027 B = 9434.508353 C =11462.151804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.164 3.836 4 H 0.059 0.941 5 C 0.118 3.882 6 N -0.689 5.689 7 C 0.561 3.439 8 O -0.566 6.566 9 C 0.075 3.925 10 C -0.084 4.084 11 C -0.058 4.058 12 C 0.098 3.902 13 N -0.328 5.328 14 C 0.253 3.747 15 N -0.354 5.354 16 N -0.053 5.053 17 N -0.092 5.092 18 C 0.120 3.880 19 N -0.444 5.444 20 N -0.727 5.727 21 C -0.212 4.212 22 H 0.079 0.921 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.956 3.044 26 H -0.267 1.267 27 H -0.305 1.305 28 H -0.297 1.297 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.418 0.582 37 H 0.171 0.829 38 H 0.175 0.825 39 H 0.295 0.705 40 H 0.211 0.789 41 H 0.372 0.628 42 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.845 5.604 -9.742 14.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.170 4.170 3 C 0.055 3.945 4 H 0.077 0.923 5 C -0.006 4.006 6 N -0.339 5.339 7 C 0.346 3.654 8 O -0.446 6.446 9 C -0.063 4.063 10 C -0.106 4.106 11 C -0.085 4.085 12 C 0.002 3.998 13 N -0.119 5.119 14 C -0.042 4.042 15 N -0.202 5.202 16 N -0.048 5.048 17 N -0.077 5.077 18 C -0.045 4.045 19 N -0.154 5.154 20 N -0.367 5.367 21 C -0.344 4.344 22 H 0.097 0.903 23 C -0.263 4.263 24 N -0.618 5.618 25 Si 0.788 3.212 26 H -0.192 1.192 27 H -0.233 1.233 28 H -0.224 1.224 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.256 0.744 37 H 0.189 0.811 38 H 0.192 0.808 39 H 0.310 0.690 40 H 0.227 0.773 41 H 0.204 0.796 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 10.550 5.492 -10.011 15.546 hybrid contribution -0.861 0.277 0.975 1.330 sum 9.690 5.769 -9.036 14.450 Atomic orbital electron populations 1.21705 0.96056 1.00548 1.01800 1.21989 0.96579 0.97269 1.01159 1.20724 0.90833 0.93365 0.89575 0.92314 1.21720 0.94578 0.82242 1.02072 1.45902 1.07019 1.11267 1.69689 1.18044 0.82801 0.87298 0.77230 1.90758 1.56670 1.45355 1.51815 1.21269 0.91708 0.92984 1.00290 1.22162 0.95051 0.97888 0.95480 1.21605 1.01634 0.90169 0.95104 1.18973 0.95631 0.80207 1.04951 1.48943 1.07350 1.07692 1.47874 1.28621 1.03086 0.79936 0.92607 1.74484 0.96640 1.26847 1.22250 1.78105 1.13162 1.04165 1.09398 1.82652 0.98145 1.05322 1.21592 1.23246 0.91475 0.94397 0.95340 1.67759 1.38086 0.99861 1.09712 1.42568 1.15811 1.66050 1.12302 1.19504 0.92377 1.25095 0.97396 0.90278 1.25317 1.00736 1.03516 0.96707 1.69815 1.36611 1.51080 1.04286 0.85317 0.81116 0.77552 0.77260 1.19152 1.23339 1.22442 0.93274 0.93216 0.92935 0.90514 0.93515 0.89458 0.92432 0.74425 0.81107 0.80788 0.69045 0.77271 0.79602 0.94564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 9.18 71.98 0.66 -3.94 16 2 C -0.13 -3.94 5.61 30.59 0.17 -3.77 16 3 C 0.16 5.48 2.59 44.99 0.12 5.60 16 4 H 0.06 1.95 8.08 -2.38 -0.02 1.93 16 5 C 0.12 3.59 5.23 86.38 0.45 4.04 16 6 N -0.69 -21.48 5.38 -465.79 -2.50 -23.99 16 7 C 0.56 17.00 7.81 86.84 0.68 17.68 16 8 O -0.57 -19.27 16.31 -3.82 -0.06 -19.33 16 9 C 0.08 1.84 6.75 41.88 0.28 2.12 16 10 C -0.08 -1.59 9.62 22.59 0.22 -1.37 16 11 C -0.06 -0.89 9.81 22.55 0.22 -0.67 16 12 C 0.10 1.48 6.73 38.33 0.26 1.74 16 13 N -0.33 -5.14 3.85 -190.58 -0.73 -5.88 16 14 C 0.25 3.02 12.16 180.17 2.19 5.21 16 15 N -0.35 -6.99 12.15 -60.10 -0.73 -7.72 16 16 N -0.05 -1.25 13.39 37.02 0.50 -0.75 16 17 N -0.09 -1.94 13.41 37.02 0.50 -1.44 16 18 C 0.12 1.82 10.65 85.00 0.91 2.73 16 19 N -0.44 -10.16 9.53 -184.48 -1.76 -11.92 16 20 N -0.73 -31.48 4.51 -322.94 -1.46 -32.93 16 21 C -0.21 -10.23 7.75 84.03 0.65 -9.58 16 22 H 0.08 3.69 7.33 -2.91 -0.02 3.67 16 23 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 24 N -0.97 -54.90 13.06 21.65 0.28 -54.62 16 25 Si 0.96 42.98 29.55 68.60 2.03 45.01 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.31 -14.22 7.11 99.48 0.71 -13.51 16 28 H -0.30 -13.43 7.11 99.48 0.71 -12.72 16 29 H 0.05 1.93 5.99 -2.39 -0.01 1.92 16 30 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 35 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.42 13.84 7.46 -92.71 -0.69 13.15 16 37 H 0.17 2.91 7.63 -2.91 -0.02 2.89 16 38 H 0.17 2.14 7.85 -2.91 -0.02 2.12 16 39 H 0.29 -0.08 7.23 -2.91 -0.02 -0.10 16 40 H 0.21 1.40 6.92 -2.91 -0.02 1.38 16 41 H 0.37 18.11 7.80 -92.71 -0.72 17.39 16 42 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -68.98 365.29 3.01 -65.97 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: -0.32 Total: 31.04 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 7.27 Total: 16.56 kcal Atomic # 7 Polarization: -133.34 SS G_CDS: -5.91 Total: -139.24 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.06 Total: -19.33 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -68.98 3.01 -65.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269442349.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.971 kcal (2) G-P(sol) polarization free energy of solvation -68.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds