Wall clock time and date at job start Tue Mar 31 2020 16:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50707 * 119.99911 * 2 1 4 4 O 1.42908 * 109.46805 * 135.00097 * 3 2 1 5 5 C 1.42900 * 113.99629 * 180.02562 * 4 3 2 6 6 H 1.08996 * 110.88672 * 333.88065 * 5 4 3 7 7 C 1.55160 * 111.00377 * 97.80359 * 5 4 3 8 8 C 1.54319 * 102.93895 * 153.57294 * 7 5 4 9 9 N 1.47280 * 107.31027 * 337.82009 * 8 7 5 10 10 C 1.34778 * 125.79380 * 178.92397 * 9 8 7 11 11 O 1.21286 * 120.00045 * 179.97438 * 10 9 8 12 12 C 1.50697 * 120.00116 * 0.02562 * 10 9 8 13 13 C 1.50703 * 109.47303 * 179.97438 * 12 10 9 14 14 C 1.38330 * 119.96641 * 89.99538 * 13 12 10 15 15 C 1.38276 * 120.13597 * 180.02562 * 14 13 12 16 16 C 1.38122 * 120.07051 * 0.02562 * 15 14 13 17 17 C 1.38851 * 119.93311 * 359.97438 * 16 15 14 18 18 O 1.35750 * 120.07122 * 180.02562 * 17 16 15 19 19 C 1.34826 * 116.99801 * 354.46494 * 18 17 16 20 20 H 1.08003 * 120.00009 * 5.05963 * 19 18 17 21 21 C 1.38656 * 120.00031 * 185.05325 * 19 18 17 22 22 N 1.31557 * 119.99867 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00184 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47148 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46967 * 120.00387 * 23 21 19 26 26 H 1.48496 * 109.47730 * 240.00591 * 23 21 19 27 27 C 1.38076 * 119.96466 * 269.72500 * 13 12 10 28 28 C 1.47423 * 108.56099 * 358.92139 * 9 8 7 29 29 H 1.08009 * 119.99742 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.00142 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.00142 * 180.02562 * 2 1 3 32 32 H 1.09000 * 109.46671 * 15.00657 * 3 2 1 33 33 H 1.08998 * 109.47212 * 255.00006 * 3 2 1 34 34 H 1.08995 * 110.71903 * 271.94020 * 7 5 4 35 35 H 1.09002 * 110.71650 * 35.21232 * 7 5 4 36 36 H 1.09003 * 109.88310 * 97.22928 * 8 7 5 37 37 H 1.09007 * 109.88502 * 218.38761 * 8 7 5 38 38 H 1.09003 * 109.46824 * 299.99540 * 12 10 9 39 39 H 1.08996 * 109.47528 * 59.99402 * 12 10 9 40 40 H 1.07993 * 119.92905 * 359.97438 * 14 13 12 41 41 H 1.08002 * 119.95978 * 180.02562 * 15 14 13 42 42 H 1.07997 * 120.03272 * 179.97438 * 16 15 14 43 43 H 0.97003 * 120.00033 * 179.97438 * 22 21 19 44 44 H 1.07999 * 120.03382 * 359.97438 * 27 13 12 45 45 H 1.09001 * 110.37125 * 265.26627 * 28 9 8 46 46 H 1.08995 * 110.36891 * 143.04824 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0329 6 1 3.8724 2.9865 0.0933 7 6 3.4450 3.3240 2.2177 8 6 4.7190 4.1200 2.5707 9 7 5.8693 3.3546 2.0606 10 6 7.1629 3.7226 2.1496 11 8 8.0294 3.0082 1.6916 12 6 7.5326 5.0209 2.8193 13 6 9.0292 5.1946 2.7869 14 6 9.6268 5.8417 1.7203 15 6 10.9998 6.0025 1.6868 16 6 11.7789 5.5166 2.7186 17 6 11.1821 4.8665 3.7906 18 8 11.9451 4.3882 4.8064 19 6 13.2827 4.4744 4.6602 20 1 13.7007 4.9820 3.8034 21 6 14.1216 3.9115 5.6099 22 7 13.6124 3.2929 6.6534 23 14 15.9747 4.0302 5.4071 24 1 16.2896 4.7700 4.1585 25 1 16.5546 4.7511 6.5687 26 1 16.5532 2.6646 5.3330 27 6 9.8020 4.7124 3.8246 28 6 5.3693 2.1167 1.4354 29 1 -0.5400 -0.9354 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3854 2.1161 0.2661 33 1 2.4754 1.4869 -0.9926 34 1 2.6446 3.9952 1.9066 35 1 3.1285 2.7091 3.0602 36 1 4.6869 5.1006 2.0959 37 1 4.7985 4.2319 3.6521 38 1 7.0589 5.8493 2.2923 39 1 7.1912 5.0061 3.8543 40 1 9.0198 6.2214 0.9119 41 1 11.4633 6.5086 0.8529 42 1 12.8512 5.6421 2.6915 43 1 14.1993 2.8987 7.3176 44 1 9.3344 4.2115 4.6593 45 1 5.3953 1.2936 2.1495 46 1 5.9607 1.8716 0.5533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320205155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:12 Heat of formation + Delta-G solvation = -77.202605 kcal Electronic energy + Delta-G solvation = -26901.970598 eV Core-core repulsion = 22950.332408 eV Total energy + Delta-G solvation = -3951.638190 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.162 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36173 -40.64377 -39.54168 -38.24252 -37.48957 -34.72159 -34.34831 -33.55786 -31.90107 -30.89497 -30.02096 -28.31774 -27.27032 -26.67898 -24.53912 -23.26853 -22.64169 -22.15208 -20.85023 -20.43683 -19.42852 -18.73896 -18.38652 -18.21226 -16.97391 -16.74352 -16.51572 -16.40852 -16.11367 -16.06044 -15.85633 -15.49590 -15.25832 -14.97385 -14.70865 -14.37954 -14.08598 -13.99565 -13.88456 -13.80281 -13.58511 -13.08863 -12.98315 -12.83363 -12.73148 -12.68670 -12.51680 -12.34952 -12.22983 -12.08498 -11.89557 -11.64478 -11.21587 -11.02787 -10.81900 -10.79266 -10.22456 -9.72895 -9.64992 -8.98364 -8.47662 -6.16231 0.49968 0.75070 1.22734 1.33352 1.42480 1.52467 1.59289 1.83879 2.17209 2.79463 2.86008 3.13596 3.40993 3.44714 3.59061 3.78725 3.91189 4.01614 4.08742 4.09925 4.20541 4.24947 4.31652 4.36805 4.41138 4.46200 4.55552 4.58286 4.61235 4.65404 4.73021 4.74952 4.82103 4.98480 5.00439 5.05776 5.12586 5.13552 5.25337 5.30260 5.64382 5.67827 5.72162 5.73294 5.74527 6.02383 6.21444 6.22668 6.43306 6.96928 7.13044 7.78607 8.76249 Molecular weight = 331.16amu Principal moments of inertia in cm(-1) A = 0.023443 B = 0.001910 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.096472 B =14652.607446 C =15176.993833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.177 4.177 3 C 0.086 3.914 4 O -0.391 6.391 5 C 0.084 3.916 6 H 0.098 0.902 7 C -0.143 4.143 8 C 0.093 3.907 9 N -0.620 5.620 10 C 0.528 3.472 11 O -0.581 6.581 12 C -0.081 4.081 13 C -0.029 4.029 14 C -0.179 4.179 15 C -0.073 4.073 16 C -0.246 4.246 17 C 0.111 3.889 18 O -0.235 6.235 19 C -0.414 4.414 20 H 0.101 0.899 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.251 1.251 25 H -0.265 1.265 26 H -0.270 1.270 27 C -0.192 4.192 28 C 0.102 3.898 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.120 0.880 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.118 0.882 43 H 0.272 0.728 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.220 3.580 -14.300 31.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.010 3.990 4 O -0.310 6.310 5 C 0.026 3.974 6 H 0.116 0.884 7 C -0.181 4.181 8 C -0.028 4.028 9 N -0.356 5.356 10 C 0.319 3.681 11 O -0.460 6.460 12 C -0.121 4.121 13 C -0.029 4.029 14 C -0.197 4.197 15 C -0.091 4.091 16 C -0.265 4.265 17 C 0.061 3.939 18 O -0.142 6.142 19 C -0.490 4.490 20 H 0.118 0.882 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.175 1.175 25 H -0.190 1.190 26 H -0.195 1.195 27 C -0.212 4.212 28 C -0.021 4.021 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.164 0.836 39 H 0.138 0.862 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.123 0.877 45 H 0.078 0.922 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -27.667 2.865 -14.030 31.153 hybrid contribution 1.243 -0.511 0.264 1.370 sum -26.424 2.354 -13.766 29.887 Atomic orbital electron populations 1.24057 0.95104 1.03444 0.97822 1.22796 0.96286 0.98058 1.02355 1.21777 0.88531 0.96556 0.92137 1.87913 1.45122 1.36752 1.61205 1.23141 0.88575 0.86201 0.99528 0.88440 1.23125 0.97344 0.98912 0.98672 1.22438 0.83204 0.96289 1.00901 1.48469 1.05814 1.22694 1.58628 1.20723 0.80450 0.88038 0.78938 1.90763 1.49241 1.56105 1.49846 1.20650 0.91766 0.95564 1.04071 1.19207 0.94734 0.95903 0.93068 1.20976 0.94681 1.04819 0.99229 1.21145 0.94085 0.97043 0.96848 1.21301 1.00774 1.07131 0.97314 1.19879 0.92175 0.93364 0.88506 1.83933 1.19279 1.72966 1.38046 1.21877 0.78540 1.37856 1.10742 0.88197 1.26634 1.06076 0.95116 0.94401 1.70201 1.37930 1.36071 1.11886 0.84499 0.73307 0.78777 0.79384 1.17475 1.18971 1.19483 1.20211 0.90658 1.08190 1.02101 1.22065 0.94489 0.87559 0.98012 0.86955 0.86982 0.87568 0.90700 0.91498 0.86634 0.89995 0.87868 0.89662 0.83587 0.86203 0.83347 0.83542 0.86410 0.91869 0.87736 0.92205 0.91682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 14.31 67.79 0.97 -0.40 16 2 C -0.18 -2.06 9.89 25.66 0.25 -1.81 16 3 C 0.09 0.94 6.19 71.24 0.44 1.38 16 4 O -0.39 -6.45 10.14 -148.98 -1.51 -7.96 16 5 C 0.08 1.16 3.55 31.99 0.11 1.27 16 6 H 0.10 1.00 7.83 -2.39 -0.02 0.98 16 7 C -0.14 -1.30 6.69 31.78 0.21 -1.09 16 8 C 0.09 1.03 6.51 86.68 0.56 1.59 16 9 N -0.62 -13.35 3.33 -811.14 -2.70 -16.05 16 10 C 0.53 15.65 7.85 87.66 0.69 16.33 16 11 O -0.58 -24.28 16.29 -3.05 -0.05 -24.32 16 12 C -0.08 -1.99 5.03 29.10 0.15 -1.85 16 13 C -0.03 -1.03 4.37 -19.88 -0.09 -1.11 16 14 C -0.18 -5.98 9.70 22.30 0.22 -5.77 16 15 C -0.07 -2.72 10.04 22.25 0.22 -2.50 16 16 C -0.25 -11.58 9.17 22.39 0.21 -11.38 16 17 C 0.11 5.97 6.65 22.58 0.15 6.12 16 18 O -0.24 -15.07 9.76 -22.71 -0.22 -15.29 16 19 C -0.41 -25.45 9.49 67.92 0.64 -24.80 16 20 H 0.10 5.67 5.20 -2.91 -0.02 5.65 16 21 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 22 N -0.92 -58.92 13.67 21.61 0.30 -58.62 16 23 Si 1.02 44.82 29.55 68.60 2.03 46.85 16 24 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 C -0.19 -8.95 9.64 22.39 0.22 -8.73 16 28 C 0.10 2.23 6.63 86.86 0.58 2.81 16 29 H 0.11 0.71 8.06 -2.91 -0.02 0.69 16 30 H 0.11 0.58 7.90 -2.91 -0.02 0.56 16 31 H 0.11 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.07 0.52 7.86 -2.39 -0.02 0.50 16 33 H 0.07 0.63 8.12 -2.39 -0.02 0.61 16 34 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.15 2.19 8.09 -2.39 -0.02 2.17 16 39 H 0.12 2.49 8.08 -2.39 -0.02 2.47 16 40 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 41 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.12 5.60 5.64 -2.91 -0.02 5.58 16 43 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 44 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 1.64 8.03 -2.39 -0.02 1.62 16 Total: -1.00 -87.50 391.31 4.80 -82.70 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.97 Total: 23.67 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 6.00 Total: -30.96 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -2.41 Total: -74.67 kcal Atomic # 8 Polarization: -45.80 SS G_CDS: -1.78 Total: -47.58 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -87.50 4.80 -82.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320205155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.497 kcal (2) G-P(sol) polarization free energy of solvation -87.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds