Wall clock time and date at job start Tue Mar 31 2020 16:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50707 * 119.99911 * 2 1 4 4 O 1.42908 * 109.46805 * 135.00097 * 3 2 1 5 5 C 1.42900 * 113.99629 * 180.02562 * 4 3 2 6 6 H 1.08996 * 110.88672 * 333.88065 * 5 4 3 7 7 C 1.55160 * 111.00377 * 97.80359 * 5 4 3 8 8 C 1.54319 * 102.93895 * 153.57294 * 7 5 4 9 9 N 1.47280 * 107.31027 * 337.82009 * 8 7 5 10 10 C 1.34778 * 125.79380 * 178.92397 * 9 8 7 11 11 O 1.21286 * 120.00045 * 179.97438 * 10 9 8 12 12 C 1.50697 * 120.00116 * 0.02562 * 10 9 8 13 13 C 1.50703 * 109.47303 * 179.97438 * 12 10 9 14 14 C 1.38330 * 119.96641 * 89.99538 * 13 12 10 15 15 C 1.38276 * 120.13597 * 180.02562 * 14 13 12 16 16 C 1.38122 * 120.07051 * 0.02562 * 15 14 13 17 17 C 1.38851 * 119.93311 * 359.97438 * 16 15 14 18 18 O 1.35750 * 120.07122 * 180.02562 * 17 16 15 19 19 C 1.34826 * 116.99801 * 354.46494 * 18 17 16 20 20 H 1.08003 * 120.00009 * 5.05963 * 19 18 17 21 21 C 1.38656 * 120.00031 * 185.05325 * 19 18 17 22 22 N 1.31557 * 119.99867 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00184 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47148 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46967 * 120.00387 * 23 21 19 26 26 H 1.48496 * 109.47730 * 240.00591 * 23 21 19 27 27 C 1.38076 * 119.96466 * 269.72500 * 13 12 10 28 28 C 1.47423 * 108.56099 * 358.92139 * 9 8 7 29 29 H 1.08009 * 119.99742 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00142 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00142 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46671 * 15.00657 * 3 2 1 33 33 H 1.08998 * 109.47212 * 255.00006 * 3 2 1 34 34 H 1.08995 * 110.71903 * 271.94020 * 7 5 4 35 35 H 1.09002 * 110.71650 * 35.21232 * 7 5 4 36 36 H 1.09003 * 109.88310 * 97.22928 * 8 7 5 37 37 H 1.09007 * 109.88502 * 218.38761 * 8 7 5 38 38 H 1.09003 * 109.46824 * 299.99540 * 12 10 9 39 39 H 1.08996 * 109.47528 * 59.99402 * 12 10 9 40 40 H 1.07993 * 119.92905 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.95978 * 180.02562 * 15 14 13 42 42 H 1.07997 * 120.03272 * 179.97438 * 16 15 14 43 43 H 0.97003 * 120.00033 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.03382 * 359.97438 * 27 13 12 45 45 H 1.09001 * 110.37125 * 265.26627 * 28 9 8 46 46 H 1.08995 * 110.36891 * 143.04824 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0329 6 1 3.8724 2.9865 0.0933 7 6 3.4450 3.3240 2.2177 8 6 4.7190 4.1200 2.5707 9 7 5.8693 3.3546 2.0606 10 6 7.1629 3.7226 2.1496 11 8 8.0294 3.0082 1.6916 12 6 7.5326 5.0209 2.8193 13 6 9.0292 5.1946 2.7869 14 6 9.6268 5.8417 1.7203 15 6 10.9998 6.0025 1.6868 16 6 11.7789 5.5166 2.7186 17 6 11.1821 4.8665 3.7906 18 8 11.9451 4.3882 4.8064 19 6 13.2827 4.4744 4.6602 20 1 13.7007 4.9820 3.8034 21 6 14.1216 3.9115 5.6099 22 7 13.6124 3.2929 6.6534 23 14 15.9747 4.0302 5.4071 24 1 16.2896 4.7700 4.1585 25 1 16.5546 4.7511 6.5687 26 1 16.5532 2.6646 5.3330 27 6 9.8020 4.7124 3.8246 28 6 5.3693 2.1167 1.4354 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3854 2.1161 0.2661 33 1 2.4754 1.4869 -0.9926 34 1 2.6446 3.9952 1.9066 35 1 3.1285 2.7091 3.0602 36 1 4.6869 5.1006 2.0959 37 1 4.7985 4.2319 3.6521 38 1 7.0589 5.8493 2.2923 39 1 7.1912 5.0061 3.8543 40 1 9.0198 6.2214 0.9119 41 1 11.4633 6.5086 0.8529 42 1 12.8512 5.6421 2.6915 43 1 14.1993 2.8987 7.3176 44 1 9.3344 4.2115 4.6593 45 1 5.3953 1.2936 2.1495 46 1 5.9607 1.8716 0.5533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320205155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:13 Heat of formation + Delta-G solvation = -53.612055 kcal Electronic energy + Delta-G solvation = -26900.947635 eV Core-core repulsion = 22950.332408 eV Total energy + Delta-G solvation = -3950.615227 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.30217 -39.10842 -38.48747 -36.88682 -36.24651 -34.20755 -32.39387 -32.04200 -30.99501 -29.38494 -28.98282 -27.05800 -26.13452 -25.18276 -23.62559 -21.68695 -21.55129 -20.90610 -20.35687 -19.33648 -17.73961 -17.55287 -17.21734 -16.87835 -16.18049 -15.58860 -15.45414 -15.19897 -14.99543 -14.62079 -14.37358 -14.31709 -14.05551 -13.57292 -13.47491 -13.29226 -13.16455 -12.92424 -12.58526 -12.43284 -12.33862 -12.20331 -12.02393 -11.77812 -11.49250 -11.44496 -11.22895 -11.08913 -10.80449 -10.70681 -10.55366 -10.37704 -10.26649 -9.76323 -9.74171 -9.26917 -8.77963 -8.76294 -8.00551 -7.15151 -6.37975 -3.96805 1.66093 2.12664 2.45127 2.74496 2.78270 3.16836 3.18636 3.23959 3.43352 4.02188 4.07675 4.20324 4.42652 4.55877 4.59456 4.64206 4.75920 4.88979 4.93247 4.99676 5.02386 5.06330 5.21112 5.24273 5.29359 5.35754 5.39014 5.51064 5.60135 5.63312 5.64361 5.72500 5.81107 5.98913 6.08338 6.09583 6.17301 6.24392 6.40333 6.72118 6.76020 6.98157 7.13937 7.32883 7.40149 7.43555 7.50767 7.89250 8.07284 8.26814 9.07944 9.79148 10.80470 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.001910 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.096472 B =14652.607446 C =15176.993833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.152 4.152 3 C 0.088 3.912 4 O -0.368 6.368 5 C 0.076 3.924 6 H 0.080 0.920 7 C -0.153 4.153 8 C 0.102 3.898 9 N -0.627 5.627 10 C 0.532 3.468 11 O -0.513 6.513 12 C -0.087 4.087 13 C -0.035 4.035 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.230 4.230 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.276 1.276 27 C -0.173 4.173 28 C 0.110 3.890 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.118 0.882 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.268 0.732 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.487 1.063 -11.925 28.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.170 4.170 3 C 0.012 3.988 4 O -0.286 6.286 5 C 0.017 3.983 6 H 0.098 0.902 7 C -0.191 4.191 8 C -0.021 4.021 9 N -0.366 5.366 10 C 0.321 3.679 11 O -0.387 6.387 12 C -0.126 4.126 13 C -0.035 4.035 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.192 4.192 28 C -0.013 4.013 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.144 0.856 43 H 0.078 0.922 44 H 0.132 0.868 45 H 0.096 0.904 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.828 0.310 -11.625 27.417 hybrid contribution 0.764 0.246 -0.278 0.850 sum -24.064 0.556 -11.903 26.852 Atomic orbital electron populations 1.23854 0.95551 1.02346 0.99919 1.22751 0.95651 0.98232 1.00358 1.21626 0.88863 0.95999 0.92319 1.87937 1.44306 1.36025 1.60356 1.23210 0.90933 0.86141 0.98016 0.90212 1.23130 0.97118 0.99053 0.99775 1.22037 0.84679 0.95381 0.99989 1.48487 1.05784 1.22400 1.59941 1.20497 0.79861 0.88025 0.79510 1.90782 1.47096 1.54136 1.46662 1.20554 0.95231 0.94765 1.02094 1.18672 0.91967 0.98196 0.94714 1.20337 0.94681 1.07474 0.99021 1.20674 0.93444 0.98062 0.97126 1.21175 1.00614 1.06492 0.96701 1.19270 0.91048 0.91770 0.87786 1.83975 1.18710 1.70213 1.35500 1.21367 0.78059 1.37214 1.09988 0.89072 1.25277 1.00321 0.95884 0.95106 1.70054 1.35683 1.33855 1.10373 0.85650 0.80836 0.78355 0.78584 1.19129 1.20213 1.20191 1.19942 0.91290 1.07312 1.00698 1.22018 0.92075 0.87985 0.99189 0.87715 0.88417 0.86429 0.92605 0.92084 0.89864 0.89311 0.90987 0.90680 0.88443 0.88261 0.87978 0.87474 0.85602 0.92177 0.86826 0.90421 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 14.31 29.02 0.42 -0.50 16 2 C -0.15 -0.97 9.89 -36.02 -0.36 -1.32 16 3 C 0.09 0.57 6.19 36.01 0.22 0.79 16 4 O -0.37 -3.27 10.14 -35.23 -0.36 -3.63 16 5 C 0.08 0.61 3.55 -24.58 -0.09 0.52 16 6 H 0.08 0.54 7.83 -51.93 -0.41 0.14 16 7 C -0.15 -0.98 6.69 -24.90 -0.17 -1.15 16 8 C 0.10 0.78 6.51 -2.93 -0.02 0.76 16 9 N -0.63 -7.38 3.33 -170.31 -0.57 -7.95 16 10 C 0.53 8.29 7.85 -10.99 -0.09 8.20 16 11 O -0.51 -10.60 16.29 5.55 0.09 -10.51 16 12 C -0.09 -1.21 5.03 -29.04 -0.15 -1.36 16 13 C -0.03 -0.66 4.37 -104.65 -0.46 -1.12 16 14 C -0.20 -3.63 9.70 -39.53 -0.38 -4.02 16 15 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 16 C -0.23 -5.32 9.17 -39.40 -0.36 -5.68 16 17 C 0.15 3.95 6.65 -39.11 -0.26 3.69 16 18 O -0.18 -5.36 9.76 0.06 0.00 -5.36 16 19 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 20 H 0.09 2.46 5.20 -52.48 -0.27 2.18 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 22 N -0.86 -26.07 13.67 55.48 0.76 -25.31 16 23 Si 0.94 21.18 29.55 -169.99 -5.02 16.16 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.17 -3.90 9.64 -39.39 -0.38 -4.28 16 28 C 0.11 1.22 6.63 -2.53 -0.02 1.20 16 29 H 0.10 0.43 8.06 -52.48 -0.42 0.00 16 30 H 0.10 0.40 7.90 -52.49 -0.41 -0.02 16 31 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 32 H 0.06 0.29 7.86 -51.93 -0.41 -0.12 16 33 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 1.04 8.09 -51.93 -0.42 0.62 16 39 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 40 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 42 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.11 2.49 8.06 -52.49 -0.42 2.06 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.08 1.02 8.03 -51.93 -0.42 0.60 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -35.83 391.31 -8.32 -44.15 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.84 Total: 2.70 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.28 Total: -16.14 kcal Atomic # 7 Polarization: -33.45 SS G_CDS: 0.19 Total: -33.26 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.27 Total: -19.51 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.83 -8.32 -44.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320205155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.462 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds